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LOCUS XM_013249341 2080 bp mRNA linear INV 02-SEP-2023 (LOC106085217), transcript variant X1, mRNA. ACCESSION XM_013249341 VERSION XM_013249341.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013249341.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2080 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..2080 /gene="LOC106085217" /note="zinc finger protein 660; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:106085217" CDS 84..1883 /gene="LOC106085217" /codon_start=1 /product="transcription factor grauzone isoform X1" /protein_id="XP_013104795.1" /db_xref="GeneID:106085217" /translation="MVCRLCLKAIPSESVIKLYQDLNCATEALEMVKHIEKYLDIEVR QDDVVSTMICQDCHDHLEEFHKFYQDVKGKQCTLHNNFLEVELKEESHDSRDVDVKNN DDSNKVDGNDKISNVAKEIEQAMFESPIDIMKTEADDEKDEQEVIATDVLDDDVDLDK EDVFADDGVDIDSADLQSSEDDVPLINLKTKKKITLKRKYTTKGTPKEPKERKQRREP RERKEPKEPKERKERKVPKERKEPKEPRKKGERKKNLSAQELIATSMELKCDICQVQV NTWKELRQHFLLAHTRTPYIKCCDTVYEKQRPLADHLQWHKNPDAFKCKMCNEVLSNS RDLTSHISSQHPDNVDILENYECEHCFKQFRNYTIFKNHLRTHSKDKDVECQICNKRF VTKQQLRRHQTAQHKDVPIHVCDVCGKNFKCKESFKRHYQEHQGLTEPPVQCSICKTW LKNPNSLRLHRFKHEDVPQPCKICGKVFKTRRSLKNHIKYLHEMEKNLQCNFCDKVFR EKRGLDEHLATHTGAQLYTCPHCGKESRSKSNMYVHIKRQHPKEWWKTKMERLKLDPN TENPELRQERQPEKTYEQLQLMQQFRILNSFMQ" misc_feature 87..323 /gene="LOC106085217" /note="Zinc-finger associated domain (zf-AD); Region: zf-AD; smart00868" /db_xref="CDD:214871" misc_feature 1053..1115 /gene="LOC106085217" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1152..1214 /gene="LOC106085217" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1167..1169,1173..1175,1179..1181,1185..1190, 1197..1202,1209..1211,1251..1253,1257..1259,1269..1274, 1281..1286,1293..1295,1338..1340,1344..1346,1350..1352, 1356..1361,1368..1373) /gene="LOC106085217" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1236..1298 /gene="LOC106085217" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature <1302..1559 /gene="LOC106085217" /note="Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]; Region: SFP1; COG5189" /db_xref="CDD:227516" misc_feature 1323..1373 /gene="LOC106085217" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1413..1475 /gene="LOC106085217" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1494..1559 /gene="LOC106085217" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1509..1511,1515..1517,1521..1523,1527..1532, 1539..1544,1554..1556,1596..1598,1602..1604,1614..1619, 1626..1631,1638..1640,1680..1682,1686..1688,1692..1694, 1698..1703,1710..1715) /gene="LOC106085217" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1581..1643 /gene="LOC106085217" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1665..1721 /gene="LOC106085217" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" polyA_site 2080 /gene="LOC106085217" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 taagatagaa agaagaaaat atacacatcc cattttcttg gtgtccgaga caaaaaattg 61 caaattggaa aaataccaat aaaatggttt gccgtttgtg tctaaaagca attcctagtg 121 aatctgtaat aaaattatac caagatttaa actgtgcaac tgaagcactc gaaatggtaa 181 aacatattga aaagtaccta gatattgagg ttaggcaaga tgatgttgtc tccacaatga 241 tatgtcagga ttgccatgac cacttggagg aatttcataa attctatcaa gacgtgaaag 301 ggaagcaatg tacacttcat aacaattttc tggaagttga gcttaaagaa gaaagtcatg 361 atagccggga tgtcgatgtt aagaacaatg acgatagcaa caaagtggat ggtaatgata 421 agattagcaa cgttgccaag gaaatcgaac aagcaatgtt cgaaagtcct attgatatca 481 tgaaaaccga ggcagatgat gaaaaggatg agcaagaagt gatagcaacg gatgtgctag 541 atgatgatgt ggatttggat aaagaggacg tgtttgcgga tgacggtgtt gacattgaca 601 gcgccgattt acaatcatca gaggacgatg tacctttaat aaacttgaaa actaagaaga 661 aaatcacatt aaagcgaaaa tacacaacaa agggcacgcc gaaagaacca aaagaacgca 721 agcaacgcag agaaccaaga gaacgcaagg aaccaaaaga acctaaggaa cggaaagaac 781 gtaaagtgcc aaaggagaga aaagaaccaa aagaacccag aaagaaaggc gaaagaaaaa 841 agaatctatc agcgcaagag cttatagcaa cttcaatgga attaaaatgt gacatttgtc 901 aagttcaagt taacacatgg aaagaattaa gacaacactt tttattggct cacacgcgta 961 caccttacat aaaatgttgt gatacagttt atgaaaaaca acggcccttg gccgatcatc 1021 ttcaatggca caaaaatccc gatgcattca aatgcaaaat gtgcaatgag gtactatcta 1081 attccagaga tttgacctct cacattagca gccaacatcc tgataatgtc gatatacttg 1141 aaaattatga gtgcgaacat tgttttaaac aattccgtaa ttacacaata ttcaaaaatc 1201 atttacgtac ccacagcaaa gacaaagacg ttgaatgcca aatatgcaac aaaaggttcg 1261 taaccaaaca acaattacgt cgtcaccaaa ctgcccagca taaggatgtg ccaattcatg 1321 tatgtgatgt ttgtggcaaa aatttcaaat gcaaagaatc attcaaacgg cactatcaag 1381 aacatcaagg tctgacggaa cccccagtac agtgttctat atgcaagaca tggcttaaaa 1441 atcccaacag tttgcgttta catcgtttta aacatgaaga tgtaccacaa ccgtgtaaga 1501 tatgtggcaa agtgtttaag acccgacgca gtttgaaaaa ccatataaaa tatttacacg 1561 aaatggaaaa aaatttacag tgtaattttt gtgataaagt atttcgagaa aagcgtggtc 1621 tggacgaaca cttggccacc cataccggag cccagttata cacatgtcca cattgcggca 1681 aagaatcacg ttccaaatca aacatgtatg tccatataaa acgtcaacat cccaaagaat 1741 ggtggaagac gaagatggag cgactaaagc tagatccaaa tacggaaaat cccgaattgc 1801 gtcaggagag gcaaccggaa aaaacctatg agcagcttca gttaatgcaa caatttcgta 1861 tactaaattc ttttatgcag taatttttaa gttaacttgt tttgtttaat ttcatggtgg 1921 aagagaaaac tatgctattt cgaattggtg cggtagctcc ttgtactttg aagaaaacat 1981 agaccgcttg tatatgtaaa gaaatcacta tcgtttgaaa atatttagta ttttaataca 2041 aatggcatgt cctcaaggca caacagatgg acttctgaaa