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LOCUS XM_013249185 6337 bp mRNA linear INV 02-SEP-2023 transcript variant X4, mRNA. ACCESSION XM_013249185 VERSION XM_013249185.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013249185.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6337 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..6337 /gene="LOC106085133" /note="clathrin heavy chain; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 50 Proteins" /db_xref="GeneID:106085133" CDS 285..5321 /gene="LOC106085133" /codon_start=1 /product="clathrin heavy chain isoform X2" /protein_id="XP_013104639.2" /db_xref="GeneID:106085133" /translation="MTQILPIRFQEHLQLTNVGININSISFSTLTMESDKFICVREKV NDTAQVVIIDMNDTNNPTRRPISADSAIMNPASKVIALKAQKTLQIFNIEMKSKMKAH TMTEDVVFWKWISLNTLALVTETSVYHWSMEGDSTPHKMFDRHSSLNGCQIINYRCNP NQQWLLLVGISALPNRVAGAMQLYSVERKVSQAIEGHAAAFASFKMEGNKEPSTLFCF AVRTATGGKLHIIEVGSPPTGNQPFVKKSVDVFFPPEAQSDFPVAMQVSSKYDTIYLI TKYGYIHLYDMETGTCIYMNRISADTIFVTAPHESSGGIIGVNRKGQVLSVTVDEEQI IPYINTVLQNPDLALRMAVRNNLSGAEELFVRKFNKLFTAGQYAEAAKVAALAPKGIL RTPQTIQRFQQVQTPAGSTTPPLLQYFGILLDQGKLNKYESLELCRPVLLQGKKQLCE KWLKEEKLECSEELGDLVKTSDLTLALSIYLRANVPNKVIQCFAETGQFQKIVLYAKK VNYTPDYIFLLRSVMRTNPEQGSGFASMLVAEEEHLADINQIVDIFMEHSMVQQCTAF LLDALKHNRPNEGALQTRLLEMNLISAPQVADAILGNAMFTHYDRAHIAQLCEKAGLL QRALEHYTDLYDIKRAVVHTHLLNADWLVGFFGTLSVEDSLECLKAMLTANIRQNLQI CVQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDPEVHFKYIQAACKTN QIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQ KYIEIYVQKVNPSRLPVVVGGLLDVDCSEDIIKNLILVVKGQFSTDELVEEVEKRNRL KLLLPWLESRVHEGCIEPATHNALAKIYIDSNNNPERFLKENQYYDSRVVGRYCEKRD PHLACVAYERGQCDRELIAVCNENSLFKSEARYLVRRRDAELWAEVLAESNPYKRQLI DQVVQTALSETQDPEDISVTVKAFMTADLPNELIELLEKIILDSSVFSDHRNLQNLLI LTAIKADRTRVMDYINRLDNYDAPDIANIAISNKLYEEAFAIFKKFDVNTSAIQVLIE QVNNLERAYEFAERCNEPAVWSQLAKAQLDKGLVKEAIDSYIKADDPSAYMDVVSVAS QSDSWEDLVRYLQMARKKARESYIESELIYAYARTGRLADLEEFISGPNHADIQKIGD RCFNDGMYDAAKLLYNNVSNFARLAITLVYLKEFQGAVDSARKANSTRTWKEVCFACV DAEEFRLAQMCGLHIVVHADELEDLINYYQDRGYFEELIALLESALGLERAHMGMFTE LAILYSKFKPSKMREHLELFWSRVNIPKVLRAAESAHLWSELVFLYDKYEEYDNAVLA MMAHPTEAWREGHFKDIITKVANIELYYKAIQFYLDYKPLLLNDILLVLAPRMDHTRA VSFFGKTGHLALVKPYLRSVQSLNNKAINEALNGLLIEEEDYQGLRNSIDGFDNFDTI ALAQKLEKHELTEFRRIAAYLYKGNNRWKQSVELCKKDRLYKDAMEYAAESGKQEIAE ELLAWFLERNAFDCFAACLFQCYDLLRPDVIMELAWKHDISDFAMPYMIQVVREYCAK VDKLEQNEARREKEDETVEHKNIITMEPQLMITAGPAMGMPPQYAQNYAAAGQAPGYA PNMAYPGYGM" polyA_site 6337 /gene="LOC106085133" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tgtcacacag catttttcac acaaaatcga tcgatatgtt tttacgcgtt tcgaagtatt 61 aattaatctg aaaaataaga aaaaccttgt gcaacaacaa gaataccaca taaaacaatt 121 aaggtgttgc atttttgaaa acgtcatctc cccaaatctg aaaggcaaac gacgagacat 181 agtaaaaacg acaacaataa aacaataatt gtgtgttcga gtaacataaa aaagaagcag 241 gagaagcagc agcagcgaaa gattgcagga agaaagtgca caaaatgact caaatattac 301 ctatacgctt tcaggagcat ttacagctca caaatgtcgg tattaatatc aattcgatat 361 cgttcagcac tctcaccatg gagtcggaca aattcatttg tgtgcgtgaa aaggtcaatg 421 ataccgcaca agtggtcatt atcgatatga atgacaccaa caatccgact agacgtccaa 481 tttcagccga ttcggccatc atgaatccag ctagcaaagt cattgcactt aaagcgcaaa 541 aaactttgca aatattcaac atcgaaatga aatcaaaaat gaaggcccat accatgaccg 601 aagacgtggt cttttggaag tggatatcct tgaatacatt ggccttggtc accgagacgt 661 ctgtttatca ttggtccatg gagggtgatt cgactccaca taaaatgttc gatagacatt 721 cctccctaaa tggttgtcaa atcatcaatt atcgttgcaa ccctaatcag cagtggcttt 781 tgttggttgg catttcggcg ttgccaaatc gtgtggctgg tgccatgcaa ttgtattcgg 841 ttgagcgtaa agtatcacag gctattgaag gtcatgccgc cgcttttgct tcgttcaaaa 901 tggagggcaa taaggagcct tcaactttgt tctgttttgc cgtgcgcact gctaccggtg 961 gcaaattgca catcattgaa gtgggttctc cgccaactgg taatcaaccg tttgttaaga 1021 aatcggtgga tgtcttcttt ccacccgagg cacagagtga ttttccggta gcaatgcagg 1081 tttcctctaa atatgatacc atctatttga tcaccaaata tggttatatt catctttatg 1141 acatggagac tggcacctgc atttacatga atcgcatatc ggccgataca attttcgtta 1201 ctgcaccaca tgagtcaagc ggtggcatta ttggtgtcaa tcgtaagggt caagttttgt 1261 ccgtaactgt ggatgaggag cagataatac cctacatcaa tacggtattg cagaatcctg 1321 atttggcttt acgcatggca gtgcgcaata atctgtcggg tgctgaagag ctttttgtgc 1381 gtaaattcaa taaacttttt accgccggcc aatatgccga ggctgctaaa gtggccgctt 1441 tggcccccaa gggtattttg agaacgccac agaccataca acgtttccaa caggttcaaa 1501 cacctgccgg ttcgaccaca ccaccattgt tgcagtactt tggtattttg ctggatcagg 1561 gaaagctgaa caaatacgaa tcgctggaat tatgccgccc agtattgttg caaggcaaga 1621 aacagctttg cgagaaatgg cttaaggagg agaagttgga atgcagcgag gagttgggtg 1681 atttggtcaa gacatctgat ctcacattgg ccttgtccat ctatctgagg gccaatgttc 1741 ccaacaaagt tatacagtgc tttgccgaga ctggtcaatt ccagaaaata gtattatatg 1801 ccaagaaggt gaactatacc cccgattaca tattcctttt gcgttcggtt atgcgcacca 1861 atcccgaaca aggttctggt ttcgcttcaa tgttggtggc cgaggaggag cacttggctg 1921 acatcaatca aattgtggac attttcatgg aacactctat ggtgcaacag tgcactgcat 1981 tcctcttgga tgctctcaaa cacaaccgtc ccaacgaagg tgccctacag accagactct 2041 tggaaatgaa tttgatttca gctcctcaag tggccgatgc cattttgggc aacgccatgt 2101 tcacccatta cgatcgtgcg cacatcgccc aattgtgtga aaaggccggt ttgttgcaac 2161 gtgctttgga gcattacacc gatttgtatg acatcaagcg tgccgtggtc catacacatc 2221 ttttgaatgc cgattggctg gtgggcttct ttggcactct atctgtagag gattccctgg 2281 agtgtctaaa ggccatgttg actgctaata taagacaaaa tctacaaatt tgtgttcaaa 2341 ttgctaccaa atatcatgaa caattgacca ccaaagcttt gattgacttg tttgaaagct 2401 ttaagtccta cgagggtttg ttctatttcc ttggttctat tgttaattat tcgcaagatc 2461 ccgaggtgca cttcaaatac atacaggctg cctgcaagac caaccagatc aaggaagtag 2521 agagaatctg tcgcgaatcg aattgctaca atgcggagcg tgtaaagaac ttcttaaagg 2581 aggccaagtt gaccgatcaa ttgcccttga ttattgtctg cgatcgcttt gactttgtcc 2641 atgatctggt gttgtatctt tatcgcaaca atttacagaa atacattgag atttatgtgc 2701 aaaaggtgaa tccctcacgt ttacccgttg tcgttggcgg cctcttggat gttgactgct 2761 cggaggatat cattaagaat ttgattttgg tcgttaaggg tcaattctca accgatgaat 2821 tggtagaaga agttgagaag cgtaatcgct tgaaattgtt gttgccctgg ttggaatctc 2881 gtgtccatga gggttgcatc gagcccgcta cccacaatgc tttggccaag atctacattg 2941 attcgaacaa caaccctgag cgtttcttaa aggagaacca gtactacgat agccgagttg 3001 tcggtcgcta ctgcgagaag cgcgatcccc acttggcttg tgtggcctat gaacgtggcc 3061 aatgtgaccg cgaattgata gccgtgtgca atgagaactc tttgttcaag agcgaagctc 3121 gttatttggt acgtagacga gatgcagaat tgtgggctga agtattggcc gaatccaatc 3181 cttacaaacg tcaacttatc gatcaagtag tgcaaactgc tctttcggaa actcaagatc 3241 ctgaagacat ctccgtcacc gtaaaggctt tcatgacagc cgatttaccc aacgaactaa 3301 ttgagttgtt ggagaagatc attttggact cttcagtatt ctctgatcat cgcaatttgc 3361 aaaacctctt gatcttgact gccatcaagg ccgatcgcac ccgtgtcatg gactacatca 3421 atcgtttgga caactatgat gctcccgata tagccaacat tgctatctcg aataaattgt 3481 acgaggaggc ctttgccatt ttcaagaaat tcgatgtgaa tacttctgcc attcaggttt 3541 tgattgaaca ggtcaataat ctggaaaggg cctacgaatt tgccgaaaga tgcaacgagc 3601 ccgccgtgtg gtcacaattg gccaaggctc aactggacaa gggattggtg aaagaagcca 3661 ttgactccta cattaaggcc gatgacccaa gcgcctacat ggatgttgtt tcagtagcct 3721 cccaatctga ttcctgggaa gatttggtgc gctatttgca aatggcccgc aagaaggccc 3781 gcgagtcata cattgaaagt gaattgattt atgcttatgc ccgcactggt cgtctagccg 3841 atttggaaga attcatctcg ggtcccaatc atgccgacat tcagaagatc ggtgacagat 3901 gtttcaacga tggcatgtac gatgccgcca aattgttgta caacaatgtc agcaactttg 3961 cccgcttggc catcaccctg gtgtatctga aggagttcca gggagctgtc gactctgccc 4021 gcaaagccaa ctccacgcgc acttggaaag aggtctgttt cgcctgtgtc gatgccgagg 4081 aattccgtct ggcacaaatg tgcggtctcc acattgtggt gcatgccgat gagctggaag 4141 acttgatcaa ctactaccag gatcgtggtt atttcgaaga attaatcgct ttactcgaat 4201 ctgctttggg tttggaacgc gctcacatgg gtatgttcac cgaattggct atactgtatt 4261 ccaaattcaa gccatcgaaa atgcgcgaac atttggaatt gttctggtca cgtgtcaata 4321 tccccaaggt tttgagagca gccgaatcgg ctcacctttg gtccgagttg gtattccttt 4381 atgataaata cgaggagtac gataacgctg tattggctat gatggctcat cccaccgaag 4441 cctggcgtga aggtcacttc aaagatatta tcacaaaggt tgccaacatt gaattgtact 4501 ataaggcaat tcaattctat ttggattaca aaccactcct actcaatgat atcttgttgg 4561 tattggcacc tcgcatggat cacacccggg ccgtttcatt ctttggcaaa accggtcact 4621 tggccttggt gaaaccctat ctacgctctg tacaatcgct taacaataag gccattaatg 4681 aggctttgaa tggtctacta atcgaagagg aagattatca aggcttgcgc aattccatcg 4741 atggttttga taacttcgat acaattgcat tggcccagaa attggagaaa catgaattaa 4801 ctgaatttag acgcattgct gcttatctct acaaaggcaa caaccgctgg aaacaatcag 4861 ttgaattatg taaaaaggat cgtttgtaca aggacgctat ggaatatgcc gccgaatctg 4921 gtaaacaaga gattgccgaa gaactgctgg cttggttcct cgaacgtaat gcattcgatt 4981 gttttgccgc ctgtttattc caatgttacg atttgttgag acccgatgtt atcatggaat 5041 tagcatggaa acacgatatt tccgactttg ccatgcctta catgattcaa gttgtgcgtg 5101 aatactgcgc caaagtggat aaactcgaac aaaacgaagc gcgacgagaa aaagaagacg 5161 aaacagttga acataaaaac atcattacca tggaacctca attgatgatt acagctggtc 5221 ctgcaatggg tatgccacca cagtatgctc aaaattatgc ggctgctgga caggcgccag 5281 gctatgcgcc caacatggct taccctggct atggaatgta ggcttctttg tcatacgtta 5341 ctatgtgtaa aaagaactac gaattaatct aacaaacata aacataaaaa acataaaatc 5401 ataactgata actaaaaaca aaaagattcc atgtttaata tattattaca tattataatt 5461 tttctttttc ttaaaaaaac caaactatga taagttcaat tccctaaaaa aaacaaaagt 5521 aacaaaaaca caaaaacttt agcaaacatt tatgcaacac ataagaacca tgataaccat 5581 cacccaacac caatcctctt cctatggaac aacaacagca aaaaacaaaa caacaacatt 5641 caaaacgttt agagatttgc gaattgcatc ttgttcttct tttggcgata tacgcatatg 5701 catataggca attaatacat atgttttctt tacgactaaa tcctataaat atttatttga 5761 tgactacaaa atgatcgatg ttgttatatt tatgccccat tatacataca tatatataaa 5821 aaaatacata tatgtatatt ggttttctct ttgtttgcct ttagatacat aaattgatta 5881 attttttagt ttatctttgt ttcaaccccc ttcataagtt aattttgctg ttctattttt 5941 aatcttccct atgttttcca acctttctcc ctctcgtttt atttgtattt atgtttaaaa 6001 cgcataaaat tatttgaaac ttatataaat attataattt tatctataaa tgtcgcataa 6061 tatggtcgtc atcgtattgc aaaaacaaca ataacaagaa aaaaataaat atttaatcta 6121 gagagaaaca aaaatgaacc tagaatgaga gaatatacat ttatattata tattattatt 6181 ttttttttca tattttatta ttctctttct ctttattaag tttaattaat taattaaaat 6241 aaacaattta atagtaatgc cgctccatca acaacaacaa caacaaaaac aagttacaac 6301 aaaaaatata cgctctatta tatataatcg aacgaaa