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LOCUS XM_013249157 2429 bp mRNA linear INV 02-SEP-2023 transcript variant X2, mRNA. ACCESSION XM_013249157 VERSION XM_013249157.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013249157.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2429 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..2429 /gene="LOC106085112" /note="lysine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins" /db_xref="GeneID:106085112" CDS 112..1845 /gene="LOC106085112" /codon_start=1 /product="lysine--tRNA ligase isoform X2" /protein_id="XP_013104611.1" /db_xref="GeneID:106085112" /translation="MAETEQLSKNELKRRLKAEQKAKEKAEKEASKAAAAPAAGGESK KKSASALEEEISPNEYFKLRSAAISDLKKSPETDPYPHKFHVSISLENYINKYSNLKD GEMLENETLSIAGRVHAIRESGAKLIFYDLRGEGVKLQVMANAKLYSNEQAFEVDTGK IRRGDIIGINGYPAKTKKGELSIVPKEIKLLSPCLHMLPHLHFGLKDKETRYRQRYLD LILNNRVREIFQIRAKIISYIRQFFDQMGFLEIETPMMNMIAGGATAKPFITHHNDLN MDLYMRIAPELYHKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHD IIEITEQLVSGMVKAIHGTYKIKYHPEGLEGPEEEIDFSPPFRRVSMIKTLEEKLNVK FPPSIDFNTKATNDFLSNLCTKHNVECPAPRTTARLLDKLVGEFIEETCINPTFICDH PQIMSPLAKYHRSEPGLTERFELFVMKKEVCNAYTELNDPVVQRERFEQQASDKAAGD DEAQLVDENFCTALEYGLPPTGGWGMGIDRLTMFLTDSNNIKEVLLFPAMKPDDPSRH VTDVNNTEEAK" misc_feature 118..1797 /gene="LOC106085112" /note="lysyl-tRNA synthetase; Region: PLN02502" /db_xref="CDD:215278" misc_feature 871..885 /gene="LOC106085112" /note="motif 1; other site" /db_xref="CDD:238398" misc_feature order(967..969,1033..1035,1039..1041,1057..1059, 1069..1071,1525..1527,1546..1548,1555..1557,1567..1569, 1723..1725) /gene="LOC106085112" /note="active site" /db_xref="CDD:238398" misc_feature 1030..1041 /gene="LOC106085112" /note="motif 2; other site" /db_xref="CDD:238398" misc_feature 1714..1725 /gene="LOC106085112" /note="motif 3; other site" /db_xref="CDD:238398" polyA_site 2429 /gene="LOC106085112" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttgtattgac gtttaaattt gtgtttgtgt gctgggcata gtatccgtat agtttaaaaa 61 ttttgtattt atccaagtta ttggtttaat ttcgttcatt ttcaaataaa tatggcagaa 121 actgaacaac tttcaaaaaa tgaactaaaa cgacgcttaa aggcggaaca aaaagcaaaa 181 gaaaaggcgg aaaaggaggc ctcaaaagcg gcagccgctc cagctgctgg cggcgagagc 241 aagaaaaaaa gcgcttccgc tcttgaagag gaaatctcac ctaatgagta ctttaaattg 301 cgttcggctg ctataagtga tctaaagaaa tctcctgaaa ccgatcccta cccacataaa 361 ttccacgtta gtatatcatt ggaaaactat attaacaaat actctaatct taaggatggt 421 gaaatgttgg agaacgaaac attgagtatt gcaggacgtg tccatgccat acgtgaatcg 481 ggggctaagc tcatttttta cgatttacgt ggcgaaggtg tgaaacttca agttatggca 541 aatgcaaagt tatacagcaa tgagcaggca tttgaagtag atacgggaaa aattcgtcgt 601 ggagatataa ttggtatcaa tggttaccca gcaaagacca aaaaaggaga attatcaatt 661 gttccaaagg agatcaaact actttctccc tgtttgcata tgttgccaca tcttcatttc 721 ggcttgaaag ataaagaaac ccgttatcgt caacgatatc tggatttgat tcttaacaac 781 agagtaaggg aaattttcca aatacgtgca aaaataattt cctacattcg tcaattcttt 841 gatcaaatgg gcttccttga aattgaaaca ccaatgatga acatgattgc tgggggagct 901 acggctaaac cattcattac gcatcacaat gatttaaaca tggatcttta catgcgtata 961 gcacctgaat tataccataa aatgttggtt gttggtggat tggatcgagt ctacgaaatc 1021 ggccgacaat tccgtaatga aggcattgat ttaactcaca atcccgaatt taccacatgt 1081 gaattttata tggcctacgc cgattaccat gatataattg aaataacaga acaattggtc 1141 tcgggcatgg taaaggccat tcacggcact tataaaatta aataccatcc cgaaggacta 1201 gaaggcccag aagaagaaat tgacttttca ccaccattta ggcgtgttag catgataaaa 1261 accctcgaag aaaaattaaa tgttaaattt ccaccttcaa ttgactttaa cactaaagcg 1321 acaaatgact tcctatccaa tttgtgtact aaacacaatg tggaatgtcc ggcgccaaga 1381 acaacagcaa gattgctcga taaactagtt ggggaattta ttgaagaaac atgtatcaat 1441 cccacattta tatgtgatca tcctcaaatt atgtctccct tggctaaata tcatcgcagt 1501 gaacccggtt taacggaacg ttttgaactt ttcgtaatga agaaagaagt ttgcaatgca 1561 tacaccgaat taaacgatcc cgtggtacaa agggaacgat tcgagcagca agctagcgac 1621 aaggcagcag gtgatgatga agctcaattg gttgatgaga acttttgcac agcactagag 1681 tatggactgc caccaacagg aggttggggt atgggtattg acagattaac catgttttta 1741 accgactcaa acaatattaa agaagttttg ttattccctg ccatgaagcc agatgatccc 1801 agtcgtcatg tcactgatgt caacaacact gaagaagcca aataagtttt tcataacaat 1861 gttatgtagc cgcatattta taataaacat taagtgttct tatttcactt ttattctatt 1921 gttctctaaa atatttgtaa tttatttgcc tcctcctcac ttctaaaaaa tctacagctt 1981 attttaaaat aataggcaga catttttgta atcctataat aaaactaatc aatccaaaat 2041 tatttggaat caaaaaaaaa aaaaaaaatg ctaaactaag tggtatattt tacgtagcag 2101 aaatgctaca aaaacattgg tatataggaa gctttttaaa ataaatatgt ttattttgta 2161 ataggtttca atcgccaaaa tcactaaagt tcccaaaacg gcaactctgt tttaataagt 2221 gaaaaagcgg atttccgaag ttcttaaaag aacgtagtac cacccttatg tgaggaatat 2281 cagatcgaat aaaacatcgt tttaagattt aaaaaaaaat aactgtaaca agcatttgac 2341 attttgagtt attgcaaaat caaaataaaa ctgaaataat tgtactcagc tgttcacatg 2401 atctcactca gctgagtgca ttctggtta