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LOCUS XM_013249156 2663 bp mRNA linear INV 02-SEP-2023 transcript variant X1, mRNA. ACCESSION XM_013249156 VERSION XM_013249156.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013249156.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2663 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..2663 /gene="LOC106085112" /note="lysine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:106085112" CDS 247..2079 /gene="LOC106085112" /codon_start=1 /product="lysine--tRNA ligase isoform X1" /protein_id="XP_013104610.1" /db_xref="GeneID:106085112" /translation="MLFLRTLTAAKRISSCQLFVTNTRVCLFSGTQTLGLPSKRTKLE LKRRLKAEQKAKEKAEKEASKAAAAPAAGGESKKKSASALEEEISPNEYFKLRSAAIS DLKKSPETDPYPHKFHVSISLENYINKYSNLKDGEMLENETLSIAGRVHAIRESGAKL IFYDLRGEGVKLQVMANAKLYSNEQAFEVDTGKIRRGDIIGINGYPAKTKKGELSIVP KEIKLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNNRVREIFQIRAKIISYIRQFF DQMGFLEIETPMMNMIAGGATAKPFITHHNDLNMDLYMRIAPELYHKMLVVGGLDRVY EIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDIIEITEQLVSGMVKAIHGTYKIKYH PEGLEGPEEEIDFSPPFRRVSMIKTLEEKLNVKFPPSIDFNTKATNDFLSNLCTKHNV ECPAPRTTARLLDKLVGEFIEETCINPTFICDHPQIMSPLAKYHRSEPGLTERFELFV MKKEVCNAYTELNDPVVQRERFEQQASDKAAGDDEAQLVDENFCTALEYGLPPTGGWG MGIDRLTMFLTDSNNIKEVLLFPAMKPDDPSRHVTDVNNTEEAK" misc_feature 355..2031 /gene="LOC106085112" /note="lysyl-tRNA synthetase; Region: PLN02502" /db_xref="CDD:215278" misc_feature 1105..1119 /gene="LOC106085112" /note="motif 1; other site" /db_xref="CDD:238398" misc_feature order(1201..1203,1267..1269,1273..1275,1291..1293, 1303..1305,1759..1761,1780..1782,1789..1791,1801..1803, 1957..1959) /gene="LOC106085112" /note="active site" /db_xref="CDD:238398" misc_feature 1264..1275 /gene="LOC106085112" /note="motif 2; other site" /db_xref="CDD:238398" misc_feature 1948..1959 /gene="LOC106085112" /note="motif 3; other site" /db_xref="CDD:238398" polyA_site 2663 /gene="LOC106085112" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 taagttaacg agatggacgg tcttgacagc atatttgctg cgctgtcaat atgaaaagct 61 attggaatgt tcggtcaatt tgtgaggtta ggaaagacac gcaattttca cgccgattgg 121 agtttttttg ctgggggctc ataggaaatc cctaaaagac ttcagtatat tagcttcgtt 181 accaaaagtg ttagcgatcg ttagcagtat tacttatgtt cagcatttga ataagataga 241 attataatgt tgtttctaag aactttaacg gcagcgaaga ggatttcgtc atgccagtta 301 tttgttacga atacacgggt ttgtctattc agtggcacgc aaactttagg tttaccaagc 361 aaaagaacta aacttgaact aaaacgacgc ttaaaggcgg aacaaaaagc aaaagaaaag 421 gcggaaaagg aggcctcaaa agcggcagcc gctccagctg ctggcggcga gagcaagaaa 481 aaaagcgctt ccgctcttga agaggaaatc tcacctaatg agtactttaa attgcgttcg 541 gctgctataa gtgatctaaa gaaatctcct gaaaccgatc cctacccaca taaattccac 601 gttagtatat cattggaaaa ctatattaac aaatactcta atcttaagga tggtgaaatg 661 ttggagaacg aaacattgag tattgcagga cgtgtccatg ccatacgtga atcgggggct 721 aagctcattt tttacgattt acgtggcgaa ggtgtgaaac ttcaagttat ggcaaatgca 781 aagttataca gcaatgagca ggcatttgaa gtagatacgg gaaaaattcg tcgtggagat 841 ataattggta tcaatggtta cccagcaaag accaaaaaag gagaattatc aattgttcca 901 aaggagatca aactactttc tccctgtttg catatgttgc cacatcttca tttcggcttg 961 aaagataaag aaacccgtta tcgtcaacga tatctggatt tgattcttaa caacagagta 1021 agggaaattt tccaaatacg tgcaaaaata atttcctaca ttcgtcaatt ctttgatcaa 1081 atgggcttcc ttgaaattga aacaccaatg atgaacatga ttgctggggg agctacggct 1141 aaaccattca ttacgcatca caatgattta aacatggatc tttacatgcg tatagcacct 1201 gaattatacc ataaaatgtt ggttgttggt ggattggatc gagtctacga aatcggccga 1261 caattccgta atgaaggcat tgatttaact cacaatcccg aatttaccac atgtgaattt 1321 tatatggcct acgccgatta ccatgatata attgaaataa cagaacaatt ggtctcgggc 1381 atggtaaagg ccattcacgg cacttataaa attaaatacc atcccgaagg actagaaggc 1441 ccagaagaag aaattgactt ttcaccacca tttaggcgtg ttagcatgat aaaaaccctc 1501 gaagaaaaat taaatgttaa atttccacct tcaattgact ttaacactaa agcgacaaat 1561 gacttcctat ccaatttgtg tactaaacac aatgtggaat gtccggcgcc aagaacaaca 1621 gcaagattgc tcgataaact agttggggaa tttattgaag aaacatgtat caatcccaca 1681 tttatatgtg atcatcctca aattatgtct cccttggcta aatatcatcg cagtgaaccc 1741 ggtttaacgg aacgttttga acttttcgta atgaagaaag aagtttgcaa tgcatacacc 1801 gaattaaacg atcccgtggt acaaagggaa cgattcgagc agcaagctag cgacaaggca 1861 gcaggtgatg atgaagctca attggttgat gagaactttt gcacagcact agagtatgga 1921 ctgccaccaa caggaggttg gggtatgggt attgacagat taaccatgtt tttaaccgac 1981 tcaaacaata ttaaagaagt tttgttattc cctgccatga agccagatga tcccagtcgt 2041 catgtcactg atgtcaacaa cactgaagaa gccaaataag tttttcataa caatgttatg 2101 tagccgcata tttataataa acattaagtg ttcttatttc acttttattc tattgttctc 2161 taaaatattt gtaatttatt tgcctcctcc tcacttctaa aaaatctaca gcttatttta 2221 aaataatagg cagacatttt tgtaatccta taataaaact aatcaatcca aaattatttg 2281 gaatcaaaaa aaaaaaaaaa aatgctaaac taagtggtat attttacgta gcagaaatgc 2341 tacaaaaaca ttggtatata ggaagctttt taaaataaat atgtttattt tgtaataggt 2401 ttcaatcgcc aaaatcacta aagttcccaa aacggcaact ctgttttaat aagtgaaaaa 2461 gcggatttcc gaagttctta aaagaacgta gtaccaccct tatgtgagga atatcagatc 2521 gaataaaaca tcgttttaag atttaaaaaa aaataactgt aacaagcatt tgacattttg 2581 agttattgca aaatcaaaat aaaactgaaa taattgtact cagctgttca catgatctca 2641 ctcagctgag tgcattctgg tta