PREDICTED: Stomoxys calcitrans serine--tRNA ligase, mitochondrial

LOCUS       XM_013248272            1619 bp    mRNA    linear   INV 02-SEP-2023
            (LOC106084534), transcript variant X2, mRNA.
ACCESSION   XM_013248272
VERSION     XM_013248272.2
DBLINK      BioProject: PRJNA1009844
KEYWORDS    RefSeq.
SOURCE      Stomoxys calcitrans (stable fly)
  ORGANISM  Stomoxys calcitrans
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Muscoidea; Muscidae; Stomoxys.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_081555) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 2, 2023 this sequence version replaced XM_013248272.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_963082655.1-RS_2023_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/29/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1619
                     /organism="Stomoxys calcitrans"
                     /mol_type="mRNA"
                     /db_xref="taxon:35570"
                     /chromosome="4"
     gene            1..1619
                     /gene="LOC106084534"
                     /note="serine--tRNA ligase, mitochondrial; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 Proteins"
                     /db_xref="GeneID:106084534"
     CDS             260..1612
                     /gene="LOC106084534"
                     /codon_start=1
                     /product="serine--tRNA ligase, mitochondrial isoform X1"
                     /protein_id="XP_013103726.2"
                     /db_xref="GeneID:106084534"
                     /translation="MEVLRKIGNSYAARRQQDHPVLCNWSIALVIPTPRCAKIQRFNL
                     MKIPLRSFCAKPVCAIISEDLHHYGSTSNLDKMEQNVLLRKGSNNIPVIRELIKKLDM
                     KNDSDVAKLKGELSKLPNLTHPRIVNYGDEPKELEQFSPSDSFPTHATEFSEVAKYMN
                     IFRMDHLGNYTGHKSYYLFGKLAELEQAIKEYTVQQLLQNNFSLISVPDILPKEVIEG
                     CGMNTDGERTQVYKLDSGLCLSGTSEMALAGFFENQVLEEKQLPIKVAAVSRCYRAET
                     SGLNEEKGIYRVHQFTKVEMFAICAESQSEDVLELFKDLQLENFKKLNLKIRLLDMPP
                     SELGAPAYQKYDIEAWMPGRKVWGEISSSSNCTDYQAKRLNIRYKTNKGETKFAHTVN
                     GTAAAIPRLLIAILESNQVDKNSIEIPKVLGEYMKNCSITKDKLIPEIKLLKHLKHDI
                     "
     polyA_site      1619
                     /gene="LOC106084534"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 atcgtttgtc ggcggcaatg gaacgccata gcattgttcg attgtttagt tcccggaccc
       61 cctaacctcc ctcgccgaac aagcagtcaa gcagtcgctt tcgagtgcct tttcctgcca
      121 ttaaataaag ctcggagtcg atattccaaa atacaaatca aatttttatt gccaccttta
      181 tatatttaaa gacgtccttc actggattta tatttgctcc ggaagtcaaa tgcgagtatt
      241 catatatcac taaacggata tggaagtgct caggaaaatc ggaaatagct atgccgcccg
      301 tagacagcaa gatcatcctg ttttgtgcaa ttggtcaata gcacttgtga tccctacacc
      361 cagatgtgca aaaattcaaa ggtttaatct tatgaaaata cccctgcgtt ctttctgtgc
      421 caaacctgtt tgtgccataa tatctgaaga tttacatcat tatggatcta cctctaattt
      481 ggacaaaatg gaacagaacg tcttgctgcg aaagggctcc aataatatac cagtaatacg
      541 agagttaata aagaaattgg atatgaaaaa cgactctgac gttgcaaaac taaaggggga
      601 gctgtcaaaa ctgcccaatc ttacacatcc tagaattgtg aattatgggg atgaacctaa
      661 ggaactggag caattctctc cctctgattc ttttcccact catgctactg agttttctga
      721 agtagcaaag tatatgaata tcttccgcat ggaccatttg ggtaattata cgggacacaa
      781 aagttattac ttgtttggaa aattggctga actagaacaa gctataaagg agtacacagt
      841 tcaacaattg ttgcaaaata atttttcttt aatctctgtt cctgatattc tgcctaagga
      901 ggtcatagag ggatgtggca tgaataccga tggtgaaagg acacaagttt acaaacttga
      961 ttctggattg tgcttgtctg gcacttctga gatggctttg gctggtttct tcgaaaatca
     1021 agtattagaa gaaaagcaac tgccaattaa agtggctgct gtaagccgtt gttatagagc
     1081 agaaacgtcg ggattaaacg aggaaaaggg tatatatagg gtacatcaat ttacaaaagt
     1141 tgaaatgttt gcgatatgtg ccgaaagtca atcagaagat gttctggaac tcttcaagga
     1201 tctgcaactg gaaaatttta agaagttaaa cttaaaaata cgtctattag atatgccacc
     1261 atcagaattg ggtgctccag cctatcaaaa atatgacata gaagcttgga tgccaggcag
     1321 aaaagtttgg ggagaaattt ctagcagtag taactgcact gattaccaag caaaacgact
     1381 caatataaga tataaaacca ataagggtga gaccaaattt gcccatacag taaatggaac
     1441 agcagctgcc atacctagat tattgatagc aatacttgaa tcaaaccagg ttgataaaaa
     1501 ttcaattgag attcctaaag tacttggtga atacatgaag aattgtagca ttacaaaaga
     1561 taaattgata ccagaaataa aattgttaaa gcatttaaag catgatattt aaagaaaca