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LOCUS XM_013248253 1580 bp mRNA linear INV 02-SEP-2023 (LOC106084521), transcript variant X2, mRNA. ACCESSION XM_013248253 VERSION XM_013248253.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013248253.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1580 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..1580 /gene="LOC106084521" /note="DEAD-box helicase Dbp80; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins" /db_xref="GeneID:106084521" CDS 145..1536 /gene="LOC106084521" /codon_start=1 /product="DEAD-box helicase Dbp80" /protein_id="XP_013103707.1" /db_xref="GeneID:106084521" /translation="MEDGWAKKAEDQVSKLVSNLEIESKEETKESTDTPDVASPAETS LLLKIIRKGLVESKSDLEVQRKDPSSPLYSVKTFEKLHLKPEILKGIYAMGFNAPSKI QENALPILLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDTKLDYPQVLCLSPTYELAI QTGEAAARMAQFCPDIKLKFAVRGEEVAPGTKLTDHIIIGTPGKVLDWGLKYRFIDLK KIRVFVLDEADVMIATQGHHDQCIRIHKQLSPKCQMLFFSATYDKEVMEFAEHIVPEA NIIRLQREQESLDNIKQYYVRCNSEEEKYQAIQNIYGSITIGQAIIFCHTRKTASWLA GKLSTDGHSVAVLSGELTVEQRLAVLDRFRIGLEKVLITTNVLSRGIDVEQVTIVVNF DLPMDAKGRADCETYLHRIGRTGRFGKNGIAINLVDSEKSMEICRAIENHFKKTIKEL NADNTEEIEKIGS" misc_feature 325..999 /gene="LOC106084521" /note="N-terminal helicase domain of the DEAD-box helicase superfamily; Region: DEAD-like_helicase_N; cl28899" /db_xref="CDD:475120" misc_feature order(514..534,820..822) /gene="LOC106084521" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:350670" misc_feature 1015..1425 /gene="LOC106084521" /note="C-terminal helicase domain of the DEAD box helicases; Region: SF2_C_DEAD; cd18787" /db_xref="CDD:350174" misc_feature order(1282..1284,1288..1290,1381..1383,1390..1395) /gene="LOC106084521" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350174" polyA_site 1580 /gene="LOC106084521" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tgaatatgcg atggcaactc taaaatttgc accgtgtaca cggtacacgg taaatcgcca 61 attttgtttg caagaataga atattcgatc ttcctgtgtc aggacaaaaa gtacattata 121 gacaaatcgc tacatagcag aagcatggag gacggttggg ctaaaaaggc tgaggaccaa 181 gtgtccaagt tggttagtaa tctggaaatc gaaagtaaag aagaaacaaa ggaatctaca 241 gatacgcctg atgttgcaag ccctgcagaa acaagccttc ttttgaagat cattcgcaaa 301 ggtttagtag aatcaaaatc tgacttagaa gttcaacgaa aggatccctc atcaccacta 361 tactcagtga aaacttttga gaaattacac ttaaaaccgg aaatactaaa gggaatttat 421 gcaatgggtt ttaatgcgcc atccaaaatt caagaaaatg ctctaccaat tttgttagct 481 gatcctcctc aaaatatgat agcacaaagt caatcgggta caggaaaaac tgctgcattt 541 gttcttgcta tgctaagtag agtggataca aaactagatt accctcaggt tctctgttta 601 tctcccacat atgaattagc cattcaaact ggggaagccg ctgcaaggat ggcacaattt 661 tgtccagata ttaaattgaa atttgcagtt cgaggagaag aagttgctcc gggaactaaa 721 ctaactgacc atataatcat tggcacaccg ggaaaagtac ttgattgggg cctcaaatat 781 agatttattg atttaaagaa aattcgtgtg tttgttttgg acgaagctga tgttatgata 841 gccacccaag gtcaccatga tcaatgtatt cgaattcata agcaactttc cccaaagtgt 901 caaatgttgt ttttttcggc aacttatgac aaagaagtaa tggaatttgc cgaacatatt 961 gtaccagaag caaatattat aagattacaa agggagcaag aatctctaga caacatcaaa 1021 caatattatg ttcgttgcaa ttcggaagaa gaaaagtatc aagccattca aaatatttat 1081 ggcagcatta caattggaca agctattatc ttttgtcata ctcgaaaaac tgctagttgg 1141 cttgctggca aactgtcgac tgatggacat tccgtggccg ttctctctgg tgagctcaca 1201 gtggagcaac gtttagctgt tctcgaccga tttagaattg gcttggaaaa agtattaata 1261 actacaaatg ttttgtctcg aggtatcgat gttgagcaag tgactattgt ggtaaatttc 1321 gatttaccca tggatgccaa gggtagggct gattgtgaaa cctaccttca tcgtattggt 1381 agaacaggac gcttcggtaa aaatggcata gccataaatc ttgtggatag cgaaaaatca 1441 atggagattt gtcgagcaat tgaaaatcat ttcaagaaga caattaaaga attgaatgct 1501 gacaatacgg aagagattga aaaaattgga tcctaaatac cattcatgtg aaataaactc 1561 tttacaggct atttgtaaaa