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LOCUS XM_013248252 1599 bp mRNA linear INV 02-SEP-2023 (LOC106084521), transcript variant X1, mRNA. ACCESSION XM_013248252 VERSION XM_013248252.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013248252.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1599 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..1599 /gene="LOC106084521" /note="DEAD-box helicase Dbp80; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins" /db_xref="GeneID:106084521" CDS 164..1555 /gene="LOC106084521" /codon_start=1 /product="DEAD-box helicase Dbp80" /protein_id="XP_013103706.1" /db_xref="GeneID:106084521" /translation="MEDGWAKKAEDQVSKLVSNLEIESKEETKESTDTPDVASPAETS LLLKIIRKGLVESKSDLEVQRKDPSSPLYSVKTFEKLHLKPEILKGIYAMGFNAPSKI QENALPILLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDTKLDYPQVLCLSPTYELAI QTGEAAARMAQFCPDIKLKFAVRGEEVAPGTKLTDHIIIGTPGKVLDWGLKYRFIDLK KIRVFVLDEADVMIATQGHHDQCIRIHKQLSPKCQMLFFSATYDKEVMEFAEHIVPEA NIIRLQREQESLDNIKQYYVRCNSEEEKYQAIQNIYGSITIGQAIIFCHTRKTASWLA GKLSTDGHSVAVLSGELTVEQRLAVLDRFRIGLEKVLITTNVLSRGIDVEQVTIVVNF DLPMDAKGRADCETYLHRIGRTGRFGKNGIAINLVDSEKSMEICRAIENHFKKTIKEL NADNTEEIEKIGS" misc_feature 344..1018 /gene="LOC106084521" /note="N-terminal helicase domain of the DEAD-box helicase superfamily; Region: DEAD-like_helicase_N; cl28899" /db_xref="CDD:475120" misc_feature order(533..553,839..841) /gene="LOC106084521" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:350670" misc_feature 1034..1444 /gene="LOC106084521" /note="C-terminal helicase domain of the DEAD box helicases; Region: SF2_C_DEAD; cd18787" /db_xref="CDD:350174" misc_feature order(1301..1303,1307..1309,1400..1402,1409..1414) /gene="LOC106084521" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350174" polyA_site 1599 /gene="LOC106084521" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tatgcgatgg caactctaaa atttgcaccg tgtacacggt acacggtaaa tcgccaattt 61 tgtttgcaag aatagaatat tcgatcttcc tgtgtcagga caaaaagtgg tttctgacag 121 ttgtttccag tacattatag acaaatcgct acatagcaga agcatggagg acggttgggc 181 taaaaaggct gaggaccaag tgtccaagtt ggttagtaat ctggaaatcg aaagtaaaga 241 agaaacaaag gaatctacag atacgcctga tgttgcaagc cctgcagaaa caagccttct 301 tttgaagatc attcgcaaag gtttagtaga atcaaaatct gacttagaag ttcaacgaaa 361 ggatccctca tcaccactat actcagtgaa aacttttgag aaattacact taaaaccgga 421 aatactaaag ggaatttatg caatgggttt taatgcgcca tccaaaattc aagaaaatgc 481 tctaccaatt ttgttagctg atcctcctca aaatatgata gcacaaagtc aatcgggtac 541 aggaaaaact gctgcatttg ttcttgctat gctaagtaga gtggatacaa aactagatta 601 ccctcaggtt ctctgtttat ctcccacata tgaattagcc attcaaactg gggaagccgc 661 tgcaaggatg gcacaatttt gtccagatat taaattgaaa tttgcagttc gaggagaaga 721 agttgctccg ggaactaaac taactgacca tataatcatt ggcacaccgg gaaaagtact 781 tgattggggc ctcaaatata gatttattga tttaaagaaa attcgtgtgt ttgttttgga 841 cgaagctgat gttatgatag ccacccaagg tcaccatgat caatgtattc gaattcataa 901 gcaactttcc ccaaagtgtc aaatgttgtt tttttcggca acttatgaca aagaagtaat 961 ggaatttgcc gaacatattg taccagaagc aaatattata agattacaaa gggagcaaga 1021 atctctagac aacatcaaac aatattatgt tcgttgcaat tcggaagaag aaaagtatca 1081 agccattcaa aatatttatg gcagcattac aattggacaa gctattatct tttgtcatac 1141 tcgaaaaact gctagttggc ttgctggcaa actgtcgact gatggacatt ccgtggccgt 1201 tctctctggt gagctcacag tggagcaacg tttagctgtt ctcgaccgat ttagaattgg 1261 cttggaaaaa gtattaataa ctacaaatgt tttgtctcga ggtatcgatg ttgagcaagt 1321 gactattgtg gtaaatttcg atttacccat ggatgccaag ggtagggctg attgtgaaac 1381 ctaccttcat cgtattggta gaacaggacg cttcggtaaa aatggcatag ccataaatct 1441 tgtggatagc gaaaaatcaa tggagatttg tcgagcaatt gaaaatcatt tcaagaagac 1501 aattaaagaa ttgaatgctg acaatacgga agagattgaa aaaattggat cctaaatacc 1561 attcatgtga aataaactct ttacaggcta tttgtaaaa