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LOCUS XM_013247894 9089 bp mRNA linear INV 02-SEP-2023 (LOC106084312), transcript variant X2, mRNA. ACCESSION XM_013247894 VERSION XM_013247894.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013247894.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..9089 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..9089 /gene="LOC106084312" /note="uncharacterized LOC106084312; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:106084312" CDS 2569..7863 /gene="LOC106084312" /codon_start=1 /product="uncharacterized protein LOC106084312" /protein_id="XP_013103348.2" /db_xref="GeneID:106084312" /translation="MKYPQLVSPRAVNAISDWLVSRLEQLGVESPQIYTRLLLSLLQS SVQVNDPIEFSNLEAFIANYKGGHSKRFHLPSDTETLKKLNAVQCLREIVSTEQETAA IERLVDELCEKLKDIEKRSQELNDEERFLIDTNLNIESLPTTSEGNSHQLTQEQDPKQ QQQSSVIGFDQQHHFCQQHILPASSSQVAASIAIHSRRLVPPSNENVLNDSDNDPKKR YFRAFPALSKEMEDSFRIWRRNAKSLTWPVVGRASSSIIGDTVRVHKSIDSSSGNLYA ESRSACEKGIEKRLKAASGGGVVDPVEGFQTHKIRPEVGAGDISSGSVVAVDAIGGEV QGAAASAKKKSKRRRNQALCKGKPIQSIRNKAPAGGSNSNTCGSASVATAGGGGGKFY SQHQNYRNTTPAWDTDFKGCWEMGPDLIKEFLARQKGATKRSRSNSDSLDQEMRNEYK MLNEMPKDDELLGGIERPLMKRYIDLTFCCGEDDERANYEVLEDGVDYVDEDYDDENT LASIEELTASGVGGGNGNARRLYQREGKLQKPLVICNPIEENDIFEETSDSVDNLDFA NFKAKFNSSVEALWKDAEPPMTNNSTANSSAYGQVESGVAAAAAAAKANTIGISSAFY ATTSLNALAPFKQDLWNFWSNYNQHHYDQMTKFSNTTSTASSMTMPTTTTRLDDSSAS SGAGADIANSSDYFSMPSNLDDFDKSVGAMRRVNEAGASMGAHTPSISVFLQNSIWSS SGDCVDAVGAAAAAETDESFLYKVWHSNKKLSQLDVGKNKNEKMAHMGMTEGDNGGNR GYNKAKEAVGNLESGGGAKLEFPPYSSLKWSEGINAGPAYNNLRSHMAAAHTDLESLN KNDGKIVSFNSAAGTVTGATWEAPAFGENSQPDLKSWCASNPMSLTEMYGSDVCDSIT EENEPLETGAMETSVTLPNHCSATSGFIAYSRVKQCGLIQPQSKPLQLQSANAAAAAA AHLSNDYFRGGEEENLLTSERTHFNPIETYVDGHTFNISSALDSVDFERSASGFLCYD SNEYLEYTRNDIYLADEEVANTNLMNFSATASSQITDGRVHVAKEKPECREMFVLKFR LRRSGEIACQTEEIDFQLAAAKMANDQLPPIESMVEVPMFSHTSLTLSRQANNEAIMA AVTKAVAAAAKAAAEQGLNAGHSSLAWIPATRNDCTQSWVQDVSLCDEVDFCRATASA EQLSQFWSMQEVEKQCHQRRLPASAFQRSDLERTDDNSMDNSSHTLWGMCAVCNSCDY GKSLPANRLLRDELQREADEIMSDLRYMQDLYIGEADSVADTVMAHEVEGDRNSEILK NIDNEREHHHHKQQQQQPNEASAAAVVDQAQASMLLKVNQLIEDLLRPEGKTAKLFKA KFEEKPETETPEKLPVADWAMNMDDDAVDNSSSWHFGGSGRADTADGHANLSNIWQHE PIDQNNTEAERKLVCMKPMKLLRQVGGSLNEEDLYVDNLNWEHENLAKIWQRDTMPSA DTTSSPNAAKAEHKLAQSEENLEDNRNIVEQKNLKNLQNNATHTPPTVSSSSNSNSNS AAVTYKRVQHFLNSSAAKLKLAANRKRRHSASQNFYHHQNQQQVQSQQEQNFQFGHSN SNNNNNNNNSSSASHNSNQISSNNNNNNVNITDLNRYKKTNEEELALSLEPKQTIITC KYWTTTTNGTQASMDSAAAAMMLLAAAANKSNVGGGSGGGIMATTNTTTTTSNTYEDT NDEGIMLEDNTFGNTFSCLIDKNASILKHVMMTRPLTR" polyA_site 9089 /gene="LOC106084312" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgagtcgtgt agagtagttg cgttctgttt tgaaaccatt cagtttagtt gtgctgcatg 61 cactcacact gcgctccgtt tgttcgcccg ccgctcgctc gctcgctcac tcacttgaca 121 tcaactactt ctgctcagtg tgtgctccta gtctacattt taaagaataa tattaaaaaa 181 aaaattatta aaaaaaaaat taataacgca cgtaccaact actataatgc cgcggagctt 241 aatggaagaa taaaagcaga caaacacaca catgcacaga aacaaacata acacaaacta 301 aatgattttg attttttctg ttgctctatt gttttaaaca cataattgaa tgacgtacca 361 actaacataa caaattgaac gagcttatca caaaaaatat gtaaatcatt ttgacttgag 421 gaaaagtgcc aacacaagaa gtcaactttt ctgaaacgac tttaaacgaa tgaattaaag 481 aaaaaaaatt aaacgaaaaa atacgacatt tacacgagat aaataatttt aaggcgtacc 541 tacagtaaaa aaaatattaa cctaaccaac cacacacaaa ctaaaagaaa tcaacagtta 601 tttgcttcaa ataaatctaa aagaattaaa actcaaagca aaagtggaac tttaacttgg 661 aggattcagt ttgtcaaata ctgaatgaaa gacaagccat agatatatga gaggacaaca 721 acaacaacaa aagcaaaatc cacaaacaat ttggggctag aaaataaacg caaagaaaat 781 caaatcttaa tttttaaatt aagagccaac aaaaacaaga aaaacgagca aaatggttaa 841 ttaaaaaatt aaaagaaaac accaacagca aaaatttgca ttgcaaacaa tgcaaaaatc 901 acacaagaac aaccacaaca gcaacaatac caccacacca ttctagaaaa acaaacatag 961 cacagcaaca actgaaaacg cagacaacaa caacaacaac aacataaaga taaattcgat 1021 tgcaacattg tattaagttt tcacctacat aacaacaaga atccagacaa agctagacca 1081 gctcacccaa gccagaggaa tagaataaca cttaatggtg ttttaatagc caacaagttt 1141 atctcccccc ccgcctagtt aattaattga tttctgaagt gaaaccagag attttgtcaa 1201 caatttttct gtctagctga ggccattgca ccaacaagca gcatcctccg tcaccactac 1261 tgctactaca tcataaaagt cgtggcttta ttaattgtgc tgggaataag tttctgttga 1321 ggacacacca gcaatgctcg tggtcaagat acacatccag gccataagca cataacgtta 1381 gatgttgttg ttgtttcctt aaagttttcg gttgaatttt ttaattttgt gttaccacaa 1441 ttttggtttg gatatttttt tcctagcgaa gaagcagcaa gcagtcatac aaccagtcaa 1501 tttagcctcc agtttattct aaaaggcggt gcaagcagat aggcttaacc aaaaggggaa 1561 atcccacaac ttgaaccaag gaataaacga cgaacacaga ttgctaaagg gcggcttata 1621 tacacaaaca gcaacagttt gtcattatat gtatgtgaga aaaaatgttg ccgcataaac 1681 tagaatatat tgggaaaaat gattcgctga acatggaaac gttttgggaa gctgctttgt 1741 actccgttgc tgcctctgcc gccgccgctg ctgttgtttc agctgaaagg actgtcgctg 1801 ctgctgttgt tgatactgtt tgccaagcat acaaggccca cttgctgcca ccaagtgttg 1861 caatagctac tcacagtgtt gctgcaaact ttgctcacac cacaacatat gacgatcaac 1921 aataaatcaa tcgaaagaaa acaaaaaaca aagaacgcca aaatccaatc caaaatccaa 1981 caacaacaac aattaagaag aacatcattc tgatacgcaa gattttagaa gaaaatcctt 2041 acagcaacaa caaaaaagcg ttaatcaata ataataatta aaatataggc aaaacaaaaa 2101 aaacgagaag tcacctttaa ctcaaccaaa aagccaaaac aacaaaaaat tatatcacct 2161 ttaaaacacc ccttccccta cacgagtaaa accatcactg gttcacaagt aattgtatat 2221 ttttttttgc tcgcacaagt aagtgagaaa atcgaaggcc gcatttctct acatcccatt 2281 aaaattattc gggtagtaaa gtatagaagc ttgcagtctc aagaagcagc caacgaagat 2341 tatctagctg tgcagtttca aaaaagtcaa tcagtcagtc tgtctgtcag cccattgtgg 2401 acaaaatcat ttttagaccc ttcagctaca gagatcatat gattttgttg tattcacaag 2461 gacttggaca atttgttggc ataccaacat caccctcact acttggcaga gaaaagcagg 2521 ataatccaat acagcaattt cagcaaaatt cttgtcaaaa gaacaggtat gaagtatcct 2581 caactagtat cgcctcgtgc cgtgaacgcc atctctgatt ggttagtatc acgtttggag 2641 caattaggcg tcgaatcacc ccagatctat acaagacttc tactatctct cttacaatcg 2701 tcagttcaag taaacgatcc aattgaattc agcaacttgg aagcatttat cgctaattac 2761 aaaggtgggc atagcaaacg ttttcattta ccctccgata cggagactct aaaaaaatta 2821 aatgctgttc agtgtttaag ggagattgtg tcgaccgaac aagagaccgc tgctattgaa 2881 agactagtcg atgaactgtg tgaaaaatta aaggatattg agaaacgtag tcaagaactt 2941 aatgatgagg aacgctttct aatcgacacc aatttgaaca ttgaatcact accaacgacc 3001 agtgagggca atagccatca attaacgcaa gagcaggacc caaagcagca gcagcagtcc 3061 tcagtgattg gttttgatca acagcatcat ttttgccaac agcatatttt gcccgcgtcg 3121 tcttcgcagg ttgccgcttc gattgccata cactctcgtc gtctagtgcc accaagtaat 3181 gaaaatgttt taaacgacag cgacaacgat cccaagaaac gctatttccg tgcctttcct 3241 gcattgtcga aggaaatgga agattccttc cgcatatggc gtcgtaatgc aaaatcttta 3301 acttggccag ttgtgggacg tgcttcttct tcaattattg gtgacactgt tcgtgtccac 3361 aaatccatag actccagtag cggtaattta tacgccgaaa gccgtagcgc atgcgagaaa 3421 ggcattgaaa agagattgaa ggcggctagt ggtggaggtg ttgtcgatcc tgtggagggt 3481 tttcaaacac ataaaataag gccagaggtt ggcgcaggag atattagtag tggcagtgtg 3541 gtggcagtgg atgccattgg tggcgaagtt caaggagcag cggcaagtgc aaaaaagaaa 3601 tctaaacgtc gccgtaatca agctttgtgc aagggtaagc ccatccagag tatacgcaat 3661 aaagccccag ctggtggcag caattctaat acgtgtggct cagccagtgt ggcaacggct 3721 ggtggcggtg gtggtaaatt ctatagtcaa caccaaaatt atcgcaacac taccccagct 3781 tgggacactg atttcaaagg gtgctgggaa atggggccgg atctgattaa ggagtttttg 3841 gcccgccaaa agggagccac taaacgcagt cgcagcaact ccgatagctt ggatcaagag 3901 atgcgtaacg aatataagat gcttaatgaa atgcccaagg atgatgaatt gcttggcggt 3961 atagaacgac ctttgatgaa gcgctacata gatctaactt tttgttgtgg tgaggacgat 4021 gaacgcgcta actatgaagt gttggaggac ggtgttgatt atgttgatga ggactatgat 4081 gatgagaaca ctttggcttc catagaagag ctgacggcca gtggtgttgg tggcggcaat 4141 ggcaatgctc gacgtttgta tcagcgtgag ggtaaattgc agaaacctct ggtgatttgc 4201 aaccccatag aagagaatga catttttgaa gagacctcgg actcggtgga caatttagat 4261 tttgccaatt tcaaggccaa attcaacagc agcgttgagg ctttgtggaa agatgcagag 4321 ccgcctatga caaacaactc gacagccaac tctagtgctt acggtcaggt tgagagtggt 4381 gttgccgctg ctgctgctgc tgccaaagcc aacacaattg gaatttcttc ggctttttat 4441 gccaccacct cgctaaatgc tttggctcca ttcaaacagg atttgtggaa cttctggtcc 4501 aactacaatc aacatcacta cgaccagatg acgaaattct ccaacaccac ttcaaccgca 4561 tcgtccatga cgatgccgac aacgacaaca cgtttagatg atagtagcgc tagttctggc 4621 gctggcgccg atattgcaaa ttcaagtgat tacttctcaa tgcccagtaa tttggatgat 4681 ttcgacaagt ctgtgggtgc aatgcgtcgc gtaaatgaag ctggtgcttc catgggtgcc 4741 cacacaccct cgataagtgt attcttgcag aattccattt ggtcctcatc gggtgattgt 4801 gttgatgctg ttggtgctgc cgctgccgca gagacggatg aaagcttcct ctacaaagtg 4861 tggcactcga ataagaaatt aagtcaattg gatgtgggga aaaataaaaa cgaaaagatg 4921 gctcacatgg gaatgactga aggagataat ggtggaaatc gtggctataa taaggctaaa 4981 gaagccgtag gtaacttgga atcaggaggt ggtgctaaat tggaatttcc tccttacagt 5041 agtttgaagt ggtcggaagg aatcaatgcc gggccagctt ataataattt gcgctctcac 5101 atggcagcag cccataccga cttggagagc ctaaacaaaa atgatggcaa aattgttagt 5161 tttaattctg ctgcgggcac agtaacaggt gccacctggg aagccccggc ctttggggaa 5221 aactcacaac ctgacctcaa gtcttggtgc gcctccaatc ccatgtccct gaccgaaatg 5281 tatggcagcg atgtttgcga tagcataact gaagaaaatg agccgctgga aactggggct 5341 atggaaactt cggtcacatt gcccaatcac tgctctgcca ccagtggttt catagcctat 5401 tctcgcgtta aacaatgcgg cctcattcaa ccccaaagta agcccttgca gcttcaaagt 5461 gccaatgctg ctgctgctgc tgctgctcac ctctccaatg actactttcg tgggggtgaa 5521 gaggagaacc ttttgacttc ggagcgcaca cattttaatc ccatcgagac ctatgtggat 5581 ggtcacactt tcaatattag cagtgctctt gattcggtgg actttgaacg cagtgccagc 5641 ggatttttgt gctatgattc caatgaatat ttggaatata ctcgcaacga catctatttg 5701 gccgacgagg aggtggccaa tacgaatttg atgaatttct cggccaccgc ttcgtctcag 5761 atcactgatg gccgcgtaca tgttgccaaa gaaaaaccgg agtgcaggga aatgtttgtg 5821 ctgaagtttc gccttaggcg atcgggagag atagcttgtc aaacggagga aatcgacttt 5881 caattagccg ccgccaaaat ggccaacgat cagctgccac ccattgagag catggtggaa 5941 gtgcctatgt tttcccatac ctcgttgact ctgagccgac aggccaacaa tgaagccatt 6001 atggcggccg ttaccaaagc cgtggctgcc gcagccaaag cggcagctga acagggtctg 6061 aatgcaggtc atagttccct cgcttggata cccgccactc gcaacgattg cactcagtcc 6121 tgggtgcagg atgtctcgct ctgtgatgaa gtagattttt gcagagccac agcctctgcc 6181 gaacaattga gccaattttg gtccatgcaa gaggtggaaa agcaatgcca tcaacgccgt 6241 ttgccagcca gtgcttttca gcgctccgat ctggagagaa cggatgacaa ctccatggat 6301 aactcctcgc ataccctgtg gggcatgtgt gctgtatgca atagttgtga ttacggcaag 6361 tctttgccag cgaatcgtct gctgcgagat gaattgcaac gggaagccga tgaaataatg 6421 agtgatttgc gttatatgca agatctgtat ataggtgaag ccgattcggt agcagatacg 6481 gttatggccc atgaagtgga gggcgatagg aatagtgaaa ttttgaagaa tatagacaat 6541 gaaagggaac atcatcatca taagcagcag cagcagcagc cgaatgaagc atcagctgct 6601 gctgttgtag atcaagcaca ggcctcaatg ttgttgaagg ttaaccagtt gatagaggat 6661 ttacttaggc ccgagggaaa aacggcaaag ctcttcaagg caaaattcga agaaaagccg 6721 gagacggaga caccagagaa attgcctgtg gctgactggg ccatgaatat ggacgatgat 6781 gctgtagaca attcaagttc atggcatttt ggtggcagtg gcagagcaga cactgccgat 6841 ggccatgcca acttaagcaa catttggcaa catgaaccga ttgaccagaa caacactgag 6901 gccgaacgaa aacttgtctg tatgaaaccc atgaaactat tgcgccaagt aggaggttcc 6961 ctcaacgaag aggacttgta tgtggataat ttaaattggg aacatgaaaa tctggccaag 7021 atatggcaaa gggatacgat gcccagcgct gacacaactt cttccccaaa tgctgcaaaa 7081 gcagagcata aattggccca aagtgaggaa aacctggagg ataatcggaa tattgtagag 7141 caaaagaatt taaaaaatct acaaaataat gccacacata caccacccac agtttcttca 7201 agtagcaata gcaacagcaa tagtgccgcc gtgacataca aaagggtgca acattttctg 7261 aatagttcgg cggccaagtt aaaattggcg gcaaatcgca agaggcgtca ttcggcttcg 7321 caaaatttct atcatcatca aaaccagcag caagtgcagt cgcagcaaga gcaaaatttt 7381 cagtttggcc acagcaatag caacaataac aacaataaca acaacagcag cagtgccagt 7441 cacaattcta atcaaatcag cagcaataac aacaacaata atgtcaacat aaccgattta 7501 aatcgctaca aaaagacaaa cgaagaggag ctagcactat ctcttgagcc caagcaaaca 7561 attatcacct gcaaatattg gaccaccact acgaatggca cccaggcctc catggattcc 7621 gctgcggcag ccatgatgct tttggctgcc gctgcaaaca aatccaacgt tggcggcggc 7681 agcggcggag gcattatggc aaccaccaac accacaacga ccacctcaaa cacttacgaa 7741 gatactaacg atgaaggcat catgttggag gataatacat ttggtaatac cttttcttgt 7801 cttatcgata aaaatgcttc tatactgaaa catgtaatga tgacacgacc cctaacacgc 7861 taaacaataa tacaaaaaaa aaaatgcaaa tgtaaatgca aaccatattc tgaaactccc 7921 aaagtcccca aaagagaaac aaaagctaca aacttaagcg gcctatggaa agagaaatag 7981 aaaaaaagag agagaggggg cagccaaact cagaatccaa tatgatgcca taagccaagc 8041 ccttaaattg gcatgttgta gggaggtcaa tttttgagca aagaatccaa atccaaatca 8101 tgttttatat tcctactaaa actttctact ataagagccc cctctctaca atagccgctt 8161 gttataaact cttaaaaaat tttaaaaaat tcaaaaaagc caaaaaaata acaattgtgg 8221 agtacaatgt acttgtgaac aatgtaaaaa tccccacccc gccctcagcg ccccagctcc 8281 cttcaaaatc aacatagaaa aacagaaaat tttacttcaa atgttcagct cataaatatt 8341 tttctaaaaa aaagctacaa aaaaaacaat actttaggtt tttcataaca ctctcttaca 8401 agcatccccc tccccacaca aacatgtata ttgaaacttt tctaatctgt tttgtttttc 8461 tttttttttg tttaatgtta taaattttct ctgtataaaa aaattcacag taaatagtaa 8521 ctttttcttt tttgttgttc taaagaagaa atatttactc ttttttatct cttacaacat 8581 acccatatac atatacctac tattattatt tgatgtacca tacatatact attattatat 8641 gcggcttatt ttcttgtaat ttcgtaattt ataacagatt tataaaattt gttttctcta 8701 ttttccccct cctccaaaaa ccactctatt gtcccttgaa aagaaaaaaa aactcaaaaa 8761 aaaaacatgt taggttgaaa aaaatttttt ttttaaataa tttttgttgt taagataact 8821 gaaatggaaa ttttgcaaag aaaaactaaa tgttttgttc acaattttca caacaataaa 8881 agaaaaggaa acaaacaaaa gcaaaataaa aaatatcatg tgtaaagttt gaaatttttt 8941 gaaaaaaacg gaaccccccc aaaaaaagca atttcaccta aacacactca cacctacaca 9001 acagcaaaac tcaaacaaag aaaacatcat catcctgaag taaaataaag gattaataaa 9061 aaaaaaatca taaaaaaatc aaaattaaa