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LOCUS XM_013247743 7023 bp mRNA linear INV 02-SEP-2023 (LOC106084202), transcript variant X4, mRNA. ACCESSION XM_013247743 VERSION XM_013247743.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013247743.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7023 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..7023 /gene="LOC106084202" /note="homeotic protein female sterile; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins" /db_xref="GeneID:106084202" CDS 1655..6937 /gene="LOC106084202" /codon_start=1 /product="homeotic protein female sterile isoform X4" /protein_id="XP_013103197.2" /db_xref="GeneID:106084202" /translation="MSQEPPPRNEPYVEPVNGVVQPPTVPPPDRPGRNTNQLQYLIKT VMKAIWKHHFSWPFQQPVDAKKLNLPDYHKIIKQPMDLGTVKKRLENNYYWSAKEAIQ DFNTMFSNCYVYNKPGEDVVVMAQALEKVFLQKLEGMAKEEIELEPVTPRGGGKKKPR PPSAKPTAANASLLGAPVTPASAATRTPSAASTRPLSAMGGTVSSSGGTPGSTPGIPP IATVPPQTVPGSTNTTTTALAAGAPSTLLSGANILPASGVAAHVSLVGSAVGAATGAV AGSLAVNSIDGGIAAVGANPSALTNTAAAVPAYHVNSTAGVEAVIPPQQPAKMKKGVK RKADTTTPTANAFESPYAQIDSKSAKIATRRESNRQDAGYPMSPIGVGGAAGVAGGAV GVPGSAKSKEKLSDALKSCNEILKELFSKKHSGYAWPFYKPVDAELLGLHDYHDIIKK PMDLGTVKGKMDNREYKSAPEFAADVRLIFTNCYKYNPPDHDVVAMGRKLQDVFEMRY ANIPDEPVANAHAAAVAAAAAHHGYGKHDASDSSSDESSDSENESNSDEERNAKLKML ETKLLDLQEEMRKLMEEASNKKKAKKKMKEKKKAAASGAIGAGGMVPATGAGAIAPGG AGAATGVTGAIHGHDIASGITMGQIASGGKGANMTPSLAGQAAATTGKGAKSKGQRGP KATNASGAGSANAGGATGGATKRTKGSAASAASGGAGSGTGTRGPNKKKPSTQALVFD SEEEDTAKPMSYDEKRQLSLDINKLPGDKLGRVVHIIQNREPSLRDSNPDEIEIDFET LKPSTLRELESYVASCLRKKTHKKPSGKSKDEQMAEKKQELEKRLQDVTDQIGTNKKP AKKDESSNKVEAVQPANRPSSSSSSSDSSSSSSSDSSSSDSSDSEAGETEGPPKKKKS RDSNSSNVNNTISTTPTSASGSGVAVAAGGVTATSAAASTGTAATTAQSLTVPSAATT VCAAVATPSNLGTQTSLSSGSGQQTNVTAPLGGTAGGTLGGGGGGSMVASANPPAVTT QQQHITGMMGVTTSTSGIAAVAAANNGNTLAAAAAINNNNINPLKTPSVTPTSAATPS VVPTTGAISTLGLFSSVSSGVGSAGSVVGGANGGSTNGPSDLTMPPTSAVGVNTATAA TALTTVLSGGAAAVTVASTAGGASAITNTSSSTGSSGGSGGGIRIASNLHKLPTDVAD TPASVGGAAATSSQINSAASLATGLKQIPQFDDPVEQSLASLEQPSLLAPPPTSKSAA DNFLMAAAGINAAHLMQQQSTPQQQQQVFGSGQQQAQSNQGHGGGSNQHHVEFMNELL SKGAAAAAAENVPGMNGNHFPLMQFGLMEGLNMMQQQFQQAVQHHNNGYNMSDVAAPN ALDTLGLGLGLSHGGGAGAPSLFDQLPGRNDNHLLAMMMSGGAAGMPSNLSLGGPTVG SAIQGVSGKKDTNSTSSNGDQAQQHSSKLLITPKPIESMMPSPPDKKGQHSHASQQAM VGGVVAPPLQSPSELKIPSTTAAGAAGNQAIFAQAFKTHEPNVKNPSSWSILAGSPQN TPTSNKAKPAMDSFQQFRNKAKEKADRQKQLEAAEKEKEQKRQKEAAEKEQQRKQHPK PPSHLVGSSSNSSNSGNGNGSAVGNSLATTLTGSHHQSVVASGGVQPPHAHGGSVSAA HLASSIMDVTESGRKSVHDVQSLSRVVDDIKASPQGCGSPAGTAQQSPQDRAAAKRAE LRRMEQERRRREARAGQIDMNMQSDLMAAFEETL" polyA_site 7023 /gene="LOC106084202" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttttagtaca aacacgtagt tgtgaatcat gtatgctctc tgtcactctt atgtcatatt 61 gttcgtgtta gagtgcgacg actcgtgaca gacgttcgtt gttactcgtg agtcacaaat 121 gtatatttgg tggaaacccg cgttcttacg gtcggatgcg cgtactagtg cagaaaattt 181 attaaaaaca gtatataaaa tcaatgagat aaatttaaaa tagtaaaaaa acataattca 241 atgtatgctt tagcggtatt aagtgaaatt ttgtgaatgc atttgaattt aatggcttaa 301 aattgtgaat gaaaaaagtg agactccaca gggcaacagc agcagcgtat acagagaaac 361 tacccgaaca acaaggagaa agaaacaaga aacacgacga cgaacggtgt gtctgaaaaa 421 aaatttcact attcaatctc gcgtgtatat gcgaattgat gaaatataaa attgatatag 481 cgtgtgtgtg tatttgtttc cgtgtttatg acaagaagga gcgtcaaatc gtgggttaaa 541 gacgaaattt tctcgattgt tgttgcccgg gagtcggttc gaaatgtaaa aagctataag 601 taataaatgt aatgttttag atttccatcg atcacagaac aaatcgcaac atatatctca 661 tcgttattaa agtttataga aatttctaaa aagaaaaaat acacatatat aggaatatgc 721 ccttatattg gacaaaactt ttgccaatgt ttaagtatta atgtactcca ctcagcgaca 781 taggataaca cctaaataaa aactataaat atatagtgga taatgaattt acatttaaat 841 gtataaatat tagctattcg ttttaatact gacgtctcct gcaatcgaag gcttctgcac 901 aaccaactac taatagggaa aatcgacagg gaaacctaca acatagctta ctgattattc 961 cgaagaaggg cgttcttgtt aaccgttttt gaagaggcaa ccaacaagtt gaatatccaa 1021 aaaatcaaat caaacacgag cataatgata accattttaa gttgatttcc ccttcaattg 1081 ctgtacatgt gtgttaattt agccgtaaaa tgcagccacc aaagacagga gaatcaaagc 1141 acgtacagca gcagcagcag tatatggcaa caaacgtatt aagtacggat atgtactgca 1201 taatatacaa attgctctat caaaagaatt ttggacagca gcaaaggatt tgaaaacacg 1261 aaaccgttta aaaattccca acataactta acacaaccaa cggcaattat attagtaaaa 1321 tttcgaaaag cactcgtcta taccaacgat tggaatatta ggggaagaaa ttggcgtgcg 1381 gagttgaacg aaagaggagt gaggtataag gtgaaagtaa tttgaccaat tttgacggag 1441 ccgaagaaag gtcgaacgcg gtatacactc ggcaactatt cttttggcaa acaagccgaa 1501 gtgaaatcgc taaaaagctc cataagctac tgaccagaag cacaaatttg taatacattt 1561 tgtatataaa atacaaatcg aagtaaaata cagcggaaga attgtcttga taaagcgcaa 1621 ggaggaggaa aactcagatt aaaatttaag caaaatgtca caagaaccac cgccccgcaa 1681 tgaaccgtat gtggaaccag tcaatggcgt tgtgcagcca ccaacggtgc cgccaccaga 1741 tcggcctgga cgtaacacaa atcaactaca gtatctcata aagacggtga tgaaggccat 1801 ttggaagcat catttctcgt ggccgtttca acaacccgtc gacgccaaaa aactcaacct 1861 gcccgattat cataagatca taaagcaacc aatggatttg ggaacggtaa agaagcggct 1921 agagaacaat tactactggt cggccaagga agctatacag gatttcaaca caatgttctc 1981 taattgttat gtgtacaata agccaggcga agatgttgtt gtaatggcgc aggcattaga 2041 aaaggtattt ctgcaaaaac tagaaggcat ggcaaaggaa gaaatagaat tggaaccggt 2101 aacgcccaga ggcggtggga aaaagaagcc tcgtccaccg tcggcaaaac caaccgctgc 2161 aaatgcatca ctactcggag ctcctgtgac gcccgctagt gcagcaacta gaacgccaag 2221 cgcggccagc actcggccgt tatctgccat gggtggtacg gtatcatcat cgggcggaac 2281 tccaggatct acgccgggta tacctcctat agcgactgtg ccaccacaaa cagtaccggg 2341 tagtacgaac acaactacta cagctttagc agcaggtgct ccaagtacct tattgtccgg 2401 agcaaacata cttccagcca gtggcgtagc tgcccatgta tccttggtgg gctcagcagt 2461 tggagcagcg acaggtgctg tggcaggttc tctcgctgtt aattccattg atggtggtat 2521 agccgctgtt ggagcgaatc catcagcgtt aaccaatact gccgcggccg tacctgcgta 2581 tcatgttaat agtacagcag gcgttgaagc tgtcataccc ccacaacaac cagccaaaat 2641 gaagaaagga gtgaaaagaa aggctgacac tacaacacca accgcaaatg catttgaatc 2701 accctatgca caaatcgact ccaaaagtgc aaaaatagca acgaggcgtg agtccaatcg 2761 gcaggacgct ggttatccta tgtcacctat aggtgttggt ggggctgctg gtgtagctgg 2821 gggcgccgtg ggtgttccgg gttcagcgaa gtcaaaggaa aaactttcag atgccttgaa 2881 gtcctgcaac gagatcctta aagaactctt ttcgaagaaa cattcaggtt atgcatggcc 2941 tttttacaag ccagtcgacg cagagttact agggctgcat gattatcacg acatcataaa 3001 gaaaccaatg gatttgggaa ctgtcaaagg caaaatggac aatcgcgagt acaaaagtgc 3061 acccgaattt gccgctgacg tgcgattaat attcacaaac tgttacaaat acaatccccc 3121 agatcatgat gttgttgcaa tgggtcgcaa acttcaagat gtcttcgaaa tgcgttacgc 3181 caacataccc gatgaacctg tggcaaatgc tcatgcggca gccgtggcag cagcggctgc 3241 tcatcacggc tacggcaagc atgatgcatc cgattcatcg tccgacgaat catcggacag 3301 tgagaatgaa tcaaattctg atgaggagcg caatgccaag ctcaaaatgt tggagacaaa 3361 actactggat ttgcaagagg aaatgcgaaa gctaatggaa gaagcctcga ataaaaagaa 3421 ggccaaaaag aaaatgaaag agaagaagaa ggccgcagct agtggagcta taggtgccgg 3481 tggaatggtg ccggctacag gtgctggagc aatagcacct ggcggtgccg gcgccgccac 3541 aggtgttaca ggcgccatac atggtcacga tatcgcctct ggcataacaa tgggtcaaat 3601 tgctagtggg ggcaagggcg ctaacatgac tccaagttta gcgggacaag ctgcggcgac 3661 gactggtaaa ggtgctaaaa gtaaaggaca acgtggcccg aaagctacaa atgcaagcgg 3721 cgctggctct gcaaatgcag gtggtgcgac tggaggagct acgaaacgta ccaaaggaag 3781 tgccgcatct gctgctagtg gaggtgctgg ttctggaacg ggaaccagag gacccaacaa 3841 aaagaaaccc agcactcagg ctctggtatt cgattctgag gaagaagata ccgccaaacc 3901 aatgtcatat gacgaaaaga ggcaactgtc gttggacatc aataaactgc cgggtgataa 3961 actaggacgc gttgtgcaca tcatacagaa ccgcgaacca tcgctgcgcg actcgaatcc 4021 ggatgagata gaaattgact ttgagactct aaaaccttca acgctgcgag aactcgagag 4081 ctatgtcgcg tcttgtctac gcaaaaaaac ccataaaaaa ccctctggca aatctaagga 4141 tgagcaaatg gccgaaaaga aacaggaatt ggagaaacgt ttgcaagatg ttacggatca 4201 aataggtacc aacaagaaac cagccaaaaa agacgaatca tcgaataaag ttgaagctgt 4261 tcaacccgca aatcgccctt catcaagctc aagttcgagc gactcatcct cgtccagttc 4321 aagcgacagt agttctagcg attcaagtga cagtgaagca ggcgaaactg aaggtccacc 4381 aaaaaagaag aaatcccgcg attcaaatag cagtaacgta aataatacta tatcaacaac 4441 gccaaccagt gcgagtggca gtggtgttgc tgtggcggcg ggtggagtaa cagcaacgtc 4501 agctgcggca tcaacgggaa cggcagcaac aacggcacaa tctctaacag taccatcggc 4561 agcaacaact gtatgtgctg ctgtagccac gccatcgaac ttaggcacac aaacttcatt 4621 atcgagcgga agtggccaac agacgaatgt cactgcacca ttgggcggga cagcaggagg 4681 gacactaggc ggcggcggcg gtggttcaat ggtggcttct gcaaacccgc cagcagttac 4741 aacgcagcag cagcatataa ctggaatgat gggggtgaca acatcaacat cgggaattgc 4801 agcagtagca gcagctaaca acggcaatac cttggctgca gcagcggcaa taaataataa 4861 caatatcaat cctcttaaaa caccttcagt cacgcctaca tcagcagcaa ctccatccgt 4921 cgttccaaca acaggagcaa tatctacgct cggtctattc agtagtgtaa gttctggtgt 4981 tggaagtgcc ggaagtgttg ttggtggggc taatggtggc agcactaatg gaccaagtga 5041 cttgacaatg ccaccgactt ctgctgtagg tgtgaacact gcgacagctg caaccgctct 5101 aacgactgtt ctaagtggtg gtgctgctgc agttaccgtg gccagtaccg ctggtggcgc 5161 tagcgctatt acaaacacaa gcagcagtac gggtagcagt ggcggcagcg gcggaggaat 5221 acgcattgct agtaatctac acaaactacc tacagatgtg gctgatacac cagcaagtgt 5281 tggtggcgct gcagctactt cgtcgcagat aaactctgcg gcgtcattgg caacaggcct 5341 taaacaaatt cctcaattcg atgaccccgt tgaacagtcg cttgcttcat tggagcaacc 5401 atcactattg gcaccaccgc caaccagcaa aagtgctgct gataactttc ttatggcggc 5461 tgcgggtatt aatgcggctc atttaatgca acagcaatct acaccgcagc aacagcaaca 5521 agtctttgga agcggccaac aacaggcgca atccaaccaa ggtcatggag gaggcagcaa 5581 tcaacatcat gtagaattta tgaacgaatt gttgtcgaaa ggcgctgctg cggcagctgc 5641 ggaaaatgtt cctggtatga atggcaatca ttttcctctg atgcaatttg gtctaatgga 5701 ggggctgaat atgatgcaac aacaattcca acaagccgta cagcatcaca ataacggtta 5761 caatatgtcc gatgttgcgg cgcccaacgc cctggatact cttggcttgg gcttgggtct 5821 atcgcatggc ggcggcgccg gggcaccctc cctattcgac caattgcccg gaagaaacga 5881 taatcatttg ctggccatga tgatgagtgg cggagcagct ggaatgccta gcaacttgtc 5941 tctagggggt cctaccgttg gatcggcgat acaaggagtg agcggtaaaa aggacactaa 6001 ttcgaccagc agcaatggtg atcaggcaca acaacactca agcaaattgc ttataactcc 6061 caaacccatc gaatctatga tgcctagtcc accagataaa aaaggccaac attcacatgc 6121 atcgcagcag gcaatggttg gcggggtggt agcaccacct ctacaatcgc catcggaatt 6181 aaaaataccc tcaacaacgg cagccggggc agctggtaat caagctattt tcgcccaagc 6241 attcaaaact cacgaaccaa atgttaaaaa tcccagttcg tggtcaatac ttgcgggatc 6301 gccccaaaac acccccactt cgaacaaagc caaacctgcc atggactcat tccaacaatt 6361 ccgcaacaaa gccaaagaaa aggccgaccg ccaaaagcaa ctggaggccg ctgaaaagga 6421 gaaagaacag aaacgtcaga aagaagccgc cgaaaaggag cagcaacgaa agcaacatcc 6481 caaacctccg tcccatctgg taggttcaag ttctaactcc agcaatagtg gcaacggcaa 6541 tggaagcgct gttggcaata gtttggctac aactctcacc ggatcgcatc accaatcagt 6601 tgttgcctct ggaggagtac agccacccca cgcccatggt ggtagtgtga gtgcagctca 6661 tttagcttca tcaataatgg atgttacgga aagtggcagg aaaagtgtgc acgatgttca 6721 gtcattatcc cgcgttgttg atgacatcaa agcttcccca caaggttgtg gctccccagc 6781 tggcacggcc caacaatcgc cacaagatcg ggctgccgcc aaacgtgccg agttgagacg 6841 gatggaacaa gagcgccgaa gacgagaagc gagagctgga caaatcgaca tgaatatgca 6901 aagtgattta atggcagcgt tcgaagagac gctttaatat atggctaaat aacttccacg 6961 tgggaaactg ttaaaatata tctcctcttt gttgtcataa taaatattgg attttctaat 7021 tga