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LOCUS XM_013247742 7034 bp mRNA linear INV 02-SEP-2023 (LOC106084202), transcript variant X2, mRNA. ACCESSION XM_013247742 VERSION XM_013247742.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013247742.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7034 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..7034 /gene="LOC106084202" /note="homeotic protein female sterile; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:106084202" CDS 1654..6948 /gene="LOC106084202" /codon_start=1 /product="homeotic protein female sterile isoform X2" /protein_id="XP_013103196.2" /db_xref="GeneID:106084202" /translation="MSQEPPPRNEPYVEPVNGVVQPPTVPPPDRPGRNTNQLQYLIKT VMKAIWKHHFSWPFQQPVDAKKLNLPDYHKIIKQPMDLGTVKKRLENNYYWSAKEAIQ DFNTMFSNCYVYNKPGEDVVVMAQALEKVFLQKLEGMAKEEIELEPVTPRGGGKKKPR PPSAKPTAANASLLGAPVTPASAATRTPSAASTRPLSAMGGTVSSSGGTPGSTPGIPP IATVPPQTVPGSTNTTTTALAAGAPSTLLSGANILPASGVAAHVSLVGSAVGAATGAV AGSLAVNSIDGGIAAVGANPSALTNTAAAVPAYHVNSTAGVEAVIPPQQPAKMKKGVK RKADTTTPTANAFESPYAQIDSKSAKIATRRESNRQVGKKDAGYPMSPIGVGGAAGVA GGAVGVPGSAKSKEKLSDALKSCNEILKELFSKKHSGYAWPFYKPVDAELLGLHDYHD IIKKPMDLGTVKGKMDNREYKSAPEFAADVRLIFTNCYKYNPPDHDVVAMGRKLQDVF EMRYANIPDEPVANAHAAAVAAAAAHHGYGKHDASDSSSDESSDSENESNSDEERNAK LKMLETKLLDLQEEMRKLMEEASNKKKAKKKMKEKKKAAASGAIGAGGMVPATGAGAI APGGAGAATGVTGAIHGHDIASGITMGQIASGGKGANMTPSLAGQAAATTGKGAKSKG QRGPKATNASGAGSANAGGATGGATKRTKGSAASAASGGAGSGTGTRGPNKKKPSTQA LVFDSEEEDTAKPMSYDEKRQLSLDINKLPGDKLGRVVHIIQNREPSLRDSNPDEIEI DFETLKPSTLRELESYVASCLRKKTHKKPSGKSKDEQMAEKKQELEKRLQDVTDQIGT NKKPAKKDESSNKVEAVQPANRPSSSSSSSDSSSSSSSDSSSSDSSDSEAGETEGPPK KKKSRDSNSSNVNNTISTTPTSASGSGVAVAAGGVTATSAAASTGTAATTAQSLTVPS AATTVCAAVATPSNLGTQTSLSSGSGQQTNVTAPLGGTAGGTLGGGGGGSMVASANPP AVTTQQQHITGMMGVTTSTSGIAAVAAANNGNTLAAAAAINNNNINPLKTPSVTPTSA ATPSVVPTTGAISTLGLFSSVSSGVGSAGSVVGGANGGSTNGPSDLTMPPTSAVGVNT ATAATALTTVLSGGAAAVTVASTAGGASAITNTSSSTGSSGGSGGGIRIASNLHKLPT DVADTPASVGGAAATSSQINSAASLATGLKQIPQFDDPVEQSLASLEQPSLLAPPPTS KSAADNFLMAAAGINAAHLMQQQSTPQQQQQVFGSGQQQAQSNQGHGGGSNQHHVEFM NELLSKGAAAAAAENVPGMNGNHFPLMQFGLMEGLNMMQQQFQQAVQHHNNGYNMSDV AAPNALDTLGLGLGLSHGGGAGAPSLFDQLPGRNDNHLLAMMMSGGAAGMPSNLSLGG PTVGSAIQGVSGKKDTNSTSSNGDQAQQHSSKLLITPKPIESMMPSPPDKKGQHSHAS QQAMVGGVVAPPLQSPSELKIPSTTAAGAAGNQAIFAQAFKTHEPNVKNPSSWSILAG SPQNTPTSNKAKPAMDSFQQFRNKAKEKADRQKQLEAAEKEKEQKRQKEAAEKEQQRK QHPKPPSHLVGSSSNSSNSGNGNGSAVGNSLATTLTGSHHQSVVASGGVQPPHAHGGS VSAAHLASSIMDVTESGRKSVHDVQSLSRVVDDIKASPQGCGSPAGTAQQSPQDRAAA KRAELRRMEQERRRREARAGQIDMNMQSDLMAAFEETL" polyA_site 7034 /gene="LOC106084202" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tttagtacaa acacgtagtt gtgaatcatg tatgctctct gtcactctta tgtcatattg 61 ttcgtgttag agtgcgacga ctcgtgacag acgttcgttg ttactcgtga gtcacaaatg 121 tatatttggt ggaaacccgc gttcttacgg tcggatgcgc gtactagtgc agaaaattta 181 ttaaaaacag tatataaaat caatgagata aatttaaaat agtaaaaaaa cataattcaa 241 tgtatgcttt agcggtatta agtgaaattt tgtgaatgca tttgaattta atggcttaaa 301 attgtgaatg aaaaaagtga gactccacag ggcaacagca gcagcgtata cagagaaact 361 acccgaacaa caaggagaaa gaaacaagaa acacgacgac gaacggtgtg tctgaaaaaa 421 aatttcacta ttcaatctcg cgtgtatatg cgaattgatg aaatataaaa ttgatatagc 481 gtgtgtgtgt atttgtttcc gtgtttatga caagaaggag cgtcaaatcg tgggttaaag 541 acgaaatttt ctcgattgtt gttgcccggg agtcggttcg aaatgtaaaa agctataagt 601 aataaatgta atgttttaga tttccatcga tcacagaaca aatcgcaaca tatatctcat 661 cgttattaaa gtttatagaa atttctaaaa agaaaaaata cacatatata ggaatatgcc 721 cttatattgg acaaaacttt tgccaatgtt taagtattaa tgtactccac tcagcgacat 781 aggataacac ctaaataaaa actataaata tatagtggat aatgaattta catttaaatg 841 tataaatatt agctattcgt tttaatactg acgtctcctg caatcgaagg cttctgcaca 901 accaactact aatagggaaa atcgacaggg aaacctacaa catagcttac tgattattcc 961 gaagaagggc gttcttgtta accgtttttg aagaggcaac caacaagttg aatatccaaa 1021 aaatcaaatc aaacacgagc ataatgataa ccattttaag ttgatttccc cttcaattgc 1081 tgtacatgtg tgttaattta gccgtaaaat gcagccacca aagacaggag aatcaaagca 1141 cgtacagcag cagcagcagt atatggcaac aaacgtatta agtacggata tgtactgcat 1201 aatatacaaa ttgctctatc aaaagaattt tggacagcag caaaggattt gaaaacacga 1261 aaccgtttaa aaattcccaa cataacttaa cacaaccaac ggcaattata ttagtaaaat 1321 ttcgaaaagc actcgtctat accaacgatt ggaatattag gggaagaaat tggcgtgcgg 1381 agttgaacga aagaggagtg aggtataagg tgaaagtaat ttgaccaatt ttgacggagc 1441 cgaagaaagg tcgaacgcgg tatacactcg gcaactattc ttttggcaaa caagccgaag 1501 tgaaatcgct aaaaagctcc ataagctact gaccagaagc acaaatttgt aatacatttt 1561 gtatataaaa tacaaatcga agtaaaatac agcggaagaa ttgtcttgat aaagcgcaag 1621 gaggaggaaa actcagatta aaatttaagc aaaatgtcac aagaaccacc gccccgcaat 1681 gaaccgtatg tggaaccagt caatggcgtt gtgcagccac caacggtgcc gccaccagat 1741 cggcctggac gtaacacaaa tcaactacag tatctcataa agacggtgat gaaggccatt 1801 tggaagcatc atttctcgtg gccgtttcaa caacccgtcg acgccaaaaa actcaacctg 1861 cccgattatc ataagatcat aaagcaacca atggatttgg gaacggtaaa gaagcggcta 1921 gagaacaatt actactggtc ggccaaggaa gctatacagg atttcaacac aatgttctct 1981 aattgttatg tgtacaataa gccaggcgaa gatgttgttg taatggcgca ggcattagaa 2041 aaggtatttc tgcaaaaact agaaggcatg gcaaaggaag aaatagaatt ggaaccggta 2101 acgcccagag gcggtgggaa aaagaagcct cgtccaccgt cggcaaaacc aaccgctgca 2161 aatgcatcac tactcggagc tcctgtgacg cccgctagtg cagcaactag aacgccaagc 2221 gcggccagca ctcggccgtt atctgccatg ggtggtacgg tatcatcatc gggcggaact 2281 ccaggatcta cgccgggtat acctcctata gcgactgtgc caccacaaac agtaccgggt 2341 agtacgaaca caactactac agctttagca gcaggtgctc caagtacctt attgtccgga 2401 gcaaacatac ttccagccag tggcgtagct gcccatgtat ccttggtggg ctcagcagtt 2461 ggagcagcga caggtgctgt ggcaggttct ctcgctgtta attccattga tggtggtata 2521 gccgctgttg gagcgaatcc atcagcgtta accaatactg ccgcggccgt acctgcgtat 2581 catgttaata gtacagcagg cgttgaagct gtcatacccc cacaacaacc agccaaaatg 2641 aagaaaggag tgaaaagaaa ggctgacact acaacaccaa ccgcaaatgc atttgaatca 2701 ccctatgcac aaatcgactc caaaagtgca aaaatagcaa cgaggcgtga gtccaatcgg 2761 caggtaggca aaaaggacgc tggttatcct atgtcaccta taggtgttgg tggggctgct 2821 ggtgtagctg ggggcgccgt gggtgttccg ggttcagcga agtcaaagga aaaactttca 2881 gatgccttga agtcctgcaa cgagatcctt aaagaactct tttcgaagaa acattcaggt 2941 tatgcatggc ctttttacaa gccagtcgac gcagagttac tagggctgca tgattatcac 3001 gacatcataa agaaaccaat ggatttggga actgtcaaag gcaaaatgga caatcgcgag 3061 tacaaaagtg cacccgaatt tgccgctgac gtgcgattaa tattcacaaa ctgttacaaa 3121 tacaatcccc cagatcatga tgttgttgca atgggtcgca aacttcaaga tgtcttcgaa 3181 atgcgttacg ccaacatacc cgatgaacct gtggcaaatg ctcatgcggc agccgtggca 3241 gcagcggctg ctcatcacgg ctacggcaag catgatgcat ccgattcatc gtccgacgaa 3301 tcatcggaca gtgagaatga atcaaattct gatgaggagc gcaatgccaa gctcaaaatg 3361 ttggagacaa aactactgga tttgcaagag gaaatgcgaa agctaatgga agaagcctcg 3421 aataaaaaga aggccaaaaa gaaaatgaaa gagaagaaga aggccgcagc tagtggagct 3481 ataggtgccg gtggaatggt gccggctaca ggtgctggag caatagcacc tggcggtgcc 3541 ggcgccgcca caggtgttac aggcgccata catggtcacg atatcgcctc tggcataaca 3601 atgggtcaaa ttgctagtgg gggcaagggc gctaacatga ctccaagttt agcgggacaa 3661 gctgcggcga cgactggtaa aggtgctaaa agtaaaggac aacgtggccc gaaagctaca 3721 aatgcaagcg gcgctggctc tgcaaatgca ggtggtgcga ctggaggagc tacgaaacgt 3781 accaaaggaa gtgccgcatc tgctgctagt ggaggtgctg gttctggaac gggaaccaga 3841 ggacccaaca aaaagaaacc cagcactcag gctctggtat tcgattctga ggaagaagat 3901 accgccaaac caatgtcata tgacgaaaag aggcaactgt cgttggacat caataaactg 3961 ccgggtgata aactaggacg cgttgtgcac atcatacaga accgcgaacc atcgctgcgc 4021 gactcgaatc cggatgagat agaaattgac tttgagactc taaaaccttc aacgctgcga 4081 gaactcgaga gctatgtcgc gtcttgtcta cgcaaaaaaa cccataaaaa accctctggc 4141 aaatctaagg atgagcaaat ggccgaaaag aaacaggaat tggagaaacg tttgcaagat 4201 gttacggatc aaataggtac caacaagaaa ccagccaaaa aagacgaatc atcgaataaa 4261 gttgaagctg ttcaacccgc aaatcgccct tcatcaagct caagttcgag cgactcatcc 4321 tcgtccagtt caagcgacag tagttctagc gattcaagtg acagtgaagc aggcgaaact 4381 gaaggtccac caaaaaagaa gaaatcccgc gattcaaata gcagtaacgt aaataatact 4441 atatcaacaa cgccaaccag tgcgagtggc agtggtgttg ctgtggcggc gggtggagta 4501 acagcaacgt cagctgcggc atcaacggga acggcagcaa caacggcaca atctctaaca 4561 gtaccatcgg cagcaacaac tgtatgtgct gctgtagcca cgccatcgaa cttaggcaca 4621 caaacttcat tatcgagcgg aagtggccaa cagacgaatg tcactgcacc attgggcggg 4681 acagcaggag ggacactagg cggcggcggc ggtggttcaa tggtggcttc tgcaaacccg 4741 ccagcagtta caacgcagca gcagcatata actggaatga tgggggtgac aacatcaaca 4801 tcgggaattg cagcagtagc agcagctaac aacggcaata ccttggctgc agcagcggca 4861 ataaataata acaatatcaa tcctcttaaa acaccttcag tcacgcctac atcagcagca 4921 actccatccg tcgttccaac aacaggagca atatctacgc tcggtctatt cagtagtgta 4981 agttctggtg ttggaagtgc cggaagtgtt gttggtgggg ctaatggtgg cagcactaat 5041 ggaccaagtg acttgacaat gccaccgact tctgctgtag gtgtgaacac tgcgacagct 5101 gcaaccgctc taacgactgt tctaagtggt ggtgctgctg cagttaccgt ggccagtacc 5161 gctggtggcg ctagcgctat tacaaacaca agcagcagta cgggtagcag tggcggcagc 5221 ggcggaggaa tacgcattgc tagtaatcta cacaaactac ctacagatgt ggctgataca 5281 ccagcaagtg ttggtggcgc tgcagctact tcgtcgcaga taaactctgc ggcgtcattg 5341 gcaacaggcc ttaaacaaat tcctcaattc gatgaccccg ttgaacagtc gcttgcttca 5401 ttggagcaac catcactatt ggcaccaccg ccaaccagca aaagtgctgc tgataacttt 5461 cttatggcgg ctgcgggtat taatgcggct catttaatgc aacagcaatc tacaccgcag 5521 caacagcaac aagtctttgg aagcggccaa caacaggcgc aatccaacca aggtcatgga 5581 ggaggcagca atcaacatca tgtagaattt atgaacgaat tgttgtcgaa aggcgctgct 5641 gcggcagctg cggaaaatgt tcctggtatg aatggcaatc attttcctct gatgcaattt 5701 ggtctaatgg aggggctgaa tatgatgcaa caacaattcc aacaagccgt acagcatcac 5761 aataacggtt acaatatgtc cgatgttgcg gcgcccaacg ccctggatac tcttggcttg 5821 ggcttgggtc tatcgcatgg cggcggcgcc ggggcaccct ccctattcga ccaattgccc 5881 ggaagaaacg ataatcattt gctggccatg atgatgagtg gcggagcagc tggaatgcct 5941 agcaacttgt ctctaggggg tcctaccgtt ggatcggcga tacaaggagt gagcggtaaa 6001 aaggacacta attcgaccag cagcaatggt gatcaggcac aacaacactc aagcaaattg 6061 cttataactc ccaaacccat cgaatctatg atgcctagtc caccagataa aaaaggccaa 6121 cattcacatg catcgcagca ggcaatggtt ggcggggtgg tagcaccacc tctacaatcg 6181 ccatcggaat taaaaatacc ctcaacaacg gcagccgggg cagctggtaa tcaagctatt 6241 ttcgcccaag cattcaaaac tcacgaacca aatgttaaaa atcccagttc gtggtcaata 6301 cttgcgggat cgccccaaaa cacccccact tcgaacaaag ccaaacctgc catggactca 6361 ttccaacaat tccgcaacaa agccaaagaa aaggccgacc gccaaaagca actggaggcc 6421 gctgaaaagg agaaagaaca gaaacgtcag aaagaagccg ccgaaaagga gcagcaacga 6481 aagcaacatc ccaaacctcc gtcccatctg gtaggttcaa gttctaactc cagcaatagt 6541 ggcaacggca atggaagcgc tgttggcaat agtttggcta caactctcac cggatcgcat 6601 caccaatcag ttgttgcctc tggaggagta cagccacccc acgcccatgg tggtagtgtg 6661 agtgcagctc atttagcttc atcaataatg gatgttacgg aaagtggcag gaaaagtgtg 6721 cacgatgttc agtcattatc ccgcgttgtt gatgacatca aagcttcccc acaaggttgt 6781 ggctccccag ctggcacggc ccaacaatcg ccacaagatc gggctgccgc caaacgtgcc 6841 gagttgagac ggatggaaca agagcgccga agacgagaag cgagagctgg acaaatcgac 6901 atgaatatgc aaagtgattt aatggcagcg ttcgaagaga cgctttaata tatggctaaa 6961 taacttccac gtgggaaact gttaaaatat atctcctctt tgttgtcata ataaatattg 7021 gattttctaa ttga