Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_013247740 6668 bp mRNA linear INV 02-SEP-2023 (LOC106084202), transcript variant X1, mRNA. ACCESSION XM_013247740 VERSION XM_013247740.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013247740.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6668 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..6668 /gene="LOC106084202" /note="homeotic protein female sterile; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:106084202" CDS 1276..6582 /gene="LOC106084202" /codon_start=1 /product="homeotic protein female sterile isoform X1" /protein_id="XP_013103194.2" /db_xref="GeneID:106084202" /translation="MSQEPPPRNEPYVEPVNGVVQPPTVPPPDRPGRNTNQLQYLIKT VMKAIWKHHFSWPFQQPVDAKKLNLPDYHKIIKQPMDLGTVKKRLENNYYWSAKEAIQ DFNTMFSNCYVYNKPGEDVVVMAQALEKVFLQKLEGMAKEEIELEPVTPRGGGKKKPR PPSAKPTAANASLLGAPVTPASAATRTPSAASTRPLSAMGGTVSSSGGTPGSTPGIPP IATVPPQTVPGSTNTTTTALAAGAPSTLLSGANILPASGVAAHVSLVGSAVGAATGAV AGSLAVNSIDGGIAAVGANPSALTNTAAAVPAYHVNSTAGVEAVIPPQQPAKMKKGVK RKADTTTPTANAFESPYAQIDSKSAKIATRRESNRQVGKKDAGYPMSPIGVGGAAGVA GGAVGVPGSAKSKEKLSDALKSCNEILKELFSKKHSGYAWPFYKPVDAELLGLHDYHD IIKKPMDLGTVKGKMDNREYKSAPEFAADVRLIFTNCYKYNPPDHDVVAMGRKLQDVF EMRYANIPDEPVANAHAAAVAAAAAHHGYGKHDASDSSSDESSDSENESNSDEERNAK LKMLETKLLDLQEEMRKLMEEASNKKKAKKKMKEKKKAAASGAIGAGGMVPATGAGAI APGGAGAATGVTGAIHGHDIASGITMGQIASGGKGANMTPSLAGQAAATTGKGAKSKG QRGPKATNASGAGSANAGGATGGATKRTKGSAASAASGGAGSGTGTRGPNKKKPSTQA LVFDSEEEDTAKPMSYDEKRQLSLDINKLPGDKLGRVVHIIQNREPSLRDSNPDEIEI DFETLKPSTLRELESYVASCLRKKTRKPYYKKPSGKSKDEQMAEKKQELEKRLQDVTD QIGTNKKPAKKDESSNKVEAVQPANRPSSSSSSSDSSSSSSSDSSSSDSSDSEAGETE GPPKKKKSRDSNSSNVNNTISTTPTSASGSGVAVAAGGVTATSAAASTGTAATTAQSL TVPSAATTVCAAVATPSNLGTQTSLSSGSGQQTNVTAPLGGTAGGTLGGGGGGSMVAS ANPPAVTTQQQHITGMMGVTTSTSGIAAVAAANNGNTLAAAAAINNNNINPLKTPSVT PTSAATPSVVPTTGAISTLGLFSSVSSGVGSAGSVVGGANGGSTNGPSDLTMPPTSAV GVNTATAATALTTVLSGGAAAVTVASTAGGASAITNTSSSTGSSGGSGGGIRIASNLH KLPTDVADTPASVGGAAATSSQINSAASLATGLKQIPQFDDPVEQSLASLEQPSLLAP PPTSKSAADNFLMAAAGINAAHLMQQQSTPQQQQQVFGSGQQQAQSNQGHGGGSNQHH VEFMNELLSKGAAAAAAENVPGMNGNHFPLMQFGLMEGLNMMQQQFQQAVQHHNNGYN MSDVAAPNALDTLGLGLGLSHGGGAGAPSLFDQLPGRNDNHLLAMMMSGGAAGMPSNL SLGGPTVGSAIQGVSGKKDTNSTSSNGDQAQQHSSKLLITPKPIESMMPSPPDKKGQH SHASQQAMVGGVVAPPLQSPSELKIPSTTAAGAAGNQAIFAQAFKTHEPNVKNPSSWS ILAGSPQNTPTSNKAKPAMDSFQQFRNKAKEKADRQKQLEAAEKEKEQKRQKEAAEKE QQRKQHPKPPSHLVGSSSNSSNSGNGNGSAVGNSLATTLTGSHHQSVVASGGVQPPHA HGGSVSAAHLASSIMDVTESGRKSVHDVQSLSRVVDDIKASPQGCGSPAGTAQQSPQD RAAAKRAELRRMEQERRRREARAGQIDMNMQSDLMAAFEETL" polyA_site 6668 /gene="LOC106084202" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tttagtacaa acacgtagtt gtgaatcatg tatgctctct gtcactctta tgtcatattg 61 ttcgtgttag agtgcgacga ctcgtgacag acgttcgttg ttactcgtga gtcacaaatg 121 tatatttggt ggaaacccgc gttcttacgg tcggatgcgc gtactagtgc agaaaattta 181 ttaaaaacag tatataaaat caatgagata aatttaaaat agtaaaaaaa cataattcaa 241 tatttccatc gatcacagaa caaatcgcaa catatatctc atcgttatta aagtttatag 301 aaatttctaa aaagaaaaaa tacacatata taggaatatg cccttatatt ggacaaaact 361 tttgccaatg tttaagtatt aatgtactcc actcagcgac ataggataac acctaaataa 421 aaactataaa tatatagtgg ataatgaatt tacatttaaa tgtataaata ttagctattc 481 gttttaatac tgacgtctcc tgcaatcgaa ggcttctgca caaccaacta ctaataggga 541 aaatcgacag ggaaacctac aacatagctt actgattatt ccgaagaagg gcgttcttgt 601 taaccgtttt tgaagaggca accaacaagt tgaatatcca aaaaatcaaa tcaaacacga 661 gcataatgat aaccatttta agttgatttc cccttcaatt gctgtacatg tgtgttaatt 721 tagccgtaaa atgcagccac caaagacagg agaatcaaag cacgtacagc agcagcagca 781 gtatatggca acaaacgtat taagtacgga tatgtactgc ataatataca aattgctcta 841 tcaaaagaat tttggacagc agcaaaggat ttgaaaacac gaaaccgttt aaaaattccc 901 aacataactt aacacaacca acggcaatta tattagtaaa atttcgaaaa gcactcgtct 961 ataccaacga ttggaatatt aggggaagaa attggcgtgc ggagttgaac gaaagaggag 1021 tgaggtataa ggtgaaagta atttgaccaa ttttgacgga gccgaagaaa ggtcgaacgc 1081 ggtatacact cggcaactat tcttttggca aacaagccga agtgaaatcg ctaaaaagct 1141 ccataagcta ctgaccagaa gcacaaattt gtaatacatt ttgtatataa aatacaaatc 1201 gaagtaaaat acagcggaag aattgtcttg ataaagcgca aggaggagga aaactcagat 1261 taaaatttaa gcaaaatgtc acaagaacca ccgccccgca atgaaccgta tgtggaacca 1321 gtcaatggcg ttgtgcagcc accaacggtg ccgccaccag atcggcctgg acgtaacaca 1381 aatcaactac agtatctcat aaagacggtg atgaaggcca tttggaagca tcatttctcg 1441 tggccgtttc aacaacccgt cgacgccaaa aaactcaacc tgcccgatta tcataagatc 1501 ataaagcaac caatggattt gggaacggta aagaagcggc tagagaacaa ttactactgg 1561 tcggccaagg aagctataca ggatttcaac acaatgttct ctaattgtta tgtgtacaat 1621 aagccaggcg aagatgttgt tgtaatggcg caggcattag aaaaggtatt tctgcaaaaa 1681 ctagaaggca tggcaaagga agaaatagaa ttggaaccgg taacgcccag aggcggtggg 1741 aaaaagaagc ctcgtccacc gtcggcaaaa ccaaccgctg caaatgcatc actactcgga 1801 gctcctgtga cgcccgctag tgcagcaact agaacgccaa gcgcggccag cactcggccg 1861 ttatctgcca tgggtggtac ggtatcatca tcgggcggaa ctccaggatc tacgccgggt 1921 atacctccta tagcgactgt gccaccacaa acagtaccgg gtagtacgaa cacaactact 1981 acagctttag cagcaggtgc tccaagtacc ttattgtccg gagcaaacat acttccagcc 2041 agtggcgtag ctgcccatgt atccttggtg ggctcagcag ttggagcagc gacaggtgct 2101 gtggcaggtt ctctcgctgt taattccatt gatggtggta tagccgctgt tggagcgaat 2161 ccatcagcgt taaccaatac tgccgcggcc gtacctgcgt atcatgttaa tagtacagca 2221 ggcgttgaag ctgtcatacc cccacaacaa ccagccaaaa tgaagaaagg agtgaaaaga 2281 aaggctgaca ctacaacacc aaccgcaaat gcatttgaat caccctatgc acaaatcgac 2341 tccaaaagtg caaaaatagc aacgaggcgt gagtccaatc ggcaggtagg caaaaaggac 2401 gctggttatc ctatgtcacc tataggtgtt ggtggggctg ctggtgtagc tgggggcgcc 2461 gtgggtgttc cgggttcagc gaagtcaaag gaaaaacttt cagatgcctt gaagtcctgc 2521 aacgagatcc ttaaagaact cttttcgaag aaacattcag gttatgcatg gcctttttac 2581 aagccagtcg acgcagagtt actagggctg catgattatc acgacatcat aaagaaacca 2641 atggatttgg gaactgtcaa aggcaaaatg gacaatcgcg agtacaaaag tgcacccgaa 2701 tttgccgctg acgtgcgatt aatattcaca aactgttaca aatacaatcc cccagatcat 2761 gatgttgttg caatgggtcg caaacttcaa gatgtcttcg aaatgcgtta cgccaacata 2821 cccgatgaac ctgtggcaaa tgctcatgcg gcagccgtgg cagcagcggc tgctcatcac 2881 ggctacggca agcatgatgc atccgattca tcgtccgacg aatcatcgga cagtgagaat 2941 gaatcaaatt ctgatgagga gcgcaatgcc aagctcaaaa tgttggagac aaaactactg 3001 gatttgcaag aggaaatgcg aaagctaatg gaagaagcct cgaataaaaa gaaggccaaa 3061 aagaaaatga aagagaagaa gaaggccgca gctagtggag ctataggtgc cggtggaatg 3121 gtgccggcta caggtgctgg agcaatagca cctggcggtg ccggcgccgc cacaggtgtt 3181 acaggcgcca tacatggtca cgatatcgcc tctggcataa caatgggtca aattgctagt 3241 gggggcaagg gcgctaacat gactccaagt ttagcgggac aagctgcggc gacgactggt 3301 aaaggtgcta aaagtaaagg acaacgtggc ccgaaagcta caaatgcaag cggcgctggc 3361 tctgcaaatg caggtggtgc gactggagga gctacgaaac gtaccaaagg aagtgccgca 3421 tctgctgcta gtggaggtgc tggttctgga acgggaacca gaggacccaa caaaaagaaa 3481 cccagcactc aggctctggt attcgattct gaggaagaag ataccgccaa accaatgtca 3541 tatgacgaaa agaggcaact gtcgttggac atcaataaac tgccgggtga taaactagga 3601 cgcgttgtgc acatcataca gaaccgcgaa ccatcgctgc gcgactcgaa tccggatgag 3661 atagaaattg actttgagac tctaaaacct tcaacgctgc gagaactcga gagctatgtc 3721 gcgtcttgtc tacgcaaaaa aacccgtaag ccttactata aaaaaccctc tggcaaatct 3781 aaggatgagc aaatggccga aaagaaacag gaattggaga aacgtttgca agatgttacg 3841 gatcaaatag gtaccaacaa gaaaccagcc aaaaaagacg aatcatcgaa taaagttgaa 3901 gctgttcaac ccgcaaatcg cccttcatca agctcaagtt cgagcgactc atcctcgtcc 3961 agttcaagcg acagtagttc tagcgattca agtgacagtg aagcaggcga aactgaaggt 4021 ccaccaaaaa agaagaaatc ccgcgattca aatagcagta acgtaaataa tactatatca 4081 acaacgccaa ccagtgcgag tggcagtggt gttgctgtgg cggcgggtgg agtaacagca 4141 acgtcagctg cggcatcaac gggaacggca gcaacaacgg cacaatctct aacagtacca 4201 tcggcagcaa caactgtatg tgctgctgta gccacgccat cgaacttagg cacacaaact 4261 tcattatcga gcggaagtgg ccaacagacg aatgtcactg caccattggg cgggacagca 4321 ggagggacac taggcggcgg cggcggtggt tcaatggtgg cttctgcaaa cccgccagca 4381 gttacaacgc agcagcagca tataactgga atgatggggg tgacaacatc aacatcggga 4441 attgcagcag tagcagcagc taacaacggc aataccttgg ctgcagcagc ggcaataaat 4501 aataacaata tcaatcctct taaaacacct tcagtcacgc ctacatcagc agcaactcca 4561 tccgtcgttc caacaacagg agcaatatct acgctcggtc tattcagtag tgtaagttct 4621 ggtgttggaa gtgccggaag tgttgttggt ggggctaatg gtggcagcac taatggacca 4681 agtgacttga caatgccacc gacttctgct gtaggtgtga acactgcgac agctgcaacc 4741 gctctaacga ctgttctaag tggtggtgct gctgcagtta ccgtggccag taccgctggt 4801 ggcgctagcg ctattacaaa cacaagcagc agtacgggta gcagtggcgg cagcggcgga 4861 ggaatacgca ttgctagtaa tctacacaaa ctacctacag atgtggctga tacaccagca 4921 agtgttggtg gcgctgcagc tacttcgtcg cagataaact ctgcggcgtc attggcaaca 4981 ggccttaaac aaattcctca attcgatgac cccgttgaac agtcgcttgc ttcattggag 5041 caaccatcac tattggcacc accgccaacc agcaaaagtg ctgctgataa ctttcttatg 5101 gcggctgcgg gtattaatgc ggctcattta atgcaacagc aatctacacc gcagcaacag 5161 caacaagtct ttggaagcgg ccaacaacag gcgcaatcca accaaggtca tggaggaggc 5221 agcaatcaac atcatgtaga atttatgaac gaattgttgt cgaaaggcgc tgctgcggca 5281 gctgcggaaa atgttcctgg tatgaatggc aatcattttc ctctgatgca atttggtcta 5341 atggaggggc tgaatatgat gcaacaacaa ttccaacaag ccgtacagca tcacaataac 5401 ggttacaata tgtccgatgt tgcggcgccc aacgccctgg atactcttgg cttgggcttg 5461 ggtctatcgc atggcggcgg cgccggggca ccctccctat tcgaccaatt gcccggaaga 5521 aacgataatc atttgctggc catgatgatg agtggcggag cagctggaat gcctagcaac 5581 ttgtctctag ggggtcctac cgttggatcg gcgatacaag gagtgagcgg taaaaaggac 5641 actaattcga ccagcagcaa tggtgatcag gcacaacaac actcaagcaa attgcttata 5701 actcccaaac ccatcgaatc tatgatgcct agtccaccag ataaaaaagg ccaacattca 5761 catgcatcgc agcaggcaat ggttggcggg gtggtagcac cacctctaca atcgccatcg 5821 gaattaaaaa taccctcaac aacggcagcc ggggcagctg gtaatcaagc tattttcgcc 5881 caagcattca aaactcacga accaaatgtt aaaaatccca gttcgtggtc aatacttgcg 5941 ggatcgcccc aaaacacccc cacttcgaac aaagccaaac ctgccatgga ctcattccaa 6001 caattccgca acaaagccaa agaaaaggcc gaccgccaaa agcaactgga ggccgctgaa 6061 aaggagaaag aacagaaacg tcagaaagaa gccgccgaaa aggagcagca acgaaagcaa 6121 catcccaaac ctccgtccca tctggtaggt tcaagttcta actccagcaa tagtggcaac 6181 ggcaatggaa gcgctgttgg caatagtttg gctacaactc tcaccggatc gcatcaccaa 6241 tcagttgttg cctctggagg agtacagcca ccccacgccc atggtggtag tgtgagtgca 6301 gctcatttag cttcatcaat aatggatgtt acggaaagtg gcaggaaaag tgtgcacgat 6361 gttcagtcat tatcccgcgt tgttgatgac atcaaagctt ccccacaagg ttgtggctcc 6421 ccagctggca cggcccaaca atcgccacaa gatcgggctg ccgccaaacg tgccgagttg 6481 agacggatgg aacaagagcg ccgaagacga gaagcgagag ctggacaaat cgacatgaat 6541 atgcaaagtg atttaatggc agcgttcgaa gagacgcttt aatatatggc taaataactt 6601 ccacgtggga aactgttaaa atatatctcc tctttgttgt cataataaat attggatttt 6661 ctaattga