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LOCUS XM_013247702 4999 bp mRNA linear INV 02-SEP-2023 transcript variant X8, mRNA. ACCESSION XM_013247702 VERSION XM_013247702.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013247702.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4999 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4999 /gene="LOC106084176" /note="sex-lethal homolog; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 54 Proteins" /db_xref="GeneID:106084176" CDS 136..1113 /gene="LOC106084176" /codon_start=1 /product="sex-lethal homolog isoform X4" /protein_id="XP_013103156.1" /db_xref="GeneID:106084176" /translation="MYGQNIRNVAYNPYGYNGYRQSGERMWRMSHSLPSGMDTDFTSS YPGPSAMNPRGGRGGYNDFSGGGSAMGSMCNMAPAHSTNSINSGGDGGGGGDPQGVNG TNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNA IKTVNGITVRNKRIKVSYARPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGSIVQK NILRDKLTGRPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLTVRLAEEHGKMKAH HFMNQLGMGPPAAPIPAAGPGYNNMVHRGRHNKIRNQKMHPYHNPQKFI" misc_feature 136..1110 /gene="LOC106084176" /note="sex-lethal family splicing factor; Region: sex-lethal; TIGR01659" /db_xref="CDD:273740" polyA_site 4999 /gene="LOC106084176" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aatcgattag gaattcagtt tgcttcctcc cgcttgcgat ttgtatttta ttttttcgct 61 tggcacgcgc tgtgtgtatt ccgtgattcc ggatcccgtg gatcgtcttg tgtttttata 121 cttttcgttt gagacatgta tggccaaaac attcgaaatg ttgcttacaa cccatatgga 181 tataatggct acagacagag cggcgaacgt atgtggcgca tgtcgcactc actgccctct 241 ggcatggaca cagatttcac gtcatcgtat ccaggcccct cagctatgaa tccgcgcggt 301 gggcgtggtg gttataatga tttttcaggt ggcggcagtg ccatgggctc catgtgcaat 361 atggcgccag cgcatagcac aaattccatc aatagtggag gagatggtgg cggcggcggc 421 gatccccagg gcgtcaacgg taccaattta attgtgaact atttgcctca agatatgaca 481 gatcgcgaac tatatgcgct gtttagaacg tgtggtccca tcaacacttg tcgaatcatg 541 aaagactata agactggcta cagttttggt tatgcttttg ttgattttgc ttccgaaatt 601 gatgcccaaa atgcgatcaa gactgtgaat ggtattacag tgaggaataa acgtataaag 661 gtttcatatg cccgacctgg tggtgaatca attaaggata ccaatttata tgtcaccaat 721 ttgccacgta caatcaccga cgatgaactg gagaagatct ttggcaaata tggcagcatt 781 gtacaaaaga acatactcag agataaacta accggtagac cgcgaggtgt agcatttgta 841 agatttaaca aacgtgaaga agcccaagag gccatatcag ctttaaataa tgttataccg 901 gaaggtgcct cccagccatt aactgtacga ctggccgagg agcatggcaa aatgaaagct 961 caccatttta tgaaccagtt gggtatgggc ccaccggcag cgcccatacc agcggctggg 1021 ccaggctaca acaacatggt gcacagaggt agacacaata aaattcgtaa tcaaaaaatg 1081 catccctatc acaatcccca gaaattcata taaattcaaa tcgcaaatcg attttcaaac 1141 tagaactctt ctacaagtat gataagatga aaacaaaagt actttatatg catacatata 1201 taatatacat acatacatat atacacactc acatacaatt atatagatgt accctttgaa 1261 tagtaacgac gataatgcat ccacacaaaa tcgtgaggca tatttaacgg acatagtttt 1321 agtttttttc ttctcttctt cttcttatca aaatatatcg tcatagcaat acgagatacg 1381 gttttgcgta gacttcactt tctattagcc cccggcccgg tctctagctg ggcggacaaa 1441 caatgacata catcatacac gtgtatcgaa caagaatatg tttttgtttt gttttttttt 1501 tttttttttt taaatataag aactaacttc ataataatat aaaatagtgt tttctaacgg 1561 aaagatacaa cctttacata ggatatcgtg tttatgatgc aaaaaaacaa aaacaaacta 1621 aaatgagaaa tacaaattga agaattgagt ttttatccac agcaaaaggc agagtaatta 1681 ttactcacat gtattatggc aatattatag cacttctcct cccactacta taaccatttt 1741 tgaatttatg attgtattaa taataaaatt atatttaact gaagtaacaa attatgttta 1801 atgttccctc gaaagaaaag tgttaccccc cgcctatcga gcactaacaa ttggaattaa 1861 tattagaaag cttaaacttg ataccggttg attcagttgt tggattttta acccaacaca 1921 cagaaaagga gggcacaaaa gcttttctcc attattaaat ttgaaaatat gaaactggtt 1981 cacttgcaat tacttgttat ataaggaatg atttccttct acttctctca aggaatgatt 2041 tccgattccg aagttttagc tcaacgatag tgacattctt tttacgaacg agttcgaatg 2101 ttgtgccgtc atgttctcct cttggaagaa acgttttatg taaaccctaa tatggaccaa 2161 tttaacgttt ttatttcgtg agctcatgga aagctatttt ttgatgcaac tttaatgaat 2221 ttggaagctg tgaagtgtgt acatcacttg tttattcatt tatagtgcga gatttccgtt 2281 attcgttaga gatttccgca agtgtaaata tcactttatc atatcaatat cactttaaga 2341 acaatccatg gtggtgggta tacccattgg cctagccaat ttgtgctgtt ttcacttgct 2401 gcaaacattg ttgtcttcgt atattttatg caggtaaaca attaaggcct caaagtgaaa 2461 acagaatata acaacaaact caaagtagaa caaaaccaca gggattaaga gtcttctact 2521 tgttcttact tttttttttt aaattttttt ttatgcttct tcgttaaatg caataataga 2581 ttgaaaattt attttaaatc atattagttt ggttcaaata aaaatcatat attacgaaca 2641 agacagtttc acaccatttt ctaacgtcaa gctctcctct gaatcaaaat aattttgtgg 2701 aaaaacaatt gttggtatcg attataagta tgaagttcaa atataaattt ccacatagga 2761 aagcaattgg atgtgtccaa ctaacccgga agggaatcga acaattgatt taattagcca 2821 ctattacttg cggaaaataa atgactctat gctttgtccg tggttctgcc aactttgcaa 2881 atctatttca ggctgctaat aatggtatat gatgtaagtg ggtttaacca accaattacc 2941 gactatgtac ttttttttag aatataagtc taagccattg cagcactctg tccgcatgtc 3001 cgcctatgat gtcgaacgcc tgtgttcaaa tgctggcgag aacataagaa aaaaaactgt 3061 gagaggtggt tacaccctac cctgcgtccc ccttgtcatt aagcttgaac ttgaatcgga 3121 cagcacccat tgataagtca gaagtttgtc cctgctcctt aatcagttgc attgacttcg 3181 tatagaacta catagatatg tacgtatgta tgtatacctt gtctgctaac tatgggaatt 3241 gtcttcgaaa tcccacaaca ttggaaatga ataagaaaaa gaatttgggc taagaacaat 3301 taatgttcta tctccttcag ctaagtttaa tgatcttgta tgtattccat gtaacaaaat 3361 ctgaaaactg agtctattta tgctcccaaa tagaacatat acattacgtc ggtagaatgc 3421 tgttttgttc catacgccac ttttacacac ttgaagtttg caaaatacac aaaatatttg 3481 gcatatttac acctcaatat ctcggaaact aaatacggta cgaattgaac atcagaaaat 3541 atacacagaa aaaaaatagc aaaaaaattt tcaatttaaa attttattga aaattaaatc 3601 gatttcagga ggccaccgta gcgtagaggt tagcacgtcc gcctgctgat ccgatgctga 3661 acgcctgggt tcgaatcctg gtgagaccat cagaaaaaat tttcagcggt ggttttcccc 3721 tcctaatgct agcaacattt gagaggtact atgccatgta aaacttctgc tataaaaagg 3781 aggcccctta ccattgagct taaacttgaa tcggactgca ctcattgaag tgtcagaaat 3841 ttcccccgtg ttccttagtg gaatgttcat gggcaaaatt tgcatgtaca aaatcgtttc 3901 caattaaaaa attgattgat tcaatcattt ttgaattgaa tgtgactttt ttccaattac 3961 agtcgtgatt gaaaatttta ccattttcaa ttaaaaaact aattgattca attaattcaa 4021 ttcaattgaa tctgaaaatt ggttgattca atcatttttg taatcgaatc ttaaaaaaat 4081 tttcaaatac ggtgctttag taaattcaat taaaagctat tttgtcccct acgatagaaa 4141 tggaaggaga tttcacccat gcgtccaaca attcgacaaa tctatatcat gacagccgct 4201 tctacgttcc ggattaatct gatggagtcc ttcattggcc aaggactaac caccacaaca 4261 cactgcacgg gataaccatg agcaccacac ttgtttgaac tttgagctcc aatctgtgtg 4321 ttcattgtta tcacgagaag cttagcttcg agctaccgtg tgcatccaca gtttgcgtat 4381 agtggaatgc cccatacgga gtagcttcaa cgacagtcag agtgcctatg tgcctatcgg 4441 tattggcgcc tttaaataac caatggccat cttgttcccg cggcgatcga tcctttggac 4501 cggaacgacc gaccgcccga tttgagatct tgagctccta taagtcgcaa ttgttatccg 4561 atttggctga aattttgccg gtgatgttct gttacaattt caaaagccgt gtcaaggaga 4621 atccaaatcg gtctataacc tgatacagcc tccatacaaa tcgatctccg gattagtctt 4681 ctaaagcttc aaaaattggc tatttctaaa acttcaaata attggcaaaa aggtgagagg 4741 tagagtacac atgtgccctt caactatttt ttttttaaca attccatggc agctggttgt 4801 acgcactgct gcaacaacaa ctaaatttta agttgggtgt gggctctcaa tattcggctc 4861 agccgagtcg gaccgatttt tcttttttaa tatttaatat tacgtacgta tcacacgatt 4921 tgtgaatttt ttagagttgc cacatttgaa aatacatatg agaatatata tcgtttaata 4981 ccacctttag cacattaaa