Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_013247645 1553 bp mRNA linear INV 02-SEP-2023 ACCESSION XM_013247645 VERSION XM_013247645.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013247645.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1553 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..1553 /gene="LOC106084141" /note="cdc42 homolog; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 56 Proteins" /db_xref="GeneID:106084141" CDS 123..698 /gene="LOC106084141" /codon_start=1 /product="cdc42 homolog" /protein_id="XP_013103099.1" /db_xref="GeneID:106084141" /translation="MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTV MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIQ HHAQKTPFLLVGTQIDLRDETSTLEKLAKNKQKPIGIEMGEKLAKELKAVKYVECSAL TQKGLKNVFDEAILAALEPPEPAKKKKCRFL" misc_feature 129..653 /gene="LOC106084141" /note="cell division cycle 42 (Cdc42) is a small GTPase of the Rho family; Region: Cdc42; cd01874" /db_xref="CDD:206664" misc_feature order(129..131,135..137,213..218,225..230,234..239, 243..245,249..251,276..278,288..305,312..323,330..335, 339..344,429..434) /gene="LOC106084141" /note="GEF (guanine nucleotide exchange factor) interaction site [polypeptide binding]; other site" /db_xref="CDD:206664" misc_feature order(132..134,141..161,168..170,180..185,189..191, 204..206,210..266,276..281,291..311,321..326,330..332, 468..470,480..482,618..620,630..632,639..644,651..653) /gene="LOC106084141" /note="ACK tyrosine kinase interaction site [active]" /db_xref="CDD:206664" misc_feature 150..173 /gene="LOC106084141" /note="G1 box; other site" /db_xref="CDD:206664" misc_feature order(159..176,207..209,216..221,225..227,291..296, 300..302,468..470,474..476,597..602) /gene="LOC106084141" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:206664" misc_feature order(180..185,228..230,234..236,240..242,258..260, 321..323,330..332,639..644,651..653) /gene="LOC106084141" /note="CRIB effector interaction site [active]" /db_xref="CDD:206664" misc_feature order(189..197,231..233,237..245,249..251,255..263, 312..314,618..620) /gene="LOC106084141" /note="Par6 cell polarity protein interaction site [active]" /db_xref="CDD:206664" misc_feature 195..242 /gene="LOC106084141" /note="Switch I region; other site" /db_xref="CDD:206664" misc_feature order(216..218,222..224,228..233,303..314,321..323, 330..332) /gene="LOC106084141" /note="GAP (GTPase-activating protein) interaction site [polypeptide binding]; other site" /db_xref="CDD:206664" misc_feature order(225..230,297..299,312..314,318..323,327..332, 339..341,429..434,438..440) /gene="LOC106084141" /note="GDI (guanine nucleotide dissociation inhibitor) interaction site [polypeptide binding]; other site" /db_xref="CDD:206664" misc_feature 225..227 /gene="LOC106084141" /note="G2 box; other site" /db_xref="CDD:206664" misc_feature 291..302 /gene="LOC106084141" /note="G3 box; other site" /db_xref="CDD:206664" misc_feature 297..353 /gene="LOC106084141" /note="Switch II region; other site" /db_xref="CDD:206664" misc_feature 465..476 /gene="LOC106084141" /note="G4 box; other site" /db_xref="CDD:206664" misc_feature 594..602 /gene="LOC106084141" /note="G5 box; other site" /db_xref="CDD:206664" polyA_site 1553 /gene="LOC106084141" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtcagcgacg gcgcgccgac gtcgaaaatc aactcgtctt cgtactctgc ttcttacttc 61 ttattgtgag tgtgaattcg acgatctgcc caacccatat tcaaaaaaac taacgcagaa 121 caatgcaaac tataaagtgt gttgttgtag gtgatggtgc cgtgggtaag acctgcctgc 181 ttatctccta cacaaccaat aaattccctt cggaatatgt acccaccgta ttcgacaatt 241 atgctgtcac tgttatgatt ggtggcgaac catacaccct gggtcttttc gataccgctg 301 gtcaagagga ttacgatcgt ttacgtccat tgtcatatcc acaaacagat gtattcttgg 361 tgtgtttctc agtcgttagt cctagttcat ttgaaaatgt aaaagagaaa tgggtgccgg 421 aaattcaaca ccatgctcaa aagactccct tcctgttggt gggaacgcaa atagatttgc 481 gtgatgaaac cagtacattg gaaaagttgg ccaagaataa acagaagccc attggcattg 541 agatgggcga aaagttggct aaagaattaa aagcagtcaa atatgttgag tgttctgctt 601 taacacagaa aggtcttaaa aatgtattcg atgaagccat cttagctgca ttggagcctc 661 cagaacccgc caagaaaaag aagtgcagat tcttataatt tctatgtgta ttataattta 721 ttgaaaataa cacaagatac acgcaatcat aaattctaaa gcataacaac aacaacaaaa 781 aaacacaact attggattac taacgaaaac agagaaaagt tatttgaaaa gcgtcatttg 841 atttgattat taaatttgaa aacgaacagc aggaggagat ttaactcgga tgtgtctagc 901 ttttgtataa ggtaaattgg aaccagcagc agtagtagat aacaacacac aataatcatt 961 atttgcaatg agaatctttg atagtcctaa aataacagag atttaattaa caccaacatt 1021 ataatacgta atgttataaa aacaaaaaca aatactattt ttagaaaaca ctaaaaatga 1081 tcgaacttca taatgaaatc taacaaagaa acaacactac taatggcagt aacaataatt 1141 tattatctct catgtcatgt catgaaagtg aataacaaaa ccaaaagaat attgaaagaa 1201 taaaacaaaa cgcaacattt aactgaaaaa aaatatagtt atttgtcatt ggacatgtga 1261 agcaatcttt cttaaaaaaa aaaaaacaca acaactacac agttttgcta tactacaaca 1321 acaacaagaa aacataacat ctattgttaa agatacatat taaaaaagaa gtcatttgca 1381 gcatacatca gtaatatata acacatatac acttatatat acaccgctcc tttttccttc 1441 cctccactaa cgtttcgttt ttttctttac cataatttaa gtttgcgctt tgaaattgcg 1501 tgtataagcg ttaaggcaaa gaaccccctc aacacaagta atactttttt ttt