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LOCUS XM_013247623 8771 bp mRNA linear INV 02-SEP-2023 transcript variant X2, mRNA. ACCESSION XM_013247623 VERSION XM_013247623.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013247623.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8771 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..8771 /gene="LOC106084130" /note="protein sevenless; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins" /db_xref="GeneID:106084130" CDS 373..8355 /gene="LOC106084130" /codon_start=1 /product="protein sevenless" /protein_id="XP_013103077.2" /db_xref="GeneID:106084130" /translation="MSNYKSAIKSTSSTTKTTRFTSMSKSTETPTPQRRQQQQQQQQR YQRSITQASTKFILINLLILPQCLVLCAATTTRQQQQPLEHKYQQTLASNAAAAAAAD DGDSLSVLAVIGLPTISSQATSANVTHNAARENGSGNVTTPAVETEDQSAPTAATAPA VNDLNMDINQLITHLTNATLFNDALSQEYDTTTVSLLGNVTHSCLQTCIEEETKFQND FGVKCSMGDNRTECYRRRCFNGCELWWNALKEFEPCQEACSSLQFYPYDLPCISACEQ SQRLYWHLQRLRVERVVTTLQPQLLHDNEVVNTLTLKWPIALEQLPAQYLASRPFNIQ YRYELRPSVTATATATAKGTSMAGETFLKIDDDHANNATKLQQKEDYTQQETDIAEQW WNLADYNCNENFECDIMDGLVPYTSYRFRFELPFGQNLDDVLYTPASEVYTTPAMGAP ISPPLIIQALALDKDHVAIFWEKGKFTNGPVTNYKILIAESFEGNSGTEHKELLPSNA SYYIFPNAHHHQYTIRLSMLNQDGEGPYAETMVRKINAINDPALKLDVNSLLVAGEYS LILKSLDPLIETKTLFKSEEILMDFDVLQHSRQVFVVNAKGHIFSFYVDNALNYTQIH LKPEIEGFVVRKLSVDWLNQMIYMAGEISSNTWQIVSTDLQGSGLQFIATNLTKSLKQ LQVDPVNGWLFASDEEGHITKIDLFSKKSTNLARSLENGLFYVDYQSYLLKSYDLKEK ILQELSFDGQYHKKLGRAMTGKLQGDLMNFHYVGNNVLWASNATHFLKQDFSHKEEEL IFISELEVCGKMVPFLTSQQARLVQPLPRPMEEPQLKETILSDTKAIIMWSAPAQVQQ FQSQACWRNWEYELEIMDVSSNSAFNIRSIRSTFFVVERLQANNLYKIKVRALFSGAN GRMMGQAEPSPWSEELHTRTWPMAKHRLLWASQAGLYESDELAEEVEIRGLAAENIQS FVQVNSSLFYVNYPERSLKCYNLLHNHLPCGFEAENVLSLDYDWRGGKMYWSDVKRNC LVRSDLKGGPRELLPLFEARYLKVDSSKGFIYYTTDTKLVRRYLNGFMPSQEVEYYHV NGNGESIRGFVIVAQYLYWLVQHQEEYTKLFRCPLDYQMEEVEEVLQLPNDMRVRLNS LQYVKEIEGFMFLNEKDNSAIFLRQEKLNRISRIQLPFKHRLNQVRLLTSEAAPFRDE SIVPEPLDREAIEITEGYWDDFNIKWVGPNNAQNLSIFYKVLITPMARNSSTSQEVLT FEVSQPLVRITEFRMASHMIDVTITPETLWAKGPATSVQLKTPSAAPKQPKNLRVYVE HLQEPLQDEANVTALVRWDSPDNISQEKEAFYKVFCWLKDELHSVKDIEDMGLKSHEV KFYNLMREESYMFQVQAFSLSRSKGGEKTALLTHFINPEMQASPKLIYSTSELIGELD LDLNVSKTWIYTSSEVEHMALMSGEQRLLWVNENVELMTYQPGSASLKLARMRAEVLS LAVDWIQRKVYWAELSGDAERAVDIYELPLNNYEGKVMMGSLLFSLSKGKLLKDMVVL PFSHTLLWLEHESGGDNCTLQARNLTDLLEIKLKNLPPLPLLNMFEGSWHSDMETINL VDYKGKLYAYEVQRHLLTNLKIPTSSGDHIRNYERDSGYIYSLGNRTIKAYNRRKHNL EFSLNMPEVRVIKAFNFQPYPKRECLLPADSEVVAEKQQSMEYEERNLFPYQVGESFM ELTLPLVNSKGNCRLPIPGLRYEISLSNNLDYDESFKVEENLEKLNITNLKPYTNYSV NIEASSYYQQRLAHTHINYPEFYVSTLEGTPWKPSNFSLQALSPTEVLVSWQEPEQLN AAQVLYVLNFKKFGENSATSQLTLEGFEKILENLEPDSKYTMSLMVLSGERKNETEPL HVYTYPQPWPLQLLDKQAYNMTLLWHPNTVYSSAILECLPHSQEPEITPFSIDISGID GNITLVNLQPKTRYEFYLKLKFPTTARTYVWPTQQSNNFIYETLGDVPGRPGKPCIEH ITGEIFKISWLAAAAHGALSIDYSLEALQARNPKRIRREAVISSNSPSPVSSNGYAPN VHTMISQLPWVEELQPIEDKWIVYCNTSETSCIIRDLHTLHLLMFRVRAHSEAYGWGP YSEDSDRVLEPYVSPQKRNSLVLAIIAPALIVGTCVIILFIIRKVHKRRMKAKKLLAK SRPSIWSNVSSMQQQMTARNRGFSMTSNCTMYTGGPLSDADIALLPHIQWSQISLLNF LGSGAFGEVYEGLMKHEDDEVPEKVAIKTLRKGASEFAELLQEAQLMSNFKHDNIVRL IGVCCDTESISIIMEHMEGGDLLSYLRESRPSSQKPVASLQLLDLMSMCIDVATGMAY LEDMHFVHRDLACRNCLVSSRIPSKRTVKIGDFGLARDIYKNDYYRKEGEALVPVRWM APESLVDGVFTTQSDVWAFGVLCWEILTLGQQPYAARNNFEVLSYVKDGGRLEQPDNC PDKFFALMSECWRNDAEARPTFRKIFNSLLSIKTDVRRVSLGYNIDDSDYAMYANQHG ILFSTFLGTPLNKVNEEEDEQDVDDDDDDDGQNAITYETQQNLKNEEEIKLNTNKAGD KFELANEKIDMKVRFENNLTKTTTAKTDDGGEAHMTDETHLIDAKLYRMQENPDYYVN EGISRL" polyA_site 8771 /gene="LOC106084130" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gatatcgaaa acaaacgcac attaacggtg taaatttttt ctcaatgtat tgagtttttt 61 tgcaaaaact atcgtgacac aataatatta aaccgtcgat agttttgttt gagtgattat 121 attgtgaatg gttataagat aatgatcaac gattaatcaa actaaactgt cattaacgga 181 ttcgaagtaa aaaaaaacaa caaagaatac aactcaacta atttgataat taaaaaacaa 241 aacaccaaaa aaagaaacta aaaatagaat accgaaaaaa aaaaaccgaa aaccccctaa 301 tcaaatcacc aacaccattt taaatcgcat aaatgtcaaa gtttgccaaa tgtcaaagtg 361 tcaagctgta aaatgtcaaa ttacaaatca gccataaaat caacgtcatc aacaacaaaa 421 acaacaagat tcacatccat gtcaaagtca acagaaacac caacaccgca gcggcggcaa 481 cagcagcaac aacaacaaca acgatatcaa agaagcatca cacaggcttc tacaaaattc 541 attttaatta atttattaat tttgcctcaa tgtcttgtgc tatgtgcggc caccacaact 601 cgacaacagc aacaaccatt agagcataaa tatcaacaaa cgctggcctc gaatgctgct 661 gcagcagcag cagctgatga tggtgattcc ttgtcagtgt tggcggtaat agggttgcca 721 acaatttcat cgcaggcaac ctcagcaaat gtcactcaca acgcagcaag agaaaatgga 781 agtggaaatg taactacccc agctgttgaa accgaagacc aatcagcccc tactgctgcg 841 acggcccctg ctgttaatga cctaaacatg gacattaatc aattaattac ccatttaaca 901 aatgcaacac ttttcaatga tgctttatcc caagagtacg acacaactac agtgtcattg 961 ttgggcaatg ttacgcattc atgtctgcag acctgcattg aggaggaaac aaaatttcaa 1021 aatgattttg gcgttaaatg ttccatgggt gataatcgaa cggaatgcta tcgaaggagg 1081 tgtttcaatg gctgtgaact gtggtggaat gccttaaagg aatttgagcc ttgccaggaa 1141 gcatgttcct ccttgcaatt ttatccttac gacttaccct gcatttccgc ctgtgaacaa 1201 tcacaaaggc tctattggca cttgcaacga ttacgagttg aacgagttgt gactacacta 1261 cagccccagc tgttgcatga caatgaagtt gtgaacacac tcacccttaa gtggcccatt 1321 gccttggaac aattgccggc ccagtatttg gccagccgtc catttaatat acaataccgc 1381 tatgagttaa ggccgtcagt gactgcaact gcaactgcaa cagctaaagg gacttcaatg 1441 gcaggagaga catttttgaa aattgacgac gaccatgcca acaatgcgac aaaattgcag 1501 caaaaggaag attatacgca acaggaaacg gatattgctg aacaatggtg gaatttggcc 1561 gattacaatt gtaatgagaa tttcgaatgt gacatcatgg atggcctggt gccatacacc 1621 tcctacaggt tccgttttga attacccttt ggccaaaatc tagatgatgt tctttacact 1681 cctgcttctg aggtgtatac cacaccggcc atgggtgctc ccatatcgcc gccccttata 1741 atacaagccc tggccttaga taaggatcat gtggctatat tttgggaaaa gggaaaattt 1801 accaatggtc ctgtgacaaa ttataaaatt cttatagctg aaagttttga gggaaatagt 1861 ggcactgaac acaaagagtt attaccctca aatgcttcct attacatttt tcccaacgcc 1921 caccaccacc aatacaccat acgcttgtct atgctaaacc aggatggcga aggtccctat 1981 gcagaaacta tggtacgaaa aatcaatgcc ataaatgacc ctgccctaaa attggatgta 2041 aattccctac tggtggccgg cgagtatagt cttatcttga aatccttgga tcctttaatc 2101 gaaaccaaaa ctttgtttaa aagtgaagaa attttgatgg atttcgatgt gctgcaacat 2161 agcagacagg tgtttgtggt gaacgctaag ggtcatatat tcagttttta tgttgacaat 2221 gcattaaatt atacccaaat tcatctcaag cctgaaatcg agggttttgt tgtgaggaaa 2281 ctttcagtgg attggctaaa tcaaatgatt tatatggccg gagagatttc ttccaatacc 2341 tggcaaattg tttccactga tctacaaggt tctggcttac aattcatagc caccaattta 2401 acaaaatcct tgaagcaatt acaagtagat cctgtaaacg gctggctgtt tgcatcagac 2461 gaggaaggtc atataacaaa aatcgatttg ttctctaaga aatctaccaa ccttgccaga 2521 tctttggaaa atggtttatt ctatgtggat tatcaaagtt atttgctcaa aagctatgat 2581 ctcaaggaga aaattctgca ggagctaagt tttgatggcc aataccataa aaagttgggg 2641 agagcgatga ctggcaaact acaaggcgac ttaatgaact tccattatgt gggcaataat 2701 gttctgtggg cttccaatgc cacacatttc cttaagcagg attttagcca taaagaggag 2761 gagttgattt ttatctcaga attggaagtt tgtggaaaga tggtgccttt tttgaccagt 2821 caacaggcac gtttagtaca gcccctgccg cggccgatgg aagaacccca gttgaaggag 2881 accatattat cggataccaa ggccattatt atgtggtccg cccccgcaca ggttcagcaa 2941 ttccaatcgc aggcctgctg gcgtaactgg gaatatgaat tggagataat ggatgtgtcc 3001 agcaatagtg ccttcaatat acgcagcata agaagcacct tttttgtggt ggagagattg 3061 caagccaaca atttgtataa aatcaaggtg agggccctat tttcaggggc caatggcaga 3121 atgatgggtc aagcagaacc cagcccatgg tctgaggaat tgcatactcg cacttggccc 3181 atggccaagc atagactgct atgggcctct caggcaggct tgtatgaaag tgacgaattg 3241 gctgaggaag tggaaatcag gggcttggct gcggaaaaca ttcagagttt tgtgcaagtc 3301 aacagctcct tgttttatgt gaattatcct gaaaggtctt tgaagtgcta caatttgctg 3361 cataaccatc taccctgtgg ctttgaggcg gaaaatgttt tgagtctgga ctatgattgg 3421 cgcggtggca aaatgtattg gtctgatgtc aaaagaaact gcctggtgcg ctctgatttg 3481 aagggaggcc ctagggaact gttgccctta tttgaggctc gctatttgaa ggtggactcc 3541 tcgaagggct ttatctacta taccaccgat acgaaactgg ttcgacgtta tctcaatggc 3601 tttatgccca gtcaggaggt ggagtattat catgtcaatg gcaatggaga gagcataaga 3661 ggctttgtca tagtggccca atacctgtat tggctggtgc aacatcagga ggagtatacg 3721 aagctgtttc gttgcccttt ggattatcaa atggaggaag tggaggaggt gctgcaatta 3781 cccaacgata tgagagtgcg attgaattcc ttgcaatatg ttaaggaaat cgagggtttt 3841 atgtttttga atgaaaagga taactcggcc atttttctaa ggcaggagaa actcaatagg 3901 atatcgagaa tacagctgcc ctttaagcac aggctcaacc aggtacgcct gcttaccagt 3961 gaggccgccc cctttaggga tgagtccata gtgccagagc ccttggacag ggaggccata 4021 gagataaccg aaggctattg ggatgatttt aacatcaaat gggtaggccc caacaatgcc 4081 cagaatttaa gcattttcta taaggtgctg ataacaccta tggcgcgcaa ctcctcaaca 4141 tctcaggagg tcttaacctt tgaggtctcc cagcctttgg tacgcattac cgaattcaga 4201 atggcctctc acatgattga tgttaccata accccagaaa ccctgtgggc caagggtccc 4261 gcgacctcag tgcaattgaa gactccctcg gcggcgccca aacaacccaa gaatctaagg 4321 gtctatgtgg aacacttgca ggagcctttg caggatgagg ccaatgtgac agctttggtt 4381 agatgggact ccccggataa tatttcccag gaaaaagagg ccttctataa ggtcttctgc 4441 tggctcaagg atgaattgca cagtgtcaag gacatagagg acatgggcct caagagtcat 4501 gaggtgaaat tctataacct aatgcgggaa gagtcctata tgtttcaggt ccaggctttc 4561 tccctcagcc gctctaaggg tggtgagaag accgctttgt tgacccactt cattaatcct 4621 gagatgcaag ccagccccaa attgatatac agcaccagtg agttgatagg agagctggat 4681 ttggatttga atgtctcgaa gacatggatc tatacctcca gcgaggtgga gcatatggct 4741 ttgatgtctg gggaacagcg attgctgtgg gtcaatgaaa atgtggaatt gatgacctat 4801 caaccgggtt cagcctccct gaaattggca cgcatgcgcg ccgaggtctt gtccttggcg 4861 gtggattgga tacaacgcaa agtctattgg gccgagttgt ctggagatgc cgaaagggca 4921 gtggatatct atgaattgcc tttaaacaat tatgagggca aggtaatgat gggctcgctt 4981 ttgttttctc taagcaaagg taaactcctc aaagacatgg tggttttgcc tttttcccat 5041 accctcttat ggttggagca tgaaagtggc ggggataact gtaccctaca agcccgcaat 5101 ttaaccgatt tgctggaaat aaaactgaaa aaccttcccc ctttaccctt gctcaacatg 5161 ttcgagggct cttggcatag cgatatggaa accatcaact tggtggatta caaaggcaaa 5221 ctctatgcct atgaagtgca gaggcattta ttgaccaatc tcaagatacc caccagctct 5281 ggagatcaca tacgcaacta tgagagggat tccggctata tctatagcct gggaaatcgt 5341 accataaaag cctacaatcg ccgcaaacat aatttggaat ttagccttaa tatgcccgaa 5401 gtaagggtga taaaggcctt caatttccag ccctatccca aaagggaatg cctactgcct 5461 gccgatagtg aagtagtcgc agagaagcag cagtccatgg agtatgaaga gcggaattta 5521 ttcccctacc aagtgggtga aagttttatg gagcttacac tgcctttagt caatagcaaa 5581 ggaaattgcc gcttgcccat acccggtctg agatatgaaa tatccctaag caataatctg 5641 gactatgatg aaagcttcaa ggtggaggag aatctggaaa agctcaatat aaccaatctc 5701 aaaccttata ccaattactc ggtcaacata gaggcctctt cttactatca acagagacta 5761 gcccacaccc acatcaatta tccggaattt tatgtctcca ccctggaggg aacaccttgg 5821 aaaccctcca actttagctt gcaggcctta agccccaccg aggttttagt cagctggcaa 5881 gagcccgagc aactcaatgc tgcccaagtt ctatatgttc tcaactttaa gaaatttggt 5941 gaaaactctg ccacttctca actcacccta gaagggtttg agaaaatctt ggaaaacctg 6001 gaacccgatt ccaaatacac catgtcccta atggtcttga gtggtgagag gaaaaatgaa 6061 accgaaccct tacatgtcta cacctatcct cagccttggc ctttacagct gttggataag 6121 caggcctata atatgaccct gctgtggcat cccaacactg tctacagttc agccattttg 6181 gaatgtctgc cccatagcca agaacccgag ataaccccct ttagcattga tatctccggc 6241 atagatggca acatcacatt ggtgaatctt cagcccaaga cgcgttatga attctatttg 6301 aagttgaaat ttcccactac agcccgcact tatgtatggc ccacgcagca gagtaacaat 6361 ttcatatatg aaactctggg tgatgtgcct ggtaggccgg ggaaaccctg catagaacat 6421 ataacggggg aaattttcaa aatatcttgg ctagcagcgg cggctcatgg agccttaagc 6481 atagattata gtctggaggc tttgcaggca cgcaatccca agcgcataag aagggaagca 6541 gtgatttcaa gtaattcccc ctctccggtt tcaagcaatg gttatgcccc taatgtccac 6601 accatgatat ctcagttacc ttgggttgag gaattacaac ccatcgaaga caaatggata 6661 gtctattgca atacctcgga gacaagttgc ataatacgcg atcttcatac cctacatttg 6721 cttatgtttc gagtaagggc ccacagtgag gcctacggtt ggggtcctta cagcgaggat 6781 agtgatcgcg ttttggaacc ttatgtctca cctcagaaac gtaattctct ggttttggcc 6841 attatagcgc cggctttgat tgtgggaacc tgtgtcatca tattgtttat tatacgcaaa 6901 gttcacaaac gccgtatgaa agccaaaaag cttttggcca aaagtcgtcc cagcatttgg 6961 agtaatgtct ctagcatgca acaacaaatg actgctcgca atcgtggctt ttcaatgacc 7021 agtaactgta ccatgtacac tgggggccct ttgagtgatg ctgatattgc cctactgcct 7081 catatacaat ggtcacaaat ttctttattg aatttcttgg gtagcggtgc ctttggcgaa 7141 gtgtatgagg gtttgatgaa acatgaggat gacgaagtgc cagaaaaggt ggccataaag 7201 acccttcgca aaggtgccag tgaatttgct gaacttttgc aagaagccca gctgatgagc 7261 aatttcaaac atgataacat agtccgcttg attggtgtgt gttgtgatac cgaatccata 7321 tccataatta tggaacatat ggaaggagga gatctactca gttatctgag ggagtccaga 7381 ccttctagtc aaaaacctgt ggcctcctta caacttctag atctcatgtc catgtgcatt 7441 gatgttgcca ctggcatggc ctatttggag gatatgcatt ttgtgcatcg tgatctcgcc 7501 tgccgcaatt gcttggtttc ttctcgcatt cccagtaaac gtactgtgaa aataggagat 7561 ttcggtttag cccgagatat ctataaaaac gactactatc gcaaagaggg agaagcattg 7621 gtaccggtgc gttggatggc tcccgaaagt ttagtggatg gtgttttcac cacccaatcg 7681 gatgtatggg catttggtgt gttatgctgg gaaattctaa cgctgggtca acaaccttat 7741 gctgccagaa ataattttga agtgttatcc tatgttaagg atggaggaag attggagcaa 7801 ccagacaact gtccagataa attctttgct ttaatgtccg aatgttggcg aaatgatgcc 7861 gaagctcgtc ccactttccg caaaatcttc aattccctgt tgtcgattaa gaccgatgtg 7921 aggcgcgtta gtttgggcta caacatcgat gacagtgatt atgccatgta tgccaatcaa 7981 catggcattc tgtttagcac cttcttgggc acacccttga acaaggtaaa cgaagaggag 8041 gatgaacagg atgttgatga tgatgatgat gacgatggtc aaaatgccat cacctatgag 8101 acacaacaaa atttgaaaaa cgaagaagaa atcaaactca acaccaataa ggcaggcgat 8161 aaatttgagt tggccaatga gaaaattgat atgaaagtac gttttgaaaa taatctcacg 8221 aagacgacaa cagcgaaaac tgatgatggt ggggaggcgc acatgacaga tgagacacat 8281 ttgatagatg caaaattata tcgcatgcaa gagaatcccg attattatgt taatgaaggc 8341 atatcaagat tatagggctg gagtagctct atagattgta caacacaaaa accgcccttt 8401 acaccttcca tgtagtgaga gattgaaaga aagagaggga gagagagaga gagagtgtag 8461 aaaaatgcca aagtataaaa aaattatttc gcaaatctat ggagactgtt tatattttat 8521 aactctaatt ttcaagtgaa atttttaaca cattttgttt tatttatttt ttttttctat 8581 gatgttaaat taacacaggc ctagtctata agtttattac tcattcattg tttttagaaa 8641 taatttatta taagatttaa tttaagcttg gtaaaaaatg tcaaagccta gtgcctctga 8701 gaatttttaa gaatttttga aaataagaac tctttctaag ccaggattaa agattgaaat 8761 ttgaatggtg a