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LOCUS XM_013247218 5660 bp mRNA linear INV 02-SEP-2023 ACCESSION XM_013247218 VERSION XM_013247218.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013247218.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5660 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5660 /gene="LOC106083911" /note="calpain-D; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:106083911" CDS 345..5291 /gene="LOC106083911" /codon_start=1 /product="calpain-D" /protein_id="XP_013102672.2" /db_xref="GeneID:106083911" /translation="MGTIASVLQWSCNNCNVINPTESLKCINCGSVRKKDGTLNSGQS NKPSIGQAGGGKEPATPGDNKSPSTLCNRQQTPSQLQQHNPTPPQQAPLTPQPLETEH DDTLANRNEYKRVYKSLLRGCLKRPQRNQQHLPANCVDCENTRKYVKNSIELFHHFSN PSLNRRWVCDKCDTDNNSVTWHCLICDTVSYLAPIYKETLSHRKLPHYKQSSFDGGQH LDGKLKRNDKKIPYFRRTQSLTSDKSFSYRSCHICFVNNRKDIFNLPETFMHKYSASG AQSSDEIFGRTFEQLPPLQQQSSRRLNQLVGGKDTICRKHNQSQNQSQQHQHQHHQQH REPKCNFTITTLSRANKVDDASKKFTIPRNSVFIAVNDSWATPELDSTTTTTSSTHQA AGVSGGASCGGVGGVISSNNAIGSDEKRRYRQPVIKAESLPQYCDRTDSIERKSLQRR GSNETGTSGICYATFSKGMYKPQHIYENDCIIQRPSIVSRAVGAASDETGDNATAANA SNHPLYAVVNKNNKSKNKQTNELQVISAVQQQPLQQHINDGQTKSATASATAAALATH LLNNNNHHNNNVNVNAKLRANSSHPSSTSTSACSTADIMGNMLPTDTTILDATGGGSS SGGLAVGGLRLDHQHHHNQGAVTKTTSHTHASNKYDPILTTTITADALKSDSNAEHSI YAKVWKGPRKTSESKISIVPAASNRGGDNIGTPTVAATRIDNNSIPNSRRMWTCTNCS YAYNRMWTERCEICENLRTQPSLTQPNLITVTKTDITTTDNLPRSHDPATTWTCKKCT LVNSTKDHACVVCGGSKLKSISSIEDMTLRKGEFWTCSQCTLKNSLATGVCSACKAVR TLPIESDRERMVGPIPEELHRNVNHIGGNMLISDAISPGMGTHRPSAANVTPTSNLQL PPIRTSRSPSPRQNRSSSGAIPKRHSTGGSGGILPRNTTVSTSSSSNVISSTSQQLLQ HRHSSSGSAGSGIKTWQCPACTYDNSSASVVCEMCSSPRGLVNNITKMALLHKTNRHS AELQQESKLMENLRRIEEAEALHKWENIIQYCRDNNELFVDDSFPPAPKSLYYNPQQS MAEGNPVVQWRRPHEINCDGGAFPPWAVFRTPLPSDICQGVLGNCWLLSALAVLAERE DLVREVLVTKEICPQGAYQVRLCKDGKWTTVLVDDLLPCDKRGHLVYSQAKRKQLWVP LIEKAVAKIHGCYEALVSGRAIEGLATLTGAPCESIPLQASSLPMPSEDELDKDLIWA QLLSSRGVRFLMGASCGGGNMKVDEDEYHRKGLRPRHAYSVLDVKDIHGHRLLKLRNP WGHFSWRGDWSDDSDLWTEELREALMPHGASEGVFWISFEDVLNFFDCIDICKVRSGW NEVRLKGTLQPLCSMSCVLLTVLEPTEAEFTLFQEGQRNSEKSQRSQLDLCVVIFRTR SPASPEIGRLVEHSKRQVRGFVGCHKMLERDIYLLVCLAFNHWHTGMEDPHQYPRCIL AIHSSKRLLVEQITPPQHLLADAIISLTLTKGQRHEGREGMTAYYLTKGWAGLVVMVE NRHENKWIHVKCDCQESYNVVSTRGELKTVDSVPPLQRQVIIVLTQLEGSGGFSIAHR LTHRLANSRGLHDWGPPGATHCPPIENVHGLHAPRLIT" polyA_site 5660 /gene="LOC106083911" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tcgactttta gttctctgag acggacacgg tcgcgatttt ctgcaaaaat ttaatttata 61 catagtctta aataaacaca tatttcggta atatttacaa tgcagcagat taaatgatag 121 caaccattac atatgtgtta attcaaataa aataaaataa tgctgtttta agcacaaaag 181 acgcttactg aaaaaggggg tggaaaattt ttgtgggtgg cctcagaaag aaatgaatga 241 atttgactgg attggcgata aacatcttaa gaaggaaata agtgatatcc ttacttgtaa 301 cttggttgat aaaacttggt ggaagtaaca atcgagttgg gacaatgggc acaatagctt 361 ccgtgctgca gtggtcctgt aataattgca atgttatcaa tcccacggaa tcattaaaat 421 gtataaactg cggttcagtg cgcaagaaag atggcactct gaactctggt cagagcaaca 481 aaccctccat tggccaggcg ggcgggggaa aagaaccagc gacaccggga gacaacaagt 541 cgccatctac attgtgtaat agacaacaga cgccatcaca gctgcagcag cataatccaa 601 ctcctccaca acaggcacca ctcaccccac agccacttga aacggaacat gatgatacat 661 tggccaacag gaatgaatac aaacgcgttt ataagtcgct acttagaggt tgtctcaaac 721 gaccacagcg gaatcaacaa catttaccgg ctaattgcgt agattgtgag aacacaagaa 781 aatatgtaaa aaactccata gaattgtttc atcacttttc gaatccatca ttaaaccgtc 841 gctgggtgtg tgacaaatgt gacaccgata ataattcggt gacctggcat tgtttgatct 901 gcgataccgt tagttatctg gcgcccatat acaaggaaac gctgagtcat cgtaaactgc 961 cgcattacaa acagtcgagc tttgatggag gacaacatct ggatggaaaa ttgaagcgta 1021 atgacaagaa aataccctac tttcgtagaa cgcaaagttt gacatcggat aagtcatttt 1081 catatcgcag ttgccacata tgttttgtca ataatcgcaa agatattttc aacttgccag 1141 aaacctttat gcataaatat tctgcaagtg gagctcaaag ctcagatgag atatttggaa 1201 gaacatttga acaactgcca ccgttgcaac aacaatcgtc aagacgtcta aatcaattgg 1261 tcggtggtaa ggatacaatt tgtcgcaaac ataatcaaag ccagaatcag agtcagcagc 1321 atcagcacca acaccaccag cagcaccgag agccaaagtg taactttacc ataaccacat 1381 tgtcgcgggc gaataaagtc gacgatgcca gcaagaaatt taccattcca cgcaatagtg 1441 tgttcattgc agtcaacgat tcctgggcca ctccagaatt agattcaaca acgacgacga 1501 catcgtctac ccatcaagcg gccggtgttt cgggtggagc aagttgtggt ggcgtaggcg 1561 gcgtgatttc aagcaataat gccattggaa gtgatgaaaa gaggagatat cgtcaaccgg 1621 tgataaaggc agaatcattg ccgcaatatt gtgatagaac cgatagcatc gagcgaaaat 1681 ccctgcaaag acgtggttca aatgaaactg gtacttctgg tatttgctat gccacattta 1741 gcaaaggcat gtataagcca cagcatattt atgaaaatga ttgcattatc caaagaccct 1801 caatcgttag ccgtgcagtt ggggctgcat ctgatgagac tggcgataac gctactgccg 1861 caaatgcttc aaatcacccc ctttatgccg tggttaataa gaataacaaa tcaaaaaata 1921 aacaaacaaa cgaattacaa gtgatatcgg cagtgcaaca gcagccactg cagcaacaca 1981 taaatgatgg tcaaacaaag tcagctacgg caagcgctac agcagcagct ttggcaacgc 2041 atttattaaa caacaataac catcacaaca acaatgtcaa tgttaatgct aaattaagag 2101 ccaacagcag tcatccttct tccacttcga cgtccgcttg cagtacagca gacatcatgg 2161 gcaatatgtt gcccacggac acaaccatat tggatgcaac tggtggtggt agcagcagtg 2221 gaggtctggc cgttggtggt ctacggctcg accatcaaca tcatcataat cagggggcag 2281 ttaccaagac aacgtcgcac acgcatgcgt ctaataaata tgatccaatc ttaacaacga 2341 caattaccgc agatgccctg aagagcgata gcaatgccga acattccata tatgccaaag 2401 tatggaaggg tccccgtaag acgagtgaat ctaaaatatc aattgtccca gcagcctcca 2461 atcgaggtgg agataacatt ggcacaccca cagtggcagc tacacgtatt gacaataatt 2521 caattccaaa ttcacgacga atgtggactt gtacaaactg ttcctatgca tacaatcgta 2581 tgtggactga acgttgcgaa atctgtgaaa atctgcgtac tcagccatct ttaacacagc 2641 ccaatttaat aactgttacc aaaactgata ttactacgac tgataactta ccaagatcac 2701 atgatccagc tacaacatgg acgtgcaaga aatgcaccct agtcaattca actaaagacc 2761 atgcttgtgt cgtctgtggt ggttcgaaat tgaagagtat atcttctatc gaagatatga 2821 cactgcgaaa aggagagttt tggacgtgtt cccaatgcac tctgaagaat tcgttggcga 2881 ctggggtatg tagcgcatgc aaggctgttc gaacactgcc aatcgaaagc gatagagaac 2941 gtatggttgg tccgataccc gaagagctgc atcgtaatgt caaccacatt ggtggtaata 3001 tgttgatttc ggatgcaata tcacctggaa tgggaacgca caggccatcg gccgccaatg 3061 ttactccaac ttcaaatcta cagcttccgc ctatacgcac ttcgcgaagt ccctcgccaa 3121 gacaaaatcg ttcctcttct ggagccatac ctaaacgaca cagtaccggt gggtcggggg 3181 gcattttacc acgtaataca accgtatcga cttcctccag cagcaatgta ataagcagca 3241 ccagccaaca gttgttacag catcgtcaca gctcgagtgg cagtgcaggc agcggcataa 3301 aaacgtggca atgtcctgcc tgtacatacg acaactcctc tgcgtctgtg gtctgcgaaa 3361 tgtgttccag ccccaggggt ctggtgaata atataacgaa aatggctttg ctacacaaaa 3421 cgaatagaca ttcagctgaa ctgcagcaag agagcaaact gatggagaac ctgcggcgaa 3481 tagaggaggc agaggctctt cacaaatggg agaacattat acagtactgt cgtgacaata 3541 acgaattgtt tgttgatgac tcttttcctc cggcaccgaa aagcctctat tacaatccgc 3601 aacagagcat ggcggaaggc aatccagttg ttcagtggag aagacctcac gaaattaatt 3661 gcgatggggg agcattcccc ccttgggcgg tctttcgtac accattacca tctgatatat 3721 gccagggagt gctgggcaat tgttggcttc taagcgcatt ggctgttcta gctgaacgtg 3781 aggatcttgt gcgtgaagtt ttggtcacga aagagatttg cccccagggg gcttatcaag 3841 tgcgtttgtg caaagatggc aagtggacga cggtgttagt ggatgatctg ttgccttgcg 3901 acaagcgagg tcatttagtc tactcccaag ccaagcgtaa acaattgtgg gttccgttaa 3961 tagaaaaggc agttgccaag attcacggct gctacgaggc gttggtgtct gggcgcgcca 4021 ttgaaggttt ggccaccttg accggagcac catgtgagag cataccattg caggccagct 4081 ctctgccaat gcctagcgag gatgaattgg ataaagatct catatgggct caactgctaa 4141 gttctcgagg cgtgagattt ctcatgggtg ccagttgtgg tggtggaaat atgaaggtcg 4201 acgaagacga gtatcatcga aaaggtctta ggccacgtca tgcttactct gtgctcgatg 4261 taaaagacat acatggacat cgtttgctaa agctgcgaaa cccatggggc catttttctt 4321 ggcgaggaga ttggtcagat gactctgacc tttggactga agaactgcgg gaggctttga 4381 tgccacatgg agcctccgaa ggtgtttttt ggatatcatt cgaagacgtt ttaaacttct 4441 ttgattgcat cgacatctgt aaagtacgat cgggttggaa cgaagttcga ctgaagggta 4501 cactacagcc cttgtgttca atgtcctgcg tcctccttac ggtgctagag ccaaccgaag 4561 ccgagttcac attgttccag gagggacaac gcaattccga aaagtcgcag cgctcacaac 4621 tggatttgtg tgtggtaatt tttcgcactc gttccccagc atcgcctgaa ataggacggt 4681 tggtggagca cagtaaacgt caagttcgtg gctttgtggg ctgccataaa atgttagagc 4741 gtgatatcta tttgctggtt tgcttagcat ttaaccactg gcacaccggc atggaggatc 4801 cccatcagta tcctcgctgt atcttggcta tacatagctc gaaacgtttg cttgtagaac 4861 aaataactcc tccgcaacat ttattagctg atgccatcat aagtttaact ctaaccaaag 4921 gacaacggca tgagggcaga gagggcatga ctgcttatta tctaacaaag ggttgggcag 4981 gcttagttgt tatggtggag aaccgccacg aaaataaatg gatacatgtc aaatgtgatt 5041 gtcaagagag ctacaatgtt gtctccacaa gaggggaatt aaaaaccgtt gattcggtac 5101 cgccacttca aagacaagtc ataattgttt tgacacaatt ggaaggtagt ggaggattta 5161 gcattgccca ccgtcttaca catcgtttgg caaattccag aggtcttcac gattggggac 5221 ccccgggggc aacacattgt ccaccaattg aaaatgttca cggtttacat gcgccgcgtt 5281 taatcacata agcaaaacga atgaacaaat gaacaaattt cactatttct agtcgtcaaa 5341 caaacacatc ccccaatctc atcccgcccc ctatgttccc ccattcatat tcacatacat 5401 tttacaacaa tataagcaaa aaccatatga accgaaaaac agcaaaggca accaaaaaga 5461 tcaaccaacc aaccaagcac ttggtgaaga aagaaattag tctgtatgta tttgattata 5521 cttattatta tatatgtagg taacattacg ctctatgaca tgataatgat tattattatt 5581 taaatgtgtt tttagtttat taattaataa aaaaaaaacc aaaacaaaac caacaatgta 5641 agtacattat gttaagtgca