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LOCUS XM_013247207 3874 bp mRNA linear INV 02-SEP-2023 (LOC106083904), transcript variant X4, mRNA. ACCESSION XM_013247207 VERSION XM_013247207.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013247207.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3874 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..3874 /gene="LOC106083904" /note="alpha-actinin, sarcomeric; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:106083904" CDS 162..2852 /gene="LOC106083904" /codon_start=1 /product="alpha-actinin, sarcomeric isoform X3" /protein_id="XP_013102661.1" /db_xref="GeneID:106083904" /translation="MMMENGLSMEDYGDNYMEQEEEWEREGLLDPAWEKQQKKTFTAW CNSHLRKAGTGIENIEDDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALD FIASKGVQLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLLLWCQR KTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPDLIDYSKLSKDNPLENLNTAFDVAEK YLDIPRMLDPDDLQNTALPDERAVMTYVSSYYHCFSGAQKAETAANRICKVLKVNQEN ERLMEEYERLASDLLEWIRRTMPWLNSRQADNSLAGVQKKLEEYRTYRRKHKPPRVEQ KAKLETNFNTLQTKLRLSNRPAYLPTEGKTVADISNAWKGLELSEKAFEEWLLAETMR LERLEHLAQKFKIKADAHEEWTRGKEEMLQSQDFRQCKLNELKALKKKHEAFESDLAA HQDRVEQIAAIAQELNSLEYHDCVSVNARCQRICDQWDRLGALTQRRRTALDEAERIL EKIDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIQAHDQFKATLGEAD KEFNLVVNLVREVESIVKQYQIPGGLENPYTNVTAHDMTRKWSDVRQLVPQRDQTLAN ELRKQQNNEMLRRQFAEKANVVGPWIERQMDAVTAIGMGLQGSLEDQLHRLKEYEQAV YAYKPNIEELEKIHQAVQESMIFENRYTNYTMETLRVGWEQLLTSINRNINEVENQIL TRDSKGISQDQLNEFRSSFNHFDKKRAGRLTPEEFKSCLVSLGYSIGKDRQGEMDFQR ILAVVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKPYILPDELRREL PPDQAEYCIQRMPPYKGPNGIPGALDYMSFSTALYGETDL" misc_feature 255..569 /gene="LOC106083904" /note="first calponin homology (CH) domain found in the alpha-actinin family; Region: CH_ACTN_rpt1; cd21214" /db_xref="CDD:409063" misc_feature order(270..272,282..284,414..416,426..434,441..446, 489..515,537..539,543..548,555..560,564..569) /gene="LOC106083904" /note="actin binding site [polypeptide binding]; other site" /db_xref="CDD:409063" misc_feature order(315..317,321..323,393..401) /gene="LOC106083904" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:409063" misc_feature 579..923 /gene="LOC106083904" /note="second calponin homology (CH) domain found in the alpha-actinin family; Region: CH_ACTN_rpt2; cd21216" /db_xref="CDD:409065" misc_feature order(609..611,621..623,762..770,777..782,825..851, 882..884,888..893,900..905,909..914) /gene="LOC106083904" /note="putative actin binding site [polypeptide binding]; other site" /db_xref="CDD:409065" misc_feature 1002..1673 /gene="LOC106083904" /note="Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; Region: SPEC; cd00176" /db_xref="CDD:238103" misc_feature 1356..2039 /gene="LOC106083904" /note="Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; Region: SPEC; cd00176" /db_xref="CDD:238103" misc_feature 1356..1373 /gene="LOC106083904" /note="linker region [active]" /db_xref="CDD:238103" misc_feature 1671..1688 /gene="LOC106083904" /note="linker region [active]" /db_xref="CDD:238103" misc_feature 1710..2378 /gene="LOC106083904" /note="Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; Region: SPEC; cd00176" /db_xref="CDD:238103" misc_feature 2034..2051 /gene="LOC106083904" /note="linker region [active]" /db_xref="CDD:238103" misc_feature 2400..>2720 /gene="LOC106083904" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" misc_feature 2637..2837 /gene="LOC106083904" /note="Ca2+ insensitive EF hand; Region: EFhand_Ca_insen; pfam08726" /db_xref="CDD:430177" polyA_site 3874 /gene="LOC106083904" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cagaaaattt tcttacgagt tcgaacgcac gattatcgtt ggcgcaacat tagttttgag 61 ttggctacca acgcgagcgg gtcattctct ttgcaagcga cacacattta gaatcttaag 121 gatacttcga acgaattaaa agaaaataac acgaattcaa aatgatgatg gagaacggtc 181 tctccatgga ggattatggg gataactaca tggaacaaga agaagagtgg gagcgcgagg 241 gacttttgga tccagcctgg gagaaacaac aaaagaagac atttacagca tggtgcaaca 301 gtcatttgcg caaagccggc actggcatcg aaaatatcga agatgatttc cgcaatggtt 361 tgaaattgat gttgttgcta gaagtaatct ctggtgaaac tttgcccaag cccgatcgcg 421 gtaaaatgcg tttccacaaa attgccaatg tgaataaggc attggatttc attgcctcca 481 agggtgtgca attggtatcg attggtgctg aggaaattgt cgatggcaat ttgaaaatga 541 cccttggtat gatttggacc attatcttga gatttgccat tcaagatatc tctgttgaag 601 agatgaccgc caaggagggc ttgttgttgt ggtgccaacg caaaactgcc ccctataaga 661 atgtcaatgt acagaacttc catttgtcat tcaaggacgg tttagccttc tgcgctttga 721 tccatcgcca caggcccgac ttgattgatt attccaaact ctccaaagac aatccattgg 781 aaaatctcaa cactgccttc gatgttgctg agaagtatct tgatattccc agaatgttgg 841 atcctgatga cctacagaat accgcattgc cagatgaaag ggcagtcatg acatacgtat 901 catcctatta tcattgcttc agtggtgccc aaaaggcgga aactgctgct aaccgcatct 961 gtaaggtttt gaaggttaac caagagaatg aacgactcat ggaagagtat gaacgtcttg 1021 ccagcgatct tttggaatgg attcgtcgca ccatgccctg gttgaactcc cgccaagccg 1081 ataactcctt ggctggtgtg caaaagaaat tggaggaata ccgcacctat cgtcgcaagc 1141 ataagccccc acgtgttgaa caaaaggcta agctcgaaac taacttcaac acattgcaaa 1201 ctaaattgcg tctctccaat cgccccgcct acttgcccac cgaaggcaag actgtggccg 1261 acatctccaa tgcctggaag ggtttggaac tttcggagaa ggccttcgaa gaatggcttt 1321 tggctgagac catgcgtttg gaacgcttgg aacatttggc ccaaaagttc aagatcaagg 1381 ccgatgccca cgaagaatgg acccgcggca aggaggaaat gttgcaatcc caagatttcc 1441 gtcaatgcaa gttgaacgaa ttgaaggctt tgaagaagaa gcacgaagcc ttcgaatccg 1501 atttggccgc ccaccaggat cgtgttgagc aaattgctgc tattgctcaa gaattgaact 1561 ccttggaata tcacgattgc gtttcggtta acgcccgctg ccaacgcatc tgtgaccaat 1621 gggatcgttt gggtgccttg acccaacgtc gccgcaccgc tttggatgaa gccgaacgca 1681 ttttggagaa aatcgacatc ttgcacttgg aattcgccaa gcgtgctgct cccttcaaca 1741 actggttgga tggtacacgc gaagatttgg ttgacatgtt cattgttcac accatggagg 1801 aaatccaagg tctcattcag gctcatgatc aattcaaggc cactttgggt gaagccgata 1861 aggaattcaa cttggttgtc aacttggtgc gtgaagtcga atccattgtt aagcaatacc 1921 aaattcccgg tggtttggag aatccctaca ccaatgtcac tgctcacgat atgactcgca 1981 agtggagcga tgtacgccaa ttggtgccac aacgtgacca gaccttggcc aatgaattgc 2041 gcaaacaaca gaacaacgaa atgttgcgca gacaatttgc cgaaaaggcc aatgttgtgg 2101 gtccctggat tgagcgtcaa atggatgctg tgaccgccat tggcatgggt cttcaaggct 2161 ctttggaaga ccaattgcac cgcctcaagg aatacgaaca ggctgtgtat gcctacaaac 2221 ccaatattga ggaattggag aagatccatc aagctgtgca agaatccatg atctttgaga 2281 accgttacac caactacaca atggaaactt tgcgtgtggg ctgggaacaa ttgctgacat 2341 cgatcaaccg caacatcaac gaagtcgaaa accaaatcct cacccgtgac tcaaagggca 2401 ttagccaaga ccaattgaat gaattccgct cgagcttcaa tcacttcgac aagaagcgcg 2461 ctggtcgctt gacccccgag gaattcaaat cctgcctggt gtcattgggc tattcgattg 2521 gcaaggatcg tcaaggtgaa atggacttcc aacgtatctt ggctgtggtg gatcccaact 2581 cgactggtta tgtgcacttt gatgccttct tagatttcat gacacgcgaa agcacagaca 2641 ccgatactgc cgaacaggtt atcgattcct tcagaatttt ggcaggtgat aagccataca 2701 tcttgcccga tgaattgcgt cgcgaattgc ccccagatca agctgaatac tgtatccaac 2761 gcatgccacc ctacaagggc cccaatggta ttcccggcgc ccttgactac atgtccttca 2821 gtacagctct gtatggtgaa accgatttgt aaatcaaatg agctcatgtg ccacaaattg 2881 ttagttttac gaccacaccc cccactacaa caaaaacaac aacaactcgt ctattctaaa 2941 tcattttaag taaccaaaag aaaataaaag aaacaaaaat tgaagagtga gagattatca 3001 accacctaga tcggctaaat aaaatctacc accaaaactc catttaaaaa aaaaatacgt 3061 tttaagttaa tcacaacaac aattttaaat caattgacaa aattttgatc attcagcagt 3121 tgcatactaa cctgaccaac cgccagctac ccgcccgcaa acaaatcgag aaaagactaa 3181 cccaccacac acactaccac tacagccccc cgattaacaa gcagaacact catcaaagca 3241 acactagaca aaaacatgct cacacctaaa cacatactca ctcacgcttt tacaaaaacc 3301 aaactcaaag agagacagag agagagagag aaagaatttt aaatctctca aaagctaatc 3361 accaaacccc caccgtccga aaatctcgaa aaattagaca tatcaaatac atgatgatga 3421 caggagatgc caaaaaagag agagtttttg atatagacaa agaaggagag agaaaggaga 3481 gaactacaac acatgctgca aagaaaagat gttcaagcgc tacacgtggt gatagaaatt 3541 caacgctaga agggaaaaag ctggacggaa atgaaggcca aatgtttggg gtcggctgta 3601 tgccttgact cgccgcatta accaactaat ctaaatcgaa tcgccatcgt tatcgaaatc 3661 tcaagcaaga accaagcata cggccacctt caactcccac aacaccaata accttcaaca 3721 acaaaagaaa atacgaagaa ttattagaat ttttttcctc atttaaagaa atcacactaa 3781 aaacgtctta tatttttatt gtcacagttc atctgagatg aatggattgt aataagagta 3841 taataatgaa taaaaacata tttttgatat ttta