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LOCUS XM_013247205 3872 bp mRNA linear INV 02-SEP-2023 (LOC106083904), transcript variant X3, mRNA. ACCESSION XM_013247205 VERSION XM_013247205.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013247205.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3872 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..3872 /gene="LOC106083904" /note="alpha-actinin, sarcomeric; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins" /db_xref="GeneID:106083904" CDS 160..2850 /gene="LOC106083904" /codon_start=1 /product="alpha-actinin, sarcomeric isoform X2" /protein_id="XP_013102659.1" /db_xref="GeneID:106083904" /translation="MMMENGLSMEDYGDNYMEQEEEWEREGLLDPAWEKQQKKTFTAW CNSHLRKAGTGIENIEDDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALD FIASKGVQLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLLLWCQR KTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPDLIDYSKLSKDNPLENLNTAFDVAEK YLDIPRMLDPDDLINTPKPDERAIMTYVSCYYHAFQGAQQAETAANRICKVLKVNQEN ERLMEEYERLASDLLEWIRRTMPWLNSRQADNSLAGVQKKLEEYRTYRRKHKPPRVEQ KAKLETNFNTLQTKLRLSNRPAYLPTEGKTVADISNAWKGLELSEKAFEEWLLAETMR LERLEHLAQKFKIKADAHEEWTRGKEEMLQSQDFRQCKLNELKALKKKHEAFESDLAA HQDRVEQIAAIAQELNSLEYHDCVSVNARCQRICDQWDRLGALTQRRRTALDEAERIL EKIDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIQAHDQFKATLGEAD KEFNLVVNLVREVESIVKQYQIPGGLENPYTNVTAHDMTRKWSDVRQLVPQRDQTLAN ELRKQQNNEMLRRQFAEKANVVGPWIERQMDAVTAIGMGLQGSLEDQLHRLKEYEQAV YAYKPNIEELEKIHQAVQESMIFENRYTNYTMETLRVGWEQLLTSINRNINEVENQIL TRDSKGISQDQLNEFRSSFNHFDKKRAGRLTPEEFKSCLVSLGYSIGKDRQGEMDFQR ILAVVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKPYILPDELRREL PPDQAEYCIQRMPPYKGPNGIPGALDYMSFSTALYGETDL" misc_feature 253..567 /gene="LOC106083904" /note="first calponin homology (CH) domain found in the alpha-actinin family; Region: CH_ACTN_rpt1; cd21214" /db_xref="CDD:409063" misc_feature order(268..270,280..282,412..414,424..432,439..444, 487..513,535..537,541..546,553..558,562..567) /gene="LOC106083904" /note="actin binding site [polypeptide binding]; other site" /db_xref="CDD:409063" misc_feature order(313..315,319..321,391..399) /gene="LOC106083904" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:409063" misc_feature 577..918 /gene="LOC106083904" /note="second calponin homology (CH) domain found in the alpha-actinin family; Region: CH_ACTN_rpt2; cd21216" /db_xref="CDD:409065" misc_feature order(607..609,619..621,760..768,775..780,823..849, 880..882,886..891,898..903,907..912) /gene="LOC106083904" /note="putative actin binding site [polypeptide binding]; other site" /db_xref="CDD:409065" misc_feature 1000..1671 /gene="LOC106083904" /note="Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; Region: SPEC; cd00176" /db_xref="CDD:238103" misc_feature 1354..2037 /gene="LOC106083904" /note="Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; Region: SPEC; cd00176" /db_xref="CDD:238103" misc_feature 1354..1371 /gene="LOC106083904" /note="linker region [active]" /db_xref="CDD:238103" misc_feature 1669..1686 /gene="LOC106083904" /note="linker region [active]" /db_xref="CDD:238103" misc_feature 1708..2376 /gene="LOC106083904" /note="Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; Region: SPEC; cd00176" /db_xref="CDD:238103" misc_feature 2032..2049 /gene="LOC106083904" /note="linker region [active]" /db_xref="CDD:238103" misc_feature 2398..>2718 /gene="LOC106083904" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" misc_feature 2635..2835 /gene="LOC106083904" /note="Ca2+ insensitive EF hand; Region: EFhand_Ca_insen; pfam08726" /db_xref="CDD:430177" polyA_site 3872 /gene="LOC106083904" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gaaaattttc ttacgagttc gaacgcacga ttatcgttgg cgcaacatta gttttgagtt 61 ggctaccaac gcgagcgggt cattctcttt gcaagcgaca cacatttaga atcttaagga 121 tacttcgaac gaattaaaag aaaataacac gaattcaaaa tgatgatgga gaacggtctc 181 tccatggagg attatgggga taactacatg gaacaagaag aagagtggga gcgcgaggga 241 cttttggatc cagcctggga gaaacaacaa aagaagacat ttacagcatg gtgcaacagt 301 catttgcgca aagccggcac tggcatcgaa aatatcgaag atgatttccg caatggtttg 361 aaattgatgt tgttgctaga agtaatctct ggtgaaactt tgcccaagcc cgatcgcggt 421 aaaatgcgtt tccacaaaat tgccaatgtg aataaggcat tggatttcat tgcctccaag 481 ggtgtgcaat tggtatcgat tggtgctgag gaaattgtcg atggcaattt gaaaatgacc 541 cttggtatga tttggaccat tatcttgaga tttgccattc aagatatctc tgttgaagag 601 atgaccgcca aggagggctt gttgttgtgg tgccaacgca aaactgcccc ctataagaat 661 gtcaatgtac agaacttcca tttgtcattc aaggacggtt tagccttctg cgctttgatc 721 catcgccaca ggcccgactt gattgattat tccaaactct ccaaagacaa tccattggaa 781 aatctcaaca ctgccttcga tgttgctgag aagtatcttg atattcccag aatgttggat 841 cctgatgatt tgatcaacac tcccaagccg gatgaacgtg ccatcatgac ctatgtgtct 901 tgctactacc acgccttcca aggagcccaa caggcggaaa ctgctgctaa ccgcatctgt 961 aaggttttga aggttaacca agagaatgaa cgactcatgg aagagtatga acgtcttgcc 1021 agcgatcttt tggaatggat tcgtcgcacc atgccctggt tgaactcccg ccaagccgat 1081 aactccttgg ctggtgtgca aaagaaattg gaggaatacc gcacctatcg tcgcaagcat 1141 aagcccccac gtgttgaaca aaaggctaag ctcgaaacta acttcaacac attgcaaact 1201 aaattgcgtc tctccaatcg ccccgcctac ttgcccaccg aaggcaagac tgtggccgac 1261 atctccaatg cctggaaggg tttggaactt tcggagaagg ccttcgaaga atggcttttg 1321 gctgagacca tgcgtttgga acgcttggaa catttggccc aaaagttcaa gatcaaggcc 1381 gatgcccacg aagaatggac ccgcggcaag gaggaaatgt tgcaatccca agatttccgt 1441 caatgcaagt tgaacgaatt gaaggctttg aagaagaagc acgaagcctt cgaatccgat 1501 ttggccgccc accaggatcg tgttgagcaa attgctgcta ttgctcaaga attgaactcc 1561 ttggaatatc acgattgcgt ttcggttaac gcccgctgcc aacgcatctg tgaccaatgg 1621 gatcgtttgg gtgccttgac ccaacgtcgc cgcaccgctt tggatgaagc cgaacgcatt 1681 ttggagaaaa tcgacatctt gcacttggaa ttcgccaagc gtgctgctcc cttcaacaac 1741 tggttggatg gtacacgcga agatttggtt gacatgttca ttgttcacac catggaggaa 1801 atccaaggtc tcattcaggc tcatgatcaa ttcaaggcca ctttgggtga agccgataag 1861 gaattcaact tggttgtcaa cttggtgcgt gaagtcgaat ccattgttaa gcaataccaa 1921 attcccggtg gtttggagaa tccctacacc aatgtcactg ctcacgatat gactcgcaag 1981 tggagcgatg tacgccaatt ggtgccacaa cgtgaccaga ccttggccaa tgaattgcgc 2041 aaacaacaga acaacgaaat gttgcgcaga caatttgccg aaaaggccaa tgttgtgggt 2101 ccctggattg agcgtcaaat ggatgctgtg accgccattg gcatgggtct tcaaggctct 2161 ttggaagacc aattgcaccg cctcaaggaa tacgaacagg ctgtgtatgc ctacaaaccc 2221 aatattgagg aattggagaa gatccatcaa gctgtgcaag aatccatgat ctttgagaac 2281 cgttacacca actacacaat ggaaactttg cgtgtgggct gggaacaatt gctgacatcg 2341 atcaaccgca acatcaacga agtcgaaaac caaatcctca cccgtgactc aaagggcatt 2401 agccaagacc aattgaatga attccgctcg agcttcaatc acttcgacaa gaagcgcgct 2461 ggtcgcttga cccccgagga attcaaatcc tgcctggtgt cattgggcta ttcgattggc 2521 aaggatcgtc aaggtgaaat ggacttccaa cgtatcttgg ctgtggtgga tcccaactcg 2581 actggttatg tgcactttga tgccttctta gatttcatga cacgcgaaag cacagacacc 2641 gatactgccg aacaggttat cgattccttc agaattttgg caggtgataa gccatacatc 2701 ttgcccgatg aattgcgtcg cgaattgccc ccagatcaag ctgaatactg tatccaacgc 2761 atgccaccct acaagggccc caatggtatt cccggcgccc ttgactacat gtccttcagt 2821 acagctctgt atggtgaaac cgatttgtaa atcaaatgag ctcatgtgcc acaaattgtt 2881 agttttacga ccacaccccc cactacaaca aaaacaacaa caactcgtct attctaaatc 2941 attttaagta accaaaagaa aataaaagaa acaaaaattg aagagtgaga gattatcaac 3001 cacctagatc ggctaaataa aatctaccac caaaactcca tttaaaaaaa aaatacgttt 3061 taagttaatc acaacaacaa ttttaaatca attgacaaaa ttttgatcat tcagcagttg 3121 catactaacc tgaccaaccg ccagctaccc gcccgcaaac aaatcgagaa aagactaacc 3181 caccacacac actaccacta cagccccccg attaacaagc agaacactca tcaaagcaac 3241 actagacaaa aacatgctca cacctaaaca catactcact cacgctttta caaaaaccaa 3301 actcaaagag agacagagag agagagagaa agaattttaa atctctcaaa agctaatcac 3361 caaaccccca ccgtccgaaa atctcgaaaa attagacata tcaaatacat gatgatgaca 3421 ggagatgcca aaaaagagag agtttttgat atagacaaag aaggagagag aaaggagaga 3481 actacaacac atgctgcaaa gaaaagatgt tcaagcgcta cacgtggtga tagaaattca 3541 acgctagaag ggaaaaagct ggacggaaat gaaggccaaa tgtttggggt cggctgtatg 3601 ccttgactcg ccgcattaac caactaatct aaatcgaatc gccatcgtta tcgaaatctc 3661 aagcaagaac caagcatacg gccaccttca actcccacaa caccaataac cttcaacaac 3721 aaaagaaaat acgaagaatt attagaattt ttttcctcat ttaaagaaat cacactaaaa 3781 acgtcttata tttttattgt cacagttcat ctgagatgaa tggattgtaa taagagtata 3841 ataatgaata aaaacatatt tttgatattt ta