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LOCUS XM_013247204 3891 bp mRNA linear INV 02-SEP-2023 (LOC106083904), transcript variant X2, mRNA. ACCESSION XM_013247204 VERSION XM_013247204.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013247204.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3891 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..3891 /gene="LOC106083904" /note="alpha-actinin, sarcomeric; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins" /db_xref="GeneID:106083904" CDS 113..2869 /gene="LOC106083904" /codon_start=1 /product="alpha-actinin, sarcomeric isoform X1" /protein_id="XP_013102658.1" /db_xref="GeneID:106083904" /translation="MMMENGLSMEDYGDNYMEQEEEWEREGLLDPAWEKQQKKTFTAW CNSHLRKAGTGIENIEDDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALD FIASKGVQLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLLLWCQR KTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPDLIDYSKLSKDNPLENLNTAFDVAEK YLDIPRMLDPDDLINTPKPDERAIMTYVSCYYHAFQGAQQVGNMTHVPEPTRQYTYVP NNYNAETAANRICKVLKVNQENERLMEEYERLASDLLEWIRRTMPWLNSRQADNSLAG VQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAYLPTEGKTVADISN AWKGLELSEKAFEEWLLAETMRLERLEHLAQKFKIKADAHEEWTRGKEEMLQSQDFRQ CKLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNSLEYHDCVSVNARCQRICDQ WDRLGALTQRRRTALDEAERILEKIDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHT MEEIQGLIQAHDQFKATLGEADKEFNLVVNLVREVESIVKQYQIPGGLENPYTNVTAH DMTRKWSDVRQLVPQRDQTLANELRKQQNNEMLRRQFAEKANVVGPWIERQMDAVTAI GMGLQGSLEDQLHRLKEYEQAVYAYKPNIEELEKIHQAVQESMIFENRYTNYTMETLR VGWEQLLTSINRNINEVENQILTRDSKGISQDQLNEFRSSFNHFDKKRAGRLTPEEFK SCLVSLGYSIGKDRQGEMDFQRILAVVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVI DSFRILAGDKPYILPDELRRELPPDQAEYCIQRMPPYKGPNGIPGALDYMSFSTALYG ETDL" misc_feature 206..520 /gene="LOC106083904" /note="first calponin homology (CH) domain found in the alpha-actinin family; Region: CH_ACTN_rpt1; cd21214" /db_xref="CDD:409063" misc_feature order(221..223,233..235,365..367,377..385,392..397, 440..466,488..490,494..499,506..511,515..520) /gene="LOC106083904" /note="actin binding site [polypeptide binding]; other site" /db_xref="CDD:409063" misc_feature order(266..268,272..274,344..352) /gene="LOC106083904" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:409063" misc_feature 530..871 /gene="LOC106083904" /note="second calponin homology (CH) domain found in the alpha-actinin family; Region: CH_ACTN_rpt2; cd21216" /db_xref="CDD:409065" misc_feature order(560..562,572..574,713..721,728..733,776..802, 833..835,839..844,851..856,860..865) /gene="LOC106083904" /note="putative actin binding site [polypeptide binding]; other site" /db_xref="CDD:409065" misc_feature 1019..1690 /gene="LOC106083904" /note="Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; Region: SPEC; cd00176" /db_xref="CDD:238103" misc_feature 1373..2056 /gene="LOC106083904" /note="Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; Region: SPEC; cd00176" /db_xref="CDD:238103" misc_feature 1373..1390 /gene="LOC106083904" /note="linker region [active]" /db_xref="CDD:238103" misc_feature 1688..1705 /gene="LOC106083904" /note="linker region [active]" /db_xref="CDD:238103" misc_feature 1727..2395 /gene="LOC106083904" /note="Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; Region: SPEC; cd00176" /db_xref="CDD:238103" misc_feature 2051..2068 /gene="LOC106083904" /note="linker region [active]" /db_xref="CDD:238103" misc_feature 2417..>2737 /gene="LOC106083904" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" misc_feature 2654..2854 /gene="LOC106083904" /note="Ca2+ insensitive EF hand; Region: EFhand_Ca_insen; pfam08726" /db_xref="CDD:430177" polyA_site 3891 /gene="LOC106083904" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tttcttacga gttcgaacgc acgattatcg ttggcgcaac attagttttg agttggctac 61 caacgcgagc gggtcattct ctttgcaagc gacacactaa cacgaattca aaatgatgat 121 ggagaacggt ctctccatgg aggattatgg ggataactac atggaacaag aagaagagtg 181 ggagcgcgag ggacttttgg atccagcctg ggagaaacaa caaaagaaga catttacagc 241 atggtgcaac agtcatttgc gcaaagccgg cactggcatc gaaaatatcg aagatgattt 301 ccgcaatggt ttgaaattga tgttgttgct agaagtaatc tctggtgaaa ctttgcccaa 361 gcccgatcgc ggtaaaatgc gtttccacaa aattgccaat gtgaataagg cattggattt 421 cattgcctcc aagggtgtgc aattggtatc gattggtgct gaggaaattg tcgatggcaa 481 tttgaaaatg acccttggta tgatttggac cattatcttg agatttgcca ttcaagatat 541 ctctgttgaa gagatgaccg ccaaggaggg cttgttgttg tggtgccaac gcaaaactgc 601 cccctataag aatgtcaatg tacagaactt ccatttgtca ttcaaggacg gtttagcctt 661 ctgcgctttg atccatcgcc acaggcccga cttgattgat tattccaaac tctccaaaga 721 caatccattg gaaaatctca acactgcctt cgatgttgct gagaagtatc ttgatattcc 781 cagaatgttg gatcctgatg atttgatcaa cactcccaag ccggatgaac gtgccatcat 841 gacctatgtg tcttgctact accacgcctt ccaaggagcc caacaggttg gaaatatgac 901 gcatgttccc gaacccacaa gacaatacac ctacgtcccg aataattaca atgcggaaac 961 tgctgctaac cgcatctgta aggttttgaa ggttaaccaa gagaatgaac gactcatgga 1021 agagtatgaa cgtcttgcca gcgatctttt ggaatggatt cgtcgcacca tgccctggtt 1081 gaactcccgc caagccgata actccttggc tggtgtgcaa aagaaattgg aggaataccg 1141 cacctatcgt cgcaagcata agcccccacg tgttgaacaa aaggctaagc tcgaaactaa 1201 cttcaacaca ttgcaaacta aattgcgtct ctccaatcgc cccgcctact tgcccaccga 1261 aggcaagact gtggccgaca tctccaatgc ctggaagggt ttggaacttt cggagaaggc 1321 cttcgaagaa tggcttttgg ctgagaccat gcgtttggaa cgcttggaac atttggccca 1381 aaagttcaag atcaaggccg atgcccacga agaatggacc cgcggcaagg aggaaatgtt 1441 gcaatcccaa gatttccgtc aatgcaagtt gaacgaattg aaggctttga agaagaagca 1501 cgaagccttc gaatccgatt tggccgccca ccaggatcgt gttgagcaaa ttgctgctat 1561 tgctcaagaa ttgaactcct tggaatatca cgattgcgtt tcggttaacg cccgctgcca 1621 acgcatctgt gaccaatggg atcgtttggg tgccttgacc caacgtcgcc gcaccgcttt 1681 ggatgaagcc gaacgcattt tggagaaaat cgacatcttg cacttggaat tcgccaagcg 1741 tgctgctccc ttcaacaact ggttggatgg tacacgcgaa gatttggttg acatgttcat 1801 tgttcacacc atggaggaaa tccaaggtct cattcaggct catgatcaat tcaaggccac 1861 tttgggtgaa gccgataagg aattcaactt ggttgtcaac ttggtgcgtg aagtcgaatc 1921 cattgttaag caataccaaa ttcccggtgg tttggagaat ccctacacca atgtcactgc 1981 tcacgatatg actcgcaagt ggagcgatgt acgccaattg gtgccacaac gtgaccagac 2041 cttggccaat gaattgcgca aacaacagaa caacgaaatg ttgcgcagac aatttgccga 2101 aaaggccaat gttgtgggtc cctggattga gcgtcaaatg gatgctgtga ccgccattgg 2161 catgggtctt caaggctctt tggaagacca attgcaccgc ctcaaggaat acgaacaggc 2221 tgtgtatgcc tacaaaccca atattgagga attggagaag atccatcaag ctgtgcaaga 2281 atccatgatc tttgagaacc gttacaccaa ctacacaatg gaaactttgc gtgtgggctg 2341 ggaacaattg ctgacatcga tcaaccgcaa catcaacgaa gtcgaaaacc aaatcctcac 2401 ccgtgactca aagggcatta gccaagacca attgaatgaa ttccgctcga gcttcaatca 2461 cttcgacaag aagcgcgctg gtcgcttgac ccccgaggaa ttcaaatcct gcctggtgtc 2521 attgggctat tcgattggca aggatcgtca aggtgaaatg gacttccaac gtatcttggc 2581 tgtggtggat cccaactcga ctggttatgt gcactttgat gccttcttag atttcatgac 2641 acgcgaaagc acagacaccg atactgccga acaggttatc gattccttca gaattttggc 2701 aggtgataag ccatacatct tgcccgatga attgcgtcgc gaattgcccc cagatcaagc 2761 tgaatactgt atccaacgca tgccacccta caagggcccc aatggtattc ccggcgccct 2821 tgactacatg tccttcagta cagctctgta tggtgaaacc gatttgtaaa tcaaatgagc 2881 tcatgtgcca caaattgtta gttttacgac cacacccccc actacaacaa aaacaacaac 2941 aactcgtcta ttctaaatca ttttaagtaa ccaaaagaaa ataaaagaaa caaaaattga 3001 agagtgagag attatcaacc acctagatcg gctaaataaa atctaccacc aaaactccat 3061 ttaaaaaaaa aatacgtttt aagttaatca caacaacaat tttaaatcaa ttgacaaaat 3121 tttgatcatt cagcagttgc atactaacct gaccaaccgc cagctacccg cccgcaaaca 3181 aatcgagaaa agactaaccc accacacaca ctaccactac agccccccga ttaacaagca 3241 gaacactcat caaagcaaca ctagacaaaa acatgctcac acctaaacac atactcactc 3301 acgcttttac aaaaaccaaa ctcaaagaga gacagagaga gagagagaaa gaattttaaa 3361 tctctcaaaa gctaatcacc aaacccccac cgtccgaaaa tctcgaaaaa ttagacatat 3421 caaatacatg atgatgacag gagatgccaa aaaagagaga gtttttgata tagacaaaga 3481 aggagagaga aaggagagaa ctacaacaca tgctgcaaag aaaagatgtt caagcgctac 3541 acgtggtgat agaaattcaa cgctagaagg gaaaaagctg gacggaaatg aaggccaaat 3601 gtttggggtc ggctgtatgc cttgactcgc cgcattaacc aactaatcta aatcgaatcg 3661 ccatcgttat cgaaatctca agcaagaacc aagcatacgg ccaccttcaa ctcccacaac 3721 accaataacc ttcaacaaca aaagaaaata cgaagaatta ttagaatttt tttcctcatt 3781 taaagaaatc acactaaaaa cgtcttatat ttttattgtc acagttcatc tgagatgaat 3841 ggattgtaat aagagtataa taatgaataa aaacatattt ttgatatttt a