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LOCUS XM_013247201 4598 bp mRNA linear INV 02-SEP-2023 (LOC106083902), transcript variant X7, mRNA. ACCESSION XM_013247201 VERSION XM_013247201.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013247201.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4598 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4598 /gene="LOC106083902" /note="syntaxin-binding protein 5; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins" /db_xref="GeneID:106083902" CDS 711..4334 /gene="LOC106083902" /codon_start=1 /product="syntaxin-binding protein 5 isoform X4" /protein_id="XP_013102655.1" /db_xref="GeneID:106083902" /translation="MKKFTFRGVLDGFRQTVQPQTARQEQEIHETLRPDHFTIRKTFR HGFPYSPTTFAFDPVQRLLVIGDKSGSLRLLGRPGVDTHISHEGESACPVILSEFLVN DGKLVTVTADDTIHLWNIRQKVPQVIQSLKFQRERVTCIHLAVASKWLYVGTEKGNIH VVNIETFALSGYVINWNKAIELARANHPGAVIALCDNPIDANKLLIAYECGLLVLWDL KSKFAEIRWVSSDPVKSIAWHYEGKYFVSSHKDGSICSWPMKPTPKPQSLVYPHAKTS REGTVEKCNPIYKVDLKASQSGETFTIFSGGMPTEKGAKSNCITVMVGKTTTVLEMEH AVVDFITLCENPWTSETQEPYAIAVLLQYDLVLIDLLTPGFPCFESPYPMDLHESPVT YCTYLTDCPSDLVPAFYSVGRTTTSKKTGFSEREWPVSGGEWSPASCSYAEIVITGHQ DGTIKFWDSGAGTLQILYKLKTAKIFEKSKSLQTDSGVEHPLAIQLIHLCSVSRRLCV AGAMGQVILFKFRKVETTSDVLVLEIPILFENFDDIYGTSPECDFIPHQVQKTESSES DKTDNLLRVKTGAQRKPPGFQSQLVCLTTGPNKRIVQVTSLCISSTYGLMAYGTEYGL VIIDIIQKVCLLSIACPDLYGAHDPYSRTPKSPKRIETKDQDQSRSPSSDQINGATST APATSACSSGTKVAFSGSPNNHHLRYETNQSTDDSSLMGAASSSASGGVGKMSFTEQA STSSTSFDYAAEAQAGGASSGIYVGETEKLDGSFSRSRSSSMSSIDMSSAESVTCLAF IESYAKKNDMLSIVPTLWVGTSFGSILTLVVTMPEREVRKSQPVLVTINGGPVLRLKG SITSMSFLDAYGTIIPFSSEPWRDDSRDTKKERTPTKSSSRTSPTFTPTTANTISNTS GGNVSTSASSSGISGSVSTGLDTIADRQYIVIASEKQTKVFDIANQCCINRIQLSEMD FAVKAKTITMKDGTCLATYLSNGHLMVHSLPSLKLLLDTEFLPLMDLSFQTKCKQGIV DPMLSIWGQQIIVHEDITQISKIFCFSNKGHGLYMASPTEIQKFTISSEFCQFILDMM GSLYTVQEMPEQPKESFFKGLFGGGAKSLDREELFGEQSGKANRSVAKHIPGPTLEQL NQRASTAASEISRAHLLAMERGEKLNMLEERAERMANQAQDFSGTAHQLMLKYKDKKW YQL" misc_feature 864..974 /gene="LOC106083902" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature <873..1481 /gene="LOC106083902" /note="WD40 repeat [General function prediction only]; Region: WD40; COG2319" /db_xref="CDD:441893" misc_feature 993..1109 /gene="LOC106083902" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1122..1223 /gene="LOC106083902" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1407..1487 /gene="LOC106083902" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1554..1838 /gene="LOC106083902" /note="LLGL2; Region: LLGL; pfam08366" /db_xref="CDD:462446" misc_feature 4128..4310 /gene="LOC106083902" /note="SNARE domain of STXBP5, STXBP6 and related proteins; Region: R-SNARE_STXBP5_6; cd15873" /db_xref="CDD:277226" misc_feature order(4137..4139,4146..4151,4155..4157,4167..4172, 4176..4184,4188..4193,4197..4202,4209..4214,4218..4235, 4239..4256,4260..4277,4281..4289,4293..4298,4305..4307) /gene="LOC106083902" /note="heterotetramer interface [polypeptide binding]; other site" /db_xref="CDD:277226" misc_feature 4209..4211 /gene="LOC106083902" /note="zero layer; other site" /db_xref="CDD:277226" polyA_site 4598 /gene="LOC106083902" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgtttagttt tatattatcc tttgaagtct gcggatgtaa ttgtagaatt aaaaaagaag 61 aacaacgcac aaaacctata tctttaccta tacacaaaaa aacaagaaaa aaatttcact 121 ctcatacata catacctaca aacagaattg aaactgaaat tggaaaaaaa aaattcaaaa 181 aaagaaagaa agaaaaaaaa aacgcaaaaa ccccaaaata ttcgaattgt taactaagaa 241 aaaaaaatgt tctagagttt tgtattaaat cttctatgtg aaagagagaa aagaaaaaaa 301 ctatgacaat attttcatgt taaatattgc cccttttttg aatgtgaatg tgtgtggtgt 361 atgtgttttc ttttgcatgg tgcttacaga cagtggtttg aatttttgtg ctggtcataa 421 attcctgtag gaatcgccta aaacgtttcg cttgcgtcgg ggtgctacgc aaaaagattt 481 ttttcgttac atgtgtgaac acaacaaatg gagaataata aattacataa taacggagtg 541 aataatacca aattgaaaga tagtcacaaa aatagtaatt ggtactataa gaaaatttta 601 tgaattcaat gggcaaatgg attatttgta agattggctg ctgcaaactt actgtaaagc 661 tacaagtcct ctacaacaca aattccaaaa aatcattcta tgtgtaaaaa atgaaaaagt 721 tcacatttag aggcgttctt gatggatttc gacaaacggt tcagccgcaa actgcaagac 781 aagagcagga gattcatgag acccttagac cagaccattt tacgataaga aagacctttc 841 gtcatggatt tccctactct ccaacgacat ttgcatttga tccagtacaa aggctgttag 901 ttattggcga caaatcgggc agtctaagat tattgggccg tccgggtgtg gatactcata 961 tcagtcatga aggtgaatct gcatgtcccg taattctatc cgaattttta gtcaatgatg 1021 gaaaattggt aaccgtgacc gcagatgaca caatacattt gtggaatata cgccaaaaag 1081 tacctcaagt catacaaagc ttaaaatttc aacgagaaag agtaacatgc attcacttag 1141 cagtggcaag caaatggctg tatgttggca cagaaaaagg caacattcat gtggtcaaca 1201 tagagacatt tgcccttagc ggttacgtta taaactggaa caaagcaatt gaattggcta 1261 gagctaatca tcctggtgct gtgattgcat tatgtgataa tccaatagat gcaaataagt 1321 tgttgattgc atacgaatgt ggtttgcttg tcctttggga cttgaaatcc aaatttgccg 1381 agatcagatg ggtatcctcg gatccggtga agtcaatagc atggcattat gaaggaaaat 1441 attttgtatc ctcgcataaa gatggttcca tatgttcatg gcctatgaag ccgaccccaa 1501 aacctcaatc tctagtctat cctcatgcca aaacatcgag agagggtacg gttgaaaaat 1561 gcaatccaat ttacaaagtt gatttgaaag cttctcaatc tggagaaacc tttacgattt 1621 tttcgggtgg tatgccaaca gagaagggag caaaatccaa ttgtatcact gttatggtgg 1681 ggaagacaac caccgtctta gaaatggaac atgctgttgt tgattttata acactttgtg 1741 aaaacccttg gactagtgaa acccaagaac catatgcgat agcagtactt ctgcagtatg 1801 atttagtatt aatagactta cttacacccg gttttccatg tttcgaatcg ccttatccca 1861 tggacttaca cgaatcacct gttacatatt gcacttactt aactgattgc ccctcggatt 1921 tggttcctgc tttttactct gttggccgta ctacgacatc taaaaaaact ggtttctccg 1981 aaagagaatg gcctgtatca ggtggagaat ggtcaccagc gtcttgtagt tatgccgaaa 2041 tagtcataac aggtcatcaa gatggcacca taaaattttg ggattctggt gcaggcacat 2101 tacagatttt atataaactg aagacagcaa agatatttga aaaatccaaa tccctacaaa 2161 cagacagcgg tgtggaacat cctctggcaa ttcaattaat acatctttgc tctgtgtcca 2221 gacgtttatg tgttgcgggc gcaatgggcc aagtaatttt gtttaaattt cgcaaagttg 2281 aaaccacttc agacgttttg gttctggaga ttccaatact ctttgagaac tttgatgata 2341 tttatggtac tagtccggaa tgtgatttta taccacatca agttcaaaaa actgaatcaa 2401 gtgaatctga taagacggac aatttactac gagtcaaaac aggagcacaa cgaaagcctc 2461 cagggtttca gtcacagtta gtttgtttaa caactggccc aaataagaga attgttcaag 2521 tcacatcatt atgtatcagt tctacatatg gattaatggc ttatggcacg gaatatggac 2581 ttgttattat cgatattata cagaaagtct gcttattgag cattgcctgt cccgacttgt 2641 atggtgcgca cgatccctat tcgcgaacac ccaaaagtcc caaacgcatt gaaaccaagg 2701 atcaggatca gagtcgctca cccagctccg atcagatcaa tggagcaacc agtacagcac 2761 ctgcaaccag tgcatgcagc agcggtacca aagtagcttt ttcaggtagt cccaataatc 2821 atcatcttcg ctacgagacg aatcaatcga ccgacgattc atcattgatg ggcgccgcat 2881 catccagtgc tagcggcggt gtgggcaaaa tgtcctttac agaacaggca tccacgtcgt 2941 cgacgtcatt tgattatgcc gcagaagcac aagctggcgg agcatccagt ggcatctatg 3001 taggcgaaac agaaaaattg gatgggtcat tttcaagatc tagatcatcg tcgatgtcga 3061 gcatcgacat gtcttccgca gagtctgtaa cctgtttggc ttttattgaa agctatgcca 3121 aaaagaatga catgctctct atagtcccaa ctttgtgggt tggcacaagt tttggttcca 3181 tactaacgct ggtcgttacc atgcctgaac gtgaagtgcg caaatctcaa ccagttttgg 3241 tcacaattaa tggcggtcca gtattacgtc taaaaggatc aataacatca atgtcatttt 3301 tggatgctta tggcacaatt ataccatttt cctctgaacc atggcgagat gacagtaggg 3361 atacaaaaaa agaacgaacg ccaacaaaaa gtagcagtcg aacaagtcct acatttacac 3421 ctacaactgc caatacaata tcaaatacat ctggtggtaa tgtgagtacc agtgccagta 3481 gcagtggtat tagtggaagc gttagcaccg gcctagatac catagctgat agacaatata 3541 tcgtaattgc aagcgaaaaa caaactaaag tcttcgatat tgcaaatcaa tgttgtatta 3601 atcgcattca attatctgaa atggattttg cggttaaagc aaaaactatc acaatgaaag 3661 atggaacttg cctagcaacc tatctttcca atggccatct aatggtacat agtcttccta 3721 gtctaaagtt gttattggat acagagttct taccacttat ggacttaagt tttcaaacca 3781 aatgcaaaca gggaattgtg gatccaatgc tttccatatg gggtcaacaa atcattgttc 3841 acgaagatat aacacaaata tcaaaaattt tttgcttcag taataaaggt catggtctgt 3901 acatggcatc acccaccgaa atacaaaagt ttacaatatc gtcagagttt tgtcaattta 3961 ttttagatat gatgggatca ttgtacacgg ttcaagagat gcctgaacag ccaaaggaga 4021 gtttctttaa aggattattt ggtggcggcg ccaaaagtct ggacagagaa gaactatttg 4081 gagaacaaag cgggaaggca aaccgttctg tagctaaaca cattccgggc ccaacactcg 4141 aacaattgaa tcagagagct tcaacagcgg catccgaaat cagtcgcgcc catctattgg 4201 caatggaacg cggcgaaaaa cttaatatgc tggaagagcg agccgaacgt atggccaatc 4261 aagctcaaga tttcagcggc acagcgcatc aattaatgct taaatacaag gataaaaagt 4321 ggtaccagtt gtaaaatatc tattacagga gccaattcta ccacagttat tgtaatattg 4381 cttttataac aacaacaaca aaaacaacaa caacaaacac tttctactac attaaagtac 4441 acttatttaa tttctgtttt caaatcgtca tgttatttat atattaaaaa aaaaaacaaa 4501 aacaaaaaac caacaaaaaa caaagtaaaa atatattaaa ctacaacaaa atgtttttaa 4561 taaaatatag accaataaaa cgtgttacag atttacaa