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LOCUS XM_013247198 4921 bp mRNA linear INV 02-SEP-2023 (LOC106083902), transcript variant X4, mRNA. ACCESSION XM_013247198 VERSION XM_013247198.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013247198.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4921 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4921 /gene="LOC106083902" /note="syntaxin-binding protein 5; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins" /db_xref="GeneID:106083902" CDS 536..4657 /gene="LOC106083902" /codon_start=1 /product="syntaxin-binding protein 5 isoform X1" /protein_id="XP_013102652.1" /db_xref="GeneID:106083902" /translation="MKKFTFRGVLDGFRQTVQPQTARQEQEIHETLRPDHFTIRKTFR HGFPYSPTTFAFDPVQRLLVIGDKSGSLRLLGRPGVDTHISHEGESACPVILSEFLVN DGKLVTVTADDTIHLWNIRQKVPQVIQSLKFQRERVTCIHLAVASKWLYVGTEKGNIH VVNIETFALSGYVINWNKAIELARANHPGAVIALCDNPIDANKLLIAYECGLLVLWDL KSKFAEIRWVSSDPVKSIAWHYEGKYFVSSHKDGSICSWPMKPTPKPQSLVYPHAKTS REGTVEKCNPIYKVDLKASQSGETFTIFSGGMPTEKGAKSNCITVMVGKTTTVLEMEH AVVDFITLCENPWTSETQEPYAIAVLLQYDLVLIDLLTPGFPCFESPYPMDLHESPVT YCTYLTDCPSDLVPAFYSVGRTTTSKKTGFSEREWPVSGGEWSPASCSYAEIVITGHQ DGTIKFWDSGAGTLQILYKLKTAKIFEKSKSLQTDSGVEHPLAIQLIHLCSVSRRLCV AGAMGQVILFKFRKVETTSDVLVLEIPILFENFDDIYGTSPECDFIPHQVQKTESSES DKTDNLLRVKTGAQRKPPGFQSQLVCLTTGPNKRIVQVTSLCISSTYGLMAYGTEYGL VIIDIIQKVCLLSIACPDLYGAHDPYSRTPKSPKRIETKDQDQSRSPSSDQLHDTTSP DSPSIEYIAEGNESNPDQSNPSSRPASPDEDKGAVGGMPAKSPMRDEVSIPPKELPDR RKSMSWKTFNLKRQLSKVNMKIGLNMGGDSEATPKSTSVFYTQTECSGENSDDSPPKD PIAMGVECRESMTETNLREALEAAGDSGNVGEGDSGSDVPPPLPSRRVDFTSDSEGGQ QSTRPNNLPISSTAGGGDPNVPPPRPPRQKLKEKRDQRLLSVPNIKYQVREARLRPNR NDSSPSLGAAGGNAVTKKSQKLDGSFSRSRSSSMSSIDMSSAESVTCLAFIESYAKKN DMLSIVPTLWVGTSFGSILTLVVTMPEREVRKSQPVLVTINGGPVLRLKGSITSMSFL DAYGTIIPFSSEPWRDDSRDTKKERTPTKSSSRTSPTFTPTTANTISNTSGGNVSTSA SSSGISGSVSTGLDTIADRQYIVIASEKQTKVFDIANQCCINRIQLSEMDFAVKAKTI TMKDGTCLATYLSNGHLMVHSLPSLKLLLDTEFLPLMDLSFQTKCKQGIVDPMLSIWG QQIIVHEDITQISKIFCFSNKGHGLYMASPTEIQKFTISSEFCQFILDMMGSLYTVQE MPEQPKESFFKGLFGGGAKSLDREELFGEQSGKANRSVAKHIPGPTLEQLNQRASTAA SEISRAHLLAMERGEKLNMLEERAERMANQAQDFSGTAHQLMLKYKDKKWYQL" misc_feature 689..799 /gene="LOC106083902" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature <698..1306 /gene="LOC106083902" /note="WD40 repeat [General function prediction only]; Region: WD40; COG2319" /db_xref="CDD:441893" misc_feature 818..934 /gene="LOC106083902" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 947..1048 /gene="LOC106083902" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1232..1312 /gene="LOC106083902" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1379..1663 /gene="LOC106083902" /note="LLGL2; Region: LLGL; pfam08366" /db_xref="CDD:462446" misc_feature 4451..4633 /gene="LOC106083902" /note="SNARE domain of STXBP5, STXBP6 and related proteins; Region: R-SNARE_STXBP5_6; cd15873" /db_xref="CDD:277226" misc_feature order(4460..4462,4469..4474,4478..4480,4490..4495, 4499..4507,4511..4516,4520..4525,4532..4537,4541..4558, 4562..4579,4583..4600,4604..4612,4616..4621,4628..4630) /gene="LOC106083902" /note="heterotetramer interface [polypeptide binding]; other site" /db_xref="CDD:277226" misc_feature 4532..4534 /gene="LOC106083902" /note="zero layer; other site" /db_xref="CDD:277226" polyA_site 4921 /gene="LOC106083902" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gacgaccaca ctgttagcca atgacttgct gacgactgcg gcaacgacta catacacaac 61 aaatttcggt ggatccttgt ttcattattt gcaataacat aaaatcaaat tgattagtaa 121 aaaaaggctt tagaaaaata attaaaaaaa aaaaccttaa aatatttaat taaaagttaa 181 atatgttata aaaaaattaa acagcataaa atttatacat tatacgcatt acatgttata 241 aagcctaagt gagagaagcc atcaattgat acataatttt ttgaaaaaca aataaaaaag 301 taaaacaaag taatttcaaa taacagaaaa caattccata gaaaaaaatc tcaaacttat 361 ttgaaatgtg tgccaaagtg aaaagtttcc cagtgatgtt ggctttgtaa agatgtcaaa 421 gtaactttct tggaagggca aatggattat ttgtaagatt ggctgctgca aacttactgt 481 aaagctacaa gtcctctaca acacaaattc caaaaaatca ttctatgtgt aaaaaatgaa 541 aaagttcaca tttagaggcg ttcttgatgg atttcgacaa acggttcagc cgcaaactgc 601 aagacaagag caggagattc atgagaccct tagaccagac cattttacga taagaaagac 661 ctttcgtcat ggatttccct actctccaac gacatttgca tttgatccag tacaaaggct 721 gttagttatt ggcgacaaat cgggcagtct aagattattg ggccgtccgg gtgtggatac 781 tcatatcagt catgaaggtg aatctgcatg tcccgtaatt ctatccgaat ttttagtcaa 841 tgatggaaaa ttggtaaccg tgaccgcaga tgacacaata catttgtgga atatacgcca 901 aaaagtacct caagtcatac aaagcttaaa atttcaacga gaaagagtaa catgcattca 961 cttagcagtg gcaagcaaat ggctgtatgt tggcacagaa aaaggcaaca ttcatgtggt 1021 caacatagag acatttgccc ttagcggtta cgttataaac tggaacaaag caattgaatt 1081 ggctagagct aatcatcctg gtgctgtgat tgcattatgt gataatccaa tagatgcaaa 1141 taagttgttg attgcatacg aatgtggttt gcttgtcctt tgggacttga aatccaaatt 1201 tgccgagatc agatgggtat cctcggatcc ggtgaagtca atagcatggc attatgaagg 1261 aaaatatttt gtatcctcgc ataaagatgg ttccatatgt tcatggccta tgaagccgac 1321 cccaaaacct caatctctag tctatcctca tgccaaaaca tcgagagagg gtacggttga 1381 aaaatgcaat ccaatttaca aagttgattt gaaagcttct caatctggag aaacctttac 1441 gattttttcg ggtggtatgc caacagagaa gggagcaaaa tccaattgta tcactgttat 1501 ggtggggaag acaaccaccg tcttagaaat ggaacatgct gttgttgatt ttataacact 1561 ttgtgaaaac ccttggacta gtgaaaccca agaaccatat gcgatagcag tacttctgca 1621 gtatgattta gtattaatag acttacttac acccggtttt ccatgtttcg aatcgcctta 1681 tcccatggac ttacacgaat cacctgttac atattgcact tacttaactg attgcccctc 1741 ggatttggtt cctgcttttt actctgttgg ccgtactacg acatctaaaa aaactggttt 1801 ctccgaaaga gaatggcctg tatcaggtgg agaatggtca ccagcgtctt gtagttatgc 1861 cgaaatagtc ataacaggtc atcaagatgg caccataaaa ttttgggatt ctggtgcagg 1921 cacattacag attttatata aactgaagac agcaaagata tttgaaaaat ccaaatccct 1981 acaaacagac agcggtgtgg aacatcctct ggcaattcaa ttaatacatc tttgctctgt 2041 gtccagacgt ttatgtgttg cgggcgcaat gggccaagta attttgttta aatttcgcaa 2101 agttgaaacc acttcagacg ttttggttct ggagattcca atactctttg agaactttga 2161 tgatatttat ggtactagtc cggaatgtga ttttatacca catcaagttc aaaaaactga 2221 atcaagtgaa tctgataaga cggacaattt actacgagtc aaaacaggag cacaacgaaa 2281 gcctccaggg tttcagtcac agttagtttg tttaacaact ggcccaaata agagaattgt 2341 tcaagtcaca tcattatgta tcagttctac atatggatta atggcttatg gcacggaata 2401 tggacttgtt attatcgata ttatacagaa agtctgctta ttgagcattg cctgtcccga 2461 cttgtatggt gcgcacgatc cctattcgcg aacacccaaa agtcccaaac gcattgaaac 2521 caaggatcag gatcagagtc gctcacccag ctccgatcag cttcacgaca ccacaagccc 2581 cgatagtcca tcgatcgaat acatagctga aggcaatgaa tcgaatccgg atcaatcgaa 2641 tccttcatca cgcccagcct cgccggatga ggataaaggt gcagtgggcg gcatgccagc 2701 caagagtccc atgcgcgacg aagtgtcaat tccccccaaa gaacttccgg acagacgcaa 2761 gtccatgtcc tggaagacat tcaacttgaa acgtcaatta tctaaagtca atatgaaaat 2821 cggccttaat atgggtggcg acagtgaggc gaccccaaag agtacatcag tgttttacac 2881 tcaaacggaa tgttccggcg aaaacagcga cgattcgccg cccaaggatc ccatagcaat 2941 gggggttgaa tgtcgcgaga gcatgacaga aacgaattta cgcgaagctc tagaggctgc 3001 cggagatagt gggaacgttg gtgagggtga cagtggcagt gatgtaccac cacctttgcc 3061 aagcaggcgt gtcgatttta ccagcgattc cgaaggtggc caacagagca ctagaccaaa 3121 taatttgcca atctcatcga cagcgggtgg tggagatccc aatgtaccgc caccacgacc 3181 accgcgccaa aaactcaaag agaaaagaga tcaacgtctg ctctcggttc ccaatataaa 3241 atatcaagtg cgtgaggcac ggctgcgccc caatcgcaat gactcgtcgc cttcgctggg 3301 tgccgccggt ggtaacgccg taactaaaaa atcgcaaaaa ttggatgggt cattttcaag 3361 atctagatca tcgtcgatgt cgagcatcga catgtcttcc gcagagtctg taacctgttt 3421 ggcttttatt gaaagctatg ccaaaaagaa tgacatgctc tctatagtcc caactttgtg 3481 ggttggcaca agttttggtt ccatactaac gctggtcgtt accatgcctg aacgtgaagt 3541 gcgcaaatct caaccagttt tggtcacaat taatggcggt ccagtattac gtctaaaagg 3601 atcaataaca tcaatgtcat ttttggatgc ttatggcaca attataccat tttcctctga 3661 accatggcga gatgacagta gggatacaaa aaaagaacga acgccaacaa aaagtagcag 3721 tcgaacaagt cctacattta cacctacaac tgccaataca atatcaaata catctggtgg 3781 taatgtgagt accagtgcca gtagcagtgg tattagtgga agcgttagca ccggcctaga 3841 taccatagct gatagacaat atatcgtaat tgcaagcgaa aaacaaacta aagtcttcga 3901 tattgcaaat caatgttgta ttaatcgcat tcaattatct gaaatggatt ttgcggttaa 3961 agcaaaaact atcacaatga aagatggaac ttgcctagca acctatcttt ccaatggcca 4021 tctaatggta catagtcttc ctagtctaaa gttgttattg gatacagagt tcttaccact 4081 tatggactta agttttcaaa ccaaatgcaa acagggaatt gtggatccaa tgctttccat 4141 atggggtcaa caaatcattg ttcacgaaga tataacacaa atatcaaaaa ttttttgctt 4201 cagtaataaa ggtcatggtc tgtacatggc atcacccacc gaaatacaaa agtttacaat 4261 atcgtcagag ttttgtcaat ttattttaga tatgatggga tcattgtaca cggttcaaga 4321 gatgcctgaa cagccaaagg agagtttctt taaaggatta tttggtggcg gcgccaaaag 4381 tctggacaga gaagaactat ttggagaaca aagcgggaag gcaaaccgtt ctgtagctaa 4441 acacattccg ggcccaacac tcgaacaatt gaatcagaga gcttcaacag cggcatccga 4501 aatcagtcgc gcccatctat tggcaatgga acgcggcgaa aaacttaata tgctggaaga 4561 gcgagccgaa cgtatggcca atcaagctca agatttcagc ggcacagcgc atcaattaat 4621 gcttaaatac aaggataaaa agtggtacca gttgtaaaat atctattaca ggagccaatt 4681 ctaccacagt tattgtaata ttgcttttat aacaacaaca acaaaaacaa caacaacaaa 4741 cactttctac tacattaaag tacacttatt taatttctgt tttcaaatcg tcatgttatt 4801 tatatattaa aaaaaaaaac aaaaacaaaa aaccaacaaa aaacaaagta aaaatatatt 4861 aaactacaac aaaatgtttt taataaaata tagaccaata aaacgtgtta cagatttaca 4921 a