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LOCUS XM_013247197 4618 bp mRNA linear INV 02-SEP-2023 (LOC106083902), transcript variant X3, mRNA. ACCESSION XM_013247197 VERSION XM_013247197.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013247197.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4618 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4618 /gene="LOC106083902" /note="syntaxin-binding protein 5; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins" /db_xref="GeneID:106083902" CDS 233..4354 /gene="LOC106083902" /codon_start=1 /product="syntaxin-binding protein 5 isoform X1" /protein_id="XP_013102651.1" /db_xref="GeneID:106083902" /translation="MKKFTFRGVLDGFRQTVQPQTARQEQEIHETLRPDHFTIRKTFR HGFPYSPTTFAFDPVQRLLVIGDKSGSLRLLGRPGVDTHISHEGESACPVILSEFLVN DGKLVTVTADDTIHLWNIRQKVPQVIQSLKFQRERVTCIHLAVASKWLYVGTEKGNIH VVNIETFALSGYVINWNKAIELARANHPGAVIALCDNPIDANKLLIAYECGLLVLWDL KSKFAEIRWVSSDPVKSIAWHYEGKYFVSSHKDGSICSWPMKPTPKPQSLVYPHAKTS REGTVEKCNPIYKVDLKASQSGETFTIFSGGMPTEKGAKSNCITVMVGKTTTVLEMEH AVVDFITLCENPWTSETQEPYAIAVLLQYDLVLIDLLTPGFPCFESPYPMDLHESPVT YCTYLTDCPSDLVPAFYSVGRTTTSKKTGFSEREWPVSGGEWSPASCSYAEIVITGHQ DGTIKFWDSGAGTLQILYKLKTAKIFEKSKSLQTDSGVEHPLAIQLIHLCSVSRRLCV AGAMGQVILFKFRKVETTSDVLVLEIPILFENFDDIYGTSPECDFIPHQVQKTESSES DKTDNLLRVKTGAQRKPPGFQSQLVCLTTGPNKRIVQVTSLCISSTYGLMAYGTEYGL VIIDIIQKVCLLSIACPDLYGAHDPYSRTPKSPKRIETKDQDQSRSPSSDQLHDTTSP DSPSIEYIAEGNESNPDQSNPSSRPASPDEDKGAVGGMPAKSPMRDEVSIPPKELPDR RKSMSWKTFNLKRQLSKVNMKIGLNMGGDSEATPKSTSVFYTQTECSGENSDDSPPKD PIAMGVECRESMTETNLREALEAAGDSGNVGEGDSGSDVPPPLPSRRVDFTSDSEGGQ QSTRPNNLPISSTAGGGDPNVPPPRPPRQKLKEKRDQRLLSVPNIKYQVREARLRPNR NDSSPSLGAAGGNAVTKKSQKLDGSFSRSRSSSMSSIDMSSAESVTCLAFIESYAKKN DMLSIVPTLWVGTSFGSILTLVVTMPEREVRKSQPVLVTINGGPVLRLKGSITSMSFL DAYGTIIPFSSEPWRDDSRDTKKERTPTKSSSRTSPTFTPTTANTISNTSGGNVSTSA SSSGISGSVSTGLDTIADRQYIVIASEKQTKVFDIANQCCINRIQLSEMDFAVKAKTI TMKDGTCLATYLSNGHLMVHSLPSLKLLLDTEFLPLMDLSFQTKCKQGIVDPMLSIWG QQIIVHEDITQISKIFCFSNKGHGLYMASPTEIQKFTISSEFCQFILDMMGSLYTVQE MPEQPKESFFKGLFGGGAKSLDREELFGEQSGKANRSVAKHIPGPTLEQLNQRASTAA SEISRAHLLAMERGEKLNMLEERAERMANQAQDFSGTAHQLMLKYKDKKWYQL" misc_feature 386..496 /gene="LOC106083902" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature <395..1003 /gene="LOC106083902" /note="WD40 repeat [General function prediction only]; Region: WD40; COG2319" /db_xref="CDD:441893" misc_feature 515..631 /gene="LOC106083902" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 644..745 /gene="LOC106083902" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 929..1009 /gene="LOC106083902" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1076..1360 /gene="LOC106083902" /note="LLGL2; Region: LLGL; pfam08366" /db_xref="CDD:462446" misc_feature 4148..4330 /gene="LOC106083902" /note="SNARE domain of STXBP5, STXBP6 and related proteins; Region: R-SNARE_STXBP5_6; cd15873" /db_xref="CDD:277226" misc_feature order(4157..4159,4166..4171,4175..4177,4187..4192, 4196..4204,4208..4213,4217..4222,4229..4234,4238..4255, 4259..4276,4280..4297,4301..4309,4313..4318,4325..4327) /gene="LOC106083902" /note="heterotetramer interface [polypeptide binding]; other site" /db_xref="CDD:277226" misc_feature 4229..4231 /gene="LOC106083902" /note="zero layer; other site" /db_xref="CDD:277226" polyA_site 4618 /gene="LOC106083902" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tgtttttttt ttgttcgtga tatcatcccg ttgttttata tatcaataaa acgtttgaag 61 aaaagtggag aaatcgttga acggtcgttt ttgcacacac acttgacaaa aaaaaaactt 121 gtatcgaaac aggggcaaat ggattatttg taagattggc tgctgcaaac ttactgtaaa 181 gctacaagtc ctctacaaca caaattccaa aaaatcattc tatgtgtaaa aaatgaaaaa 241 gttcacattt agaggcgttc ttgatggatt tcgacaaacg gttcagccgc aaactgcaag 301 acaagagcag gagattcatg agacccttag accagaccat tttacgataa gaaagacctt 361 tcgtcatgga tttccctact ctccaacgac atttgcattt gatccagtac aaaggctgtt 421 agttattggc gacaaatcgg gcagtctaag attattgggc cgtccgggtg tggatactca 481 tatcagtcat gaaggtgaat ctgcatgtcc cgtaattcta tccgaatttt tagtcaatga 541 tggaaaattg gtaaccgtga ccgcagatga cacaatacat ttgtggaata tacgccaaaa 601 agtacctcaa gtcatacaaa gcttaaaatt tcaacgagaa agagtaacat gcattcactt 661 agcagtggca agcaaatggc tgtatgttgg cacagaaaaa ggcaacattc atgtggtcaa 721 catagagaca tttgccctta gcggttacgt tataaactgg aacaaagcaa ttgaattggc 781 tagagctaat catcctggtg ctgtgattgc attatgtgat aatccaatag atgcaaataa 841 gttgttgatt gcatacgaat gtggtttgct tgtcctttgg gacttgaaat ccaaatttgc 901 cgagatcaga tgggtatcct cggatccggt gaagtcaata gcatggcatt atgaaggaaa 961 atattttgta tcctcgcata aagatggttc catatgttca tggcctatga agccgacccc 1021 aaaacctcaa tctctagtct atcctcatgc caaaacatcg agagagggta cggttgaaaa 1081 atgcaatcca atttacaaag ttgatttgaa agcttctcaa tctggagaaa cctttacgat 1141 tttttcgggt ggtatgccaa cagagaaggg agcaaaatcc aattgtatca ctgttatggt 1201 ggggaagaca accaccgtct tagaaatgga acatgctgtt gttgatttta taacactttg 1261 tgaaaaccct tggactagtg aaacccaaga accatatgcg atagcagtac ttctgcagta 1321 tgatttagta ttaatagact tacttacacc cggttttcca tgtttcgaat cgccttatcc 1381 catggactta cacgaatcac ctgttacata ttgcacttac ttaactgatt gcccctcgga 1441 tttggttcct gctttttact ctgttggccg tactacgaca tctaaaaaaa ctggtttctc 1501 cgaaagagaa tggcctgtat caggtggaga atggtcacca gcgtcttgta gttatgccga 1561 aatagtcata acaggtcatc aagatggcac cataaaattt tgggattctg gtgcaggcac 1621 attacagatt ttatataaac tgaagacagc aaagatattt gaaaaatcca aatccctaca 1681 aacagacagc ggtgtggaac atcctctggc aattcaatta atacatcttt gctctgtgtc 1741 cagacgttta tgtgttgcgg gcgcaatggg ccaagtaatt ttgtttaaat ttcgcaaagt 1801 tgaaaccact tcagacgttt tggttctgga gattccaata ctctttgaga actttgatga 1861 tatttatggt actagtccgg aatgtgattt tataccacat caagttcaaa aaactgaatc 1921 aagtgaatct gataagacgg acaatttact acgagtcaaa acaggagcac aacgaaagcc 1981 tccagggttt cagtcacagt tagtttgttt aacaactggc ccaaataaga gaattgttca 2041 agtcacatca ttatgtatca gttctacata tggattaatg gcttatggca cggaatatgg 2101 acttgttatt atcgatatta tacagaaagt ctgcttattg agcattgcct gtcccgactt 2161 gtatggtgcg cacgatccct attcgcgaac acccaaaagt cccaaacgca ttgaaaccaa 2221 ggatcaggat cagagtcgct cacccagctc cgatcagctt cacgacacca caagccccga 2281 tagtccatcg atcgaataca tagctgaagg caatgaatcg aatccggatc aatcgaatcc 2341 ttcatcacgc ccagcctcgc cggatgagga taaaggtgca gtgggcggca tgccagccaa 2401 gagtcccatg cgcgacgaag tgtcaattcc ccccaaagaa cttccggaca gacgcaagtc 2461 catgtcctgg aagacattca acttgaaacg tcaattatct aaagtcaata tgaaaatcgg 2521 ccttaatatg ggtggcgaca gtgaggcgac cccaaagagt acatcagtgt tttacactca 2581 aacggaatgt tccggcgaaa acagcgacga ttcgccgccc aaggatccca tagcaatggg 2641 ggttgaatgt cgcgagagca tgacagaaac gaatttacgc gaagctctag aggctgccgg 2701 agatagtggg aacgttggtg agggtgacag tggcagtgat gtaccaccac ctttgccaag 2761 caggcgtgtc gattttacca gcgattccga aggtggccaa cagagcacta gaccaaataa 2821 tttgccaatc tcatcgacag cgggtggtgg agatcccaat gtaccgccac cacgaccacc 2881 gcgccaaaaa ctcaaagaga aaagagatca acgtctgctc tcggttccca atataaaata 2941 tcaagtgcgt gaggcacggc tgcgccccaa tcgcaatgac tcgtcgcctt cgctgggtgc 3001 cgccggtggt aacgccgtaa ctaaaaaatc gcaaaaattg gatgggtcat tttcaagatc 3061 tagatcatcg tcgatgtcga gcatcgacat gtcttccgca gagtctgtaa cctgtttggc 3121 ttttattgaa agctatgcca aaaagaatga catgctctct atagtcccaa ctttgtgggt 3181 tggcacaagt tttggttcca tactaacgct ggtcgttacc atgcctgaac gtgaagtgcg 3241 caaatctcaa ccagttttgg tcacaattaa tggcggtcca gtattacgtc taaaaggatc 3301 aataacatca atgtcatttt tggatgctta tggcacaatt ataccatttt cctctgaacc 3361 atggcgagat gacagtaggg atacaaaaaa agaacgaacg ccaacaaaaa gtagcagtcg 3421 aacaagtcct acatttacac ctacaactgc caatacaata tcaaatacat ctggtggtaa 3481 tgtgagtacc agtgccagta gcagtggtat tagtggaagc gttagcaccg gcctagatac 3541 catagctgat agacaatata tcgtaattgc aagcgaaaaa caaactaaag tcttcgatat 3601 tgcaaatcaa tgttgtatta atcgcattca attatctgaa atggattttg cggttaaagc 3661 aaaaactatc acaatgaaag atggaacttg cctagcaacc tatctttcca atggccatct 3721 aatggtacat agtcttccta gtctaaagtt gttattggat acagagttct taccacttat 3781 ggacttaagt tttcaaacca aatgcaaaca gggaattgtg gatccaatgc tttccatatg 3841 gggtcaacaa atcattgttc acgaagatat aacacaaata tcaaaaattt tttgcttcag 3901 taataaaggt catggtctgt acatggcatc acccaccgaa atacaaaagt ttacaatatc 3961 gtcagagttt tgtcaattta ttttagatat gatgggatca ttgtacacgg ttcaagagat 4021 gcctgaacag ccaaaggaga gtttctttaa aggattattt ggtggcggcg ccaaaagtct 4081 ggacagagaa gaactatttg gagaacaaag cgggaaggca aaccgttctg tagctaaaca 4141 cattccgggc ccaacactcg aacaattgaa tcagagagct tcaacagcgg catccgaaat 4201 cagtcgcgcc catctattgg caatggaacg cggcgaaaaa cttaatatgc tggaagagcg 4261 agccgaacgt atggccaatc aagctcaaga tttcagcggc acagcgcatc aattaatgct 4321 taaatacaag gataaaaagt ggtaccagtt gtaaaatatc tattacagga gccaattcta 4381 ccacagttat tgtaatattg cttttataac aacaacaaca aaaacaacaa caacaaacac 4441 tttctactac attaaagtac acttatttaa tttctgtttt caaatcgtca tgttatttat 4501 atattaaaaa aaaaaacaaa aacaaaaaac caacaaaaaa caaagtaaaa atatattaaa 4561 ctacaacaaa atgtttttaa taaaatatag accaataaaa cgtgttacag atttacaa