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LOCUS XM_013247196 4667 bp mRNA linear INV 02-SEP-2023 (LOC106083902), transcript variant X2, mRNA. ACCESSION XM_013247196 VERSION XM_013247196.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013247196.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4667 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4667 /gene="LOC106083902" /note="syntaxin-binding protein 5; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins" /db_xref="GeneID:106083902" CDS 282..4403 /gene="LOC106083902" /codon_start=1 /product="syntaxin-binding protein 5 isoform X1" /protein_id="XP_013102650.1" /db_xref="GeneID:106083902" /translation="MKKFTFRGVLDGFRQTVQPQTARQEQEIHETLRPDHFTIRKTFR HGFPYSPTTFAFDPVQRLLVIGDKSGSLRLLGRPGVDTHISHEGESACPVILSEFLVN DGKLVTVTADDTIHLWNIRQKVPQVIQSLKFQRERVTCIHLAVASKWLYVGTEKGNIH VVNIETFALSGYVINWNKAIELARANHPGAVIALCDNPIDANKLLIAYECGLLVLWDL KSKFAEIRWVSSDPVKSIAWHYEGKYFVSSHKDGSICSWPMKPTPKPQSLVYPHAKTS REGTVEKCNPIYKVDLKASQSGETFTIFSGGMPTEKGAKSNCITVMVGKTTTVLEMEH AVVDFITLCENPWTSETQEPYAIAVLLQYDLVLIDLLTPGFPCFESPYPMDLHESPVT YCTYLTDCPSDLVPAFYSVGRTTTSKKTGFSEREWPVSGGEWSPASCSYAEIVITGHQ DGTIKFWDSGAGTLQILYKLKTAKIFEKSKSLQTDSGVEHPLAIQLIHLCSVSRRLCV AGAMGQVILFKFRKVETTSDVLVLEIPILFENFDDIYGTSPECDFIPHQVQKTESSES DKTDNLLRVKTGAQRKPPGFQSQLVCLTTGPNKRIVQVTSLCISSTYGLMAYGTEYGL VIIDIIQKVCLLSIACPDLYGAHDPYSRTPKSPKRIETKDQDQSRSPSSDQLHDTTSP DSPSIEYIAEGNESNPDQSNPSSRPASPDEDKGAVGGMPAKSPMRDEVSIPPKELPDR RKSMSWKTFNLKRQLSKVNMKIGLNMGGDSEATPKSTSVFYTQTECSGENSDDSPPKD PIAMGVECRESMTETNLREALEAAGDSGNVGEGDSGSDVPPPLPSRRVDFTSDSEGGQ QSTRPNNLPISSTAGGGDPNVPPPRPPRQKLKEKRDQRLLSVPNIKYQVREARLRPNR NDSSPSLGAAGGNAVTKKSQKLDGSFSRSRSSSMSSIDMSSAESVTCLAFIESYAKKN DMLSIVPTLWVGTSFGSILTLVVTMPEREVRKSQPVLVTINGGPVLRLKGSITSMSFL DAYGTIIPFSSEPWRDDSRDTKKERTPTKSSSRTSPTFTPTTANTISNTSGGNVSTSA SSSGISGSVSTGLDTIADRQYIVIASEKQTKVFDIANQCCINRIQLSEMDFAVKAKTI TMKDGTCLATYLSNGHLMVHSLPSLKLLLDTEFLPLMDLSFQTKCKQGIVDPMLSIWG QQIIVHEDITQISKIFCFSNKGHGLYMASPTEIQKFTISSEFCQFILDMMGSLYTVQE MPEQPKESFFKGLFGGGAKSLDREELFGEQSGKANRSVAKHIPGPTLEQLNQRASTAA SEISRAHLLAMERGEKLNMLEERAERMANQAQDFSGTAHQLMLKYKDKKWYQL" misc_feature 435..545 /gene="LOC106083902" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature <444..1052 /gene="LOC106083902" /note="WD40 repeat [General function prediction only]; Region: WD40; COG2319" /db_xref="CDD:441893" misc_feature 564..680 /gene="LOC106083902" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 693..794 /gene="LOC106083902" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 978..1058 /gene="LOC106083902" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1125..1409 /gene="LOC106083902" /note="LLGL2; Region: LLGL; pfam08366" /db_xref="CDD:462446" misc_feature 4197..4379 /gene="LOC106083902" /note="SNARE domain of STXBP5, STXBP6 and related proteins; Region: R-SNARE_STXBP5_6; cd15873" /db_xref="CDD:277226" misc_feature order(4206..4208,4215..4220,4224..4226,4236..4241, 4245..4253,4257..4262,4266..4271,4278..4283,4287..4304, 4308..4325,4329..4346,4350..4358,4362..4367,4374..4376) /gene="LOC106083902" /note="heterotetramer interface [polypeptide binding]; other site" /db_xref="CDD:277226" misc_feature 4278..4280 /gene="LOC106083902" /note="zero layer; other site" /db_xref="CDD:277226" polyA_site 4667 /gene="LOC106083902" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tttttaaaca aatctcctta ataataacat tggtgttgga tacatttata aactatagta 61 ttaaactaat tgaagtttaa agtggaagtg tgttttttta tgtgaatttg taggtggaga 121 aatcgttgaa cggtcgtttt tgcacacaca cttgacaaaa aaaaaacttg tatcgaaaca 181 ggggcaaatg gattatttgt aagattggct gctgcaaact tactgtaaag ctacaagtcc 241 tctacaacac aaattccaaa aaatcattct atgtgtaaaa aatgaaaaag ttcacattta 301 gaggcgttct tgatggattt cgacaaacgg ttcagccgca aactgcaaga caagagcagg 361 agattcatga gacccttaga ccagaccatt ttacgataag aaagaccttt cgtcatggat 421 ttccctactc tccaacgaca tttgcatttg atccagtaca aaggctgtta gttattggcg 481 acaaatcggg cagtctaaga ttattgggcc gtccgggtgt ggatactcat atcagtcatg 541 aaggtgaatc tgcatgtccc gtaattctat ccgaattttt agtcaatgat ggaaaattgg 601 taaccgtgac cgcagatgac acaatacatt tgtggaatat acgccaaaaa gtacctcaag 661 tcatacaaag cttaaaattt caacgagaaa gagtaacatg cattcactta gcagtggcaa 721 gcaaatggct gtatgttggc acagaaaaag gcaacattca tgtggtcaac atagagacat 781 ttgcccttag cggttacgtt ataaactgga acaaagcaat tgaattggct agagctaatc 841 atcctggtgc tgtgattgca ttatgtgata atccaataga tgcaaataag ttgttgattg 901 catacgaatg tggtttgctt gtcctttggg acttgaaatc caaatttgcc gagatcagat 961 gggtatcctc ggatccggtg aagtcaatag catggcatta tgaaggaaaa tattttgtat 1021 cctcgcataa agatggttcc atatgttcat ggcctatgaa gccgacccca aaacctcaat 1081 ctctagtcta tcctcatgcc aaaacatcga gagagggtac ggttgaaaaa tgcaatccaa 1141 tttacaaagt tgatttgaaa gcttctcaat ctggagaaac ctttacgatt ttttcgggtg 1201 gtatgccaac agagaaggga gcaaaatcca attgtatcac tgttatggtg gggaagacaa 1261 ccaccgtctt agaaatggaa catgctgttg ttgattttat aacactttgt gaaaaccctt 1321 ggactagtga aacccaagaa ccatatgcga tagcagtact tctgcagtat gatttagtat 1381 taatagactt acttacaccc ggttttccat gtttcgaatc gccttatccc atggacttac 1441 acgaatcacc tgttacatat tgcacttact taactgattg cccctcggat ttggttcctg 1501 ctttttactc tgttggccgt actacgacat ctaaaaaaac tggtttctcc gaaagagaat 1561 ggcctgtatc aggtggagaa tggtcaccag cgtcttgtag ttatgccgaa atagtcataa 1621 caggtcatca agatggcacc ataaaatttt gggattctgg tgcaggcaca ttacagattt 1681 tatataaact gaagacagca aagatatttg aaaaatccaa atccctacaa acagacagcg 1741 gtgtggaaca tcctctggca attcaattaa tacatctttg ctctgtgtcc agacgtttat 1801 gtgttgcggg cgcaatgggc caagtaattt tgtttaaatt tcgcaaagtt gaaaccactt 1861 cagacgtttt ggttctggag attccaatac tctttgagaa ctttgatgat atttatggta 1921 ctagtccgga atgtgatttt ataccacatc aagttcaaaa aactgaatca agtgaatctg 1981 ataagacgga caatttacta cgagtcaaaa caggagcaca acgaaagcct ccagggtttc 2041 agtcacagtt agtttgttta acaactggcc caaataagag aattgttcaa gtcacatcat 2101 tatgtatcag ttctacatat ggattaatgg cttatggcac ggaatatgga cttgttatta 2161 tcgatattat acagaaagtc tgcttattga gcattgcctg tcccgacttg tatggtgcgc 2221 acgatcccta ttcgcgaaca cccaaaagtc ccaaacgcat tgaaaccaag gatcaggatc 2281 agagtcgctc acccagctcc gatcagcttc acgacaccac aagccccgat agtccatcga 2341 tcgaatacat agctgaaggc aatgaatcga atccggatca atcgaatcct tcatcacgcc 2401 cagcctcgcc ggatgaggat aaaggtgcag tgggcggcat gccagccaag agtcccatgc 2461 gcgacgaagt gtcaattccc cccaaagaac ttccggacag acgcaagtcc atgtcctgga 2521 agacattcaa cttgaaacgt caattatcta aagtcaatat gaaaatcggc cttaatatgg 2581 gtggcgacag tgaggcgacc ccaaagagta catcagtgtt ttacactcaa acggaatgtt 2641 ccggcgaaaa cagcgacgat tcgccgccca aggatcccat agcaatgggg gttgaatgtc 2701 gcgagagcat gacagaaacg aatttacgcg aagctctaga ggctgccgga gatagtggga 2761 acgttggtga gggtgacagt ggcagtgatg taccaccacc tttgccaagc aggcgtgtcg 2821 attttaccag cgattccgaa ggtggccaac agagcactag accaaataat ttgccaatct 2881 catcgacagc gggtggtgga gatcccaatg taccgccacc acgaccaccg cgccaaaaac 2941 tcaaagagaa aagagatcaa cgtctgctct cggttcccaa tataaaatat caagtgcgtg 3001 aggcacggct gcgccccaat cgcaatgact cgtcgccttc gctgggtgcc gccggtggta 3061 acgccgtaac taaaaaatcg caaaaattgg atgggtcatt ttcaagatct agatcatcgt 3121 cgatgtcgag catcgacatg tcttccgcag agtctgtaac ctgtttggct tttattgaaa 3181 gctatgccaa aaagaatgac atgctctcta tagtcccaac tttgtgggtt ggcacaagtt 3241 ttggttccat actaacgctg gtcgttacca tgcctgaacg tgaagtgcgc aaatctcaac 3301 cagttttggt cacaattaat ggcggtccag tattacgtct aaaaggatca ataacatcaa 3361 tgtcattttt ggatgcttat ggcacaatta taccattttc ctctgaacca tggcgagatg 3421 acagtaggga tacaaaaaaa gaacgaacgc caacaaaaag tagcagtcga acaagtccta 3481 catttacacc tacaactgcc aatacaatat caaatacatc tggtggtaat gtgagtacca 3541 gtgccagtag cagtggtatt agtggaagcg ttagcaccgg cctagatacc atagctgata 3601 gacaatatat cgtaattgca agcgaaaaac aaactaaagt cttcgatatt gcaaatcaat 3661 gttgtattaa tcgcattcaa ttatctgaaa tggattttgc ggttaaagca aaaactatca 3721 caatgaaaga tggaacttgc ctagcaacct atctttccaa tggccatcta atggtacata 3781 gtcttcctag tctaaagttg ttattggata cagagttctt accacttatg gacttaagtt 3841 ttcaaaccaa atgcaaacag ggaattgtgg atccaatgct ttccatatgg ggtcaacaaa 3901 tcattgttca cgaagatata acacaaatat caaaaatttt ttgcttcagt aataaaggtc 3961 atggtctgta catggcatca cccaccgaaa tacaaaagtt tacaatatcg tcagagtttt 4021 gtcaatttat tttagatatg atgggatcat tgtacacggt tcaagagatg cctgaacagc 4081 caaaggagag tttctttaaa ggattatttg gtggcggcgc caaaagtctg gacagagaag 4141 aactatttgg agaacaaagc gggaaggcaa accgttctgt agctaaacac attccgggcc 4201 caacactcga acaattgaat cagagagctt caacagcggc atccgaaatc agtcgcgccc 4261 atctattggc aatggaacgc ggcgaaaaac ttaatatgct ggaagagcga gccgaacgta 4321 tggccaatca agctcaagat ttcagcggca cagcgcatca attaatgctt aaatacaagg 4381 ataaaaagtg gtaccagttg taaaatatct attacaggag ccaattctac cacagttatt 4441 gtaatattgc ttttataaca acaacaacaa aaacaacaac aacaaacact ttctactaca 4501 ttaaagtaca cttatttaat ttctgttttc aaatcgtcat gttatttata tattaaaaaa 4561 aaaaacaaaa acaaaaaacc aacaaaaaac aaagtaaaaa tatattaaac tacaacaaaa 4621 tgtttttaat aaaatataga ccaataaaac gtgttacaga tttacaa