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LOCUS XM_013247129 4993 bp mRNA linear INV 02-SEP-2023 (LOC106083856), transcript variant X11, mRNA. ACCESSION XM_013247129 VERSION XM_013247129.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013247129.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4993 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4993 /gene="LOC106083856" /note="proton channel OtopLc; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:106083856" CDS 1789..4740 /gene="LOC106083856" /codon_start=1 /product="proton channel OtopLc isoform X10" /protein_id="XP_013102583.2" /db_xref="GeneID:106083856" /translation="MQRCPYIHEMRERLLNDQNRESLPLEQMERANLLDNRQSAELQQ VGTIVKLNGDGYHTSPAHQRTPLVPRDLGEDFNLDFDDDFPIEVRRPKNAKVVYSLKP NSNNRSYLPANITVHGTYHTNIITGPIELWTSLFIVTSLVYAIILIVVCIAYVISDVT THRLPVLYYESFFTYLYGVSILFLLYVFCFLLQESSCCNGGNNQPKSPKKEKKSKKKE KDPADSKDAKGSKDSGKSGKPSPYQDTQVDAEVAVTPKNTRKRKTTHSDLTHGSFFLR VGAIAFGLGAMIYIGLEFGSFFEIPFDSPCHHILIGVNPLLQMIFTFMQMYFIFMNAR LNIHRFKVIARFGLMHVVATNICVWIRTLVKESLLEITLYHQRRESDPNESSIGQSIR QHALRHAGTVLRTHYGPNEEFEVLDGEDLLPKNAYTTNGALSKMLAKTVDGISKTLGM GSNEIADVVTTTTTTTARPAFTTPSYQWQSTTVARKLKKFITSTTAAATMGTSPTTTS TTTTTTTTALPITSPLATTTTTELPFNSYQHLYTTTASPAAAMAAAADHLAASNGGAS EAAATAASSFDSSHVASSVASFFSSLISSTPSPITTTTTNNPITVSSSMTDKATENSF GLINNLMENSFQTFSGISHPEAASIVTFENYENLDNIYPAALSSNVGTLNSTACGRVD IMGTIVYDSAPYLYPFIIEYSLIGAVVLYVMWKHIGRYPGRMNDDDLEHRLEVMLSRR AVAMAQQARSGRVDCVGSSKGLFFGLLLLVGALICLILFFVLVRHQQFSLLAIYLADA SHCILMVFAILAIIIGFIRVKNLKFRCEEQSNLNDILLRISAFGLFTYSVFSVISGSL KVLEHEPSLLVTTTSAVAVLQVILQLLFIADVSRRRVHLPEHDRSKPGRQIVTFLLIC NVAMFAIYTFDAQKVYANPVSRYVQLDFYGFVPWAIIQRVTLPLCIFHRFHSAVTLAE IWKTTYKARLE" polyA_site 4993 /gene="LOC106083856" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ggtagttcca atcagtctga aacgaattgt tgtgaacgat ggaagaaaat aaaaacgttt 61 gaaaaaaatt tggtgtagaa cgttgagaca gacatcatag tgaccgttta tttgtgtgtg 121 tagtaaatca aatcagaata tagagtccga atcagtggtg tttgctggtg agaattgtgt 181 tgtggcttgg tagtgcaaaa aaggaaatag tgaagtctgc caggaagtta ctaaaagaga 241 gagtgaataa atgtgctaaa tatttaataa aaaggaattg gagttacatt gaaaatatag 301 aaaagaaaaa catatcaaaa aagagtttct gacaaaacca aagtttatat caaaattgtt 361 gtaatactat ttaacaaaaa aaaaaaaaag ccccaagtgc catagttgcc agagaagtct 421 gcctataaaa caaaagtatt ttttgcatct ttaaaacaaa aattaaataa aaaaaacaaa 481 atcctttcgc ttttgctgag ccatacaaaa gtagccataa ttgactcttt aatcaaaccc 541 taaacaaaat caaagtcctt tgtgtctaca aaataacggc tactcacacc tttgtttgtt 601 cgccaaagag taaaagtatc aacaaacaaa actaaaaata tactgttaat catacacaca 661 ctcacacaca ctgtcctgtg taagcgcata caaacacagc gtgtctagga tgttcacaaa 721 tccatcatct tcatcattat catctctacc tttataactg gatgtcctca ccttggcagc 781 aggactgaca cacagtgtgt ttgttgttgc tattcaaagt gaagtaccaa aaataaacaa 841 cagcaaaaaa ttgagatttt atagcaacag tgtttggtgg ataggaatag aaagaaatac 901 caaaacaaac gcaaacaaca actaccaccc tcataaaagt ttgcttgtta acgaggagaa 961 aaaactgaat taaggaaagt agacataaaa aaggatacaa aatttcccct tgtataaaat 1021 tgtttgcctt gctattaaat cataagtgtt ggcacctttc ccccccttaa cgaaatcatc 1081 actgccaaaa attcatatcg aaattggtag taaattatcg attaaaaaaa aaaaacaacc 1141 aaacaacaac ctcgttaaat tgtttgcaat tgattgattg atttcgtgct ggttgattaa 1201 atccaagtgc gtgtgtatgt aatcggctaa atttcggttt gacaataatt aagtcatact 1261 taagcttgaa ttcatcaacc taaagtggat gaaattaatt gtggactttt ttcaagtaca 1321 atacatcaaa gtcatcattg tcgtgctaaa gaagctcatc gtgacaacca tataagcgag 1381 actgcctcaa tctatttgga caatacaact ctacacacct aagattatta actggttatc 1441 aaaacaataa aattgaccaa atttattctc cagcaaagct aaatggaatt tcaacaaaat 1501 cgactgattt ttgactatta gatatacaac aaataacaaa aagaagatca aaacaaaaaa 1561 atttatatac acacaaaaaa attgattagg actttttcta caaatccaaa aaaacaaata 1621 ataaaaaaaa aaaaaaacac aaaaccccca ttccctccaa tatcaaaatc agctttattc 1681 tataaactcc agggaaatta aaaacaaacc ctttaacaca tacaaaaaaa gtattatcct 1741 acagcagcat tattcgattt ccccatcccc tcctgttacc gataaggaat gcagcgttgt 1801 ccctatatac atgaaatgcg agaacgttta ttgaacgatc agaatcgtga atcattacca 1861 cttgaacaaa tggagcgagc aaatcttttg gataacagac agtcggctga attacaacag 1921 gtcgggacta tagtcaagct gaatggcgat ggatatcaca caagtccagc ccatcaacgt 1981 acgcccctgg tgcctagaga tttgggcgaa gatttcaact tggatttcga tgatgatttc 2041 cccatagaag taagaaggcc taaaaatgct aaggtcgttt attcactaaa accaaattcg 2101 aataatcgca gttatttacc ggcgaatata accgtacatg gcacatatca caccaatatc 2161 ataaccggac caattgaatt atggacatcg ctgttcattg taaccagctt ggtgtatgcc 2221 atcattttga ttgtggtttg cattgcttac gttataagtg atgtgacaac acatcgtttg 2281 cccgtgctgt actatgagag cttcttcacc tatttgtacg gagtcagcat actcttccta 2341 ttgtatgtct tctgttttct gttacaggaa agttcctgtt gcaatggcgg caacaatcaa 2401 ccgaaatctc ctaaaaaaga aaagaagtct aaaaagaagg aaaaggatcc cgccgattcg 2461 aaagatgcga aaggttctaa ggattctgga aaaagtggca aacccagtcc ttatcaggac 2521 actcaagttg atgctgaagt agctgtaaca cctaaaaata cacgaaaacg taagacaacc 2581 cacagtgatt tgacccatgg cagcttcttt ttgcgagttg gagctattgc ttttggtctg 2641 ggcgccatga tctacattgg tttggagttt ggttcgttct ttgaaatccc cttcgattct 2701 ccctgccatc atatcttgat tggtgtaaat ccattgttgc aaatgatttt taccttcatg 2761 caaatgtact tcatctttat gaatgccaga ttgaatattc accgtttcaa ggtcattgcc 2821 cgttttggcc tcatgcatgt ggtggccact aacatatgtg tctggatacg caccctggtc 2881 aaggaatccc tgcttgaaat tactttgtat catcaacgtc gtgaatccga tcccaatgag 2941 tcttcaatag gtcaatctat acgtcagcat gccttacgtc acgccggcac tgtgttgcgc 3001 acccactatg gacccaatga agagttcgag gtattagatg gtgaagacct tttgcccaag 3061 aatgcctaca ccaccaacgg tgctctatcc aagatgttgg ccaaaacagt ggatggaatt 3121 tcgaaaactt tgggcatggg atccaatgaa attgctgatg tggtgaccac cactactacc 3181 accaccgcaa gaccggcatt taccaccccc agttatcaat ggcaaagcac tactgtggca 3241 cgcaagttga agaagtttat cactagtacc acggcggcgg caaccatggg tacctccccc 3301 actaccacct caacgacgac caccaccacc accacggctt tgccgatcac ctcaccattg 3361 gcgacaacaa cgaccacaga attacccttt aacagttacc agcatttgta tacgacgact 3421 gcctcacccg ctgctgcaat ggccgccgcc gccgatcact tggccgcctc caatggagga 3481 gcgtctgaag cggctgcaac tgctgcctca tcatttgata gctctcatgt ggcctctagt 3541 gtagcctcat ttttctcttc actcatctct agcaccccat cacccatcac aactaccacc 3601 accaacaatc ccatcactgt ctcctcctcc atgacggaca aagccaccga gaattcattt 3661 ggcctcatta acaatctcat ggaaaatagt ttccaaacct tttccggcat ctcccatccc 3721 gaagccgcta gtattgtgac ctttgaaaat tatgaaaatc tggacaacat ctatcccgcc 3781 gccctatcct ccaatgtggg taccttaaac tccactgcct gtggtcgtgt ggacattatg 3841 ggcaccattg tgtacgattc ggctccctat ctgtatccct tcatcataga atattccctc 3901 attggcgccg ttgtcctcta tgtgatgtgg aagcatattg gacgttatcc tggacgcatg 3961 aacgacgacg acttggaaca tcgcctagag gttatgctct cgcggcgtgc tgtggccatg 4021 gcccagcagg ctcgttctgg tcgcgtggac tgcgttggct cttcgaaagg tttattcttt 4081 ggtctattgt tgttggtggg tgctttgata tgtttgatac tcttcttcgt cttggtgcgt 4141 catcagcagt tctcgttgct ggccatctat ttggccgatg ccagtcattg tattttaatg 4201 gtatttgcca tattggccat aatcataggt tttataagag ttaagaatct gaaattccgc 4261 tgcgaggaac aatccaactt gaatgacatt ctcttgcgca tctccgcttt cggcctcttc 4321 acctattccg tattctctgt gatctcgggc agcctcaaag ttttggaaca cgaacccagc 4381 ctcttggtta ccaccaccag cgccgttgcc gttctgcagg tcatccttca gttgttgttc 4441 attgccgatg tttcccgccg tcgcgtccat ttgcccgaac atgatcgcag caaacccggt 4501 cgtcaaattg tcaccttcct tttgatctgc aatgtggcca tgttcgccat ttacactttc 4561 gatgctcaaa aagtatacgc caatcccgta agtagatatg tgcaattgga cttttatggc 4621 tttgtgccat gggccatcat acagcgtgta acactgccac tgtgcatttt ccatcgattc 4681 catagcgctg taacactagc cgagatctgg aagaccacct ataaagcgcg tttggagtaa 4741 atcaattaaa caccgatcga aacatcaccg ccaacaccac cacaacaaca acaacaacaa 4801 aattaccaca acaacacaac aaaacaaaaa cattcaatta catttaagga aattttttgg 4861 gaaaaaacca aaccaaacca acaacaaaag ctagtaaaga agaagaaaaa accgactttt 4921 ttgaaggcag aaaaaaaaat attatcagaa aatgttagtg aatcgtaaaa acaaaactca 4981 atattaatga aaa