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LOCUS XM_013247128 5033 bp mRNA linear INV 02-SEP-2023 (LOC106083856), transcript variant X10, mRNA. ACCESSION XM_013247128 VERSION XM_013247128.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013247128.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5033 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5033 /gene="LOC106083856" /note="proton channel OtopLc; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:106083856" CDS 1790..4780 /gene="LOC106083856" /codon_start=1 /product="proton channel OtopLc isoform X9" /protein_id="XP_013102582.2" /db_xref="GeneID:106083856" /translation="MQRCPYIHEMRERLLNDQNRESLPLEQMERANLLDNRQSAELQQ LNGDGYHTSPAHQRTPLVPRDLGEDFNLDFDDDFPIEVRRPKNAKVVYSLKPNSNNRS YLPANITVHGTYHTNIITGPIELWTSLFIVTSLVYAIILIVVCIAYVISDVTTHRLPV LYYESFFTYLYGVSILFLLYVFCFLLQESSCCNGGNNQPKSPKKEKKSKKKEKDPADS KDAKGSKDSGKSGKPSPYQEKYPVKKRDLVRQTLIPQQDTQVDAEVAVTPKNTRKRKT THSDLTHGSFFLRVGAIAFGLGAMIYIGLEFGSFFEIPFDSPCHHILIGVNPLLQMIF TFMQMYFIFMNARLNIHRFKVIARFGLMHVVATNICVWIRTLVKESLLEITLYHQRRE SDPNESSIGQSIRQHALRHAGTVLRTHYGPNEEFEVLDGEDLLPKNAYTTNGALSKML AKTVDGISKTLGMGSNEIADVVTTTTTTTARPAFTTPSYQWQSTTVARKLKKFITSTT AAATMGTSPTTTSTTTTTTTTALPITSPLATTTTTELPFNSYQHLYTTTASPAAAMAA AADHLAASNGGASEAAATAASSFDSSHVASSVASFFSSLISSTPSPITTTTTNNPITV SSSMTDKATENSFGLINNLMENSFQTFSGISHPEAASIVTFENYENLDNIYPAALSSN VGTLNSTACGRVDIMGTIVYDSAPYLYPFIIEYSLIGAVVLYVMWKHIGRYPGRMNDD DLEHRLEVMLSRRAVAMAQQARSGRVDCVGSSKGLFFGLLLLVGALICLILFFVLVRH QQFSLLAIYLADASHCILMVFAILAIIIGFIRVKNLKFRCEEQSNLNDILLRISAFGL FTYSVFSVISGSLKVLEHEPSLLVTTTSAVAVLQVILQLLFIADVSRRRVHLPEHDRS KPGRQIVTFLLICNVAMFAIYTFDAQKVYANPVSRYVQLDFYGFVPWAIIQRVTLPLC IFHRFHSAVTLAEIWKTTYKARLE" polyA_site 5033 /gene="LOC106083856" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cggtagttcc aatcagtctg aaacgaattg ttgtgaacga tggaagaaaa taaaaacgtt 61 tgaaaaaaat ttggtgtaga acgttgagac agacatcata gtgaccgttt atttgtgtgt 121 gtagtaaatc aaatcagaat atagagtccg aatcagtggt gtttgctggt gagaattgtg 181 ttgtggcttg gtagtgcaaa aaaggaaata gtgaagtctg ccaggaagtt actaaaagag 241 agagtgaata aatgtgctaa atatttaata aaaaggaatt ggagttacat tgaaaatata 301 gaaaagaaaa acatatcaaa aaagagtttc tgacaaaacc aaagtttata tcaaaattgt 361 tgtaatacta tttaacaaaa aaaaaaaaaa gccccaagtg ccatagttgc cagagaagtc 421 tgcctataaa acaaaagtat tttttgcatc tttaaaacaa aaattaaata aaaaaaacaa 481 aatcctttcg cttttgctga gccatacaaa agtagccata attgactctt taatcaaacc 541 ctaaacaaaa tcaaagtcct ttgtgtctac aaaataacgg ctactcacac ctttgtttgt 601 tcgccaaaga gtaaaagtat caacaaacaa aactaaaaat atactgttaa tcatacacac 661 actcacacac actgtcctgt gtaagcgcat acaaacacag cgtgtctagg atgttcacaa 721 atccatcatc ttcatcatta tcatctctac ctttataact ggatgtcctc accttggcag 781 caggactgac acacagtgtg tttgttgttg ctattcaaag tgaagtacca aaaataaaca 841 acagcaaaaa attgagattt tatagcaaca gtgtttggtg gataggaata gaaagaaata 901 ccaaaacaaa cgcaaacaac aactaccacc ctcataaaag tttgcttgtt aacgaggaga 961 aaaaactgaa ttaaggaaag tagacataaa aaaggataca aaatttcccc ttgtataaaa 1021 ttgtttgcct tgctattaaa tcataagtgt tggcaccttt ccccccctta acgaaatcat 1081 cactgccaaa aattcatatc gaaattggta gtaaattatc gattaaaaaa aaaaaacaac 1141 caaacaacaa cctcgttaaa ttgtttgcaa ttgattgatt gatttcgtgc tggttgatta 1201 aatccaagtg cgtgtgtatg taatcggcta aatttcggtt tgacaataat taagtcatac 1261 ttaagcttga attcatcaac ctaaagtgga tgaaattaat tgtggacttt tttcaagtac 1321 aatacatcaa agtcatcatt gtcgtgctaa agaagctcat cgtgacaacc atataagcga 1381 gactgcctca atctatttgg acaatacaac tctacacacc taagattatt aactggttat 1441 caaaacaata aaattgacca aatttattct ccagcaaagc taaatggaat ttcaacaaaa 1501 tcgactgatt tttgactatt agatatacaa caaataacaa aaagaagatc aaaacaaaaa 1561 aatttatata cacacaaaaa aattgattag gactttttct acaaatccaa aaaaacaaat 1621 aataaaaaaa aaaaaaaaca caaaaccccc attccctcca atatcaaaat cagctttatt 1681 ctataaactc cagggaaatt aaaaacaaac cctttaacac atacaaaaaa agtattatcc 1741 tacagcagca ttattcgatt tccccatccc ctcctgttac cgataaggaa tgcagcgttg 1801 tccctatata catgaaatgc gagaacgttt attgaacgat cagaatcgtg aatcattacc 1861 acttgaacaa atggagcgag caaatctttt ggataacaga cagtcggctg aattacaaca 1921 gctgaatggc gatggatatc acacaagtcc agcccatcaa cgtacgcccc tggtgcctag 1981 agatttgggc gaagatttca acttggattt cgatgatgat ttccccatag aagtaagaag 2041 gcctaaaaat gctaaggtcg tttattcact aaaaccaaat tcgaataatc gcagttattt 2101 accggcgaat ataaccgtac atggcacata tcacaccaat atcataaccg gaccaattga 2161 attatggaca tcgctgttca ttgtaaccag cttggtgtat gccatcattt tgattgtggt 2221 ttgcattgct tacgttataa gtgatgtgac aacacatcgt ttgcccgtgc tgtactatga 2281 gagcttcttc acctatttgt acggagtcag catactcttc ctattgtatg tcttctgttt 2341 tctgttacag gaaagttcct gttgcaatgg cggcaacaat caaccgaaat ctcctaaaaa 2401 agaaaagaag tctaaaaaga aggaaaagga tcccgccgat tcgaaagatg cgaaaggttc 2461 taaggattct ggaaaaagtg gcaaacccag tccttatcag gaaaaatatc ctgtaaagaa 2521 acgtgattta gttaggcaaa cactaatacc ccaacaggac actcaagttg atgctgaagt 2581 agctgtaaca cctaaaaata cacgaaaacg taagacaacc cacagtgatt tgacccatgg 2641 cagcttcttt ttgcgagttg gagctattgc ttttggtctg ggcgccatga tctacattgg 2701 tttggagttt ggttcgttct ttgaaatccc cttcgattct ccctgccatc atatcttgat 2761 tggtgtaaat ccattgttgc aaatgatttt taccttcatg caaatgtact tcatctttat 2821 gaatgccaga ttgaatattc accgtttcaa ggtcattgcc cgttttggcc tcatgcatgt 2881 ggtggccact aacatatgtg tctggatacg caccctggtc aaggaatccc tgcttgaaat 2941 tactttgtat catcaacgtc gtgaatccga tcccaatgag tcttcaatag gtcaatctat 3001 acgtcagcat gccttacgtc acgccggcac tgtgttgcgc acccactatg gacccaatga 3061 agagttcgag gtattagatg gtgaagacct tttgcccaag aatgcctaca ccaccaacgg 3121 tgctctatcc aagatgttgg ccaaaacagt ggatggaatt tcgaaaactt tgggcatggg 3181 atccaatgaa attgctgatg tggtgaccac cactactacc accaccgcaa gaccggcatt 3241 taccaccccc agttatcaat ggcaaagcac tactgtggca cgcaagttga agaagtttat 3301 cactagtacc acggcggcgg caaccatggg tacctccccc actaccacct caacgacgac 3361 caccaccacc accacggctt tgccgatcac ctcaccattg gcgacaacaa cgaccacaga 3421 attacccttt aacagttacc agcatttgta tacgacgact gcctcacccg ctgctgcaat 3481 ggccgccgcc gccgatcact tggccgcctc caatggagga gcgtctgaag cggctgcaac 3541 tgctgcctca tcatttgata gctctcatgt ggcctctagt gtagcctcat ttttctcttc 3601 actcatctct agcaccccat cacccatcac aactaccacc accaacaatc ccatcactgt 3661 ctcctcctcc atgacggaca aagccaccga gaattcattt ggcctcatta acaatctcat 3721 ggaaaatagt ttccaaacct tttccggcat ctcccatccc gaagccgcta gtattgtgac 3781 ctttgaaaat tatgaaaatc tggacaacat ctatcccgcc gccctatcct ccaatgtggg 3841 taccttaaac tccactgcct gtggtcgtgt ggacattatg ggcaccattg tgtacgattc 3901 ggctccctat ctgtatccct tcatcataga atattccctc attggcgccg ttgtcctcta 3961 tgtgatgtgg aagcatattg gacgttatcc tggacgcatg aacgacgacg acttggaaca 4021 tcgcctagag gttatgctct cgcggcgtgc tgtggccatg gcccagcagg ctcgttctgg 4081 tcgcgtggac tgcgttggct cttcgaaagg tttattcttt ggtctattgt tgttggtggg 4141 tgctttgata tgtttgatac tcttcttcgt cttggtgcgt catcagcagt tctcgttgct 4201 ggccatctat ttggccgatg ccagtcattg tattttaatg gtatttgcca tattggccat 4261 aatcataggt tttataagag ttaagaatct gaaattccgc tgcgaggaac aatccaactt 4321 gaatgacatt ctcttgcgca tctccgcttt cggcctcttc acctattccg tattctctgt 4381 gatctcgggc agcctcaaag ttttggaaca cgaacccagc ctcttggtta ccaccaccag 4441 cgccgttgcc gttctgcagg tcatccttca gttgttgttc attgccgatg tttcccgccg 4501 tcgcgtccat ttgcccgaac atgatcgcag caaacccggt cgtcaaattg tcaccttcct 4561 tttgatctgc aatgtggcca tgttcgccat ttacactttc gatgctcaaa aagtatacgc 4621 caatcccgta agtagatatg tgcaattgga cttttatggc tttgtgccat gggccatcat 4681 acagcgtgta acactgccac tgtgcatttt ccatcgattc catagcgctg taacactagc 4741 cgagatctgg aagaccacct ataaagcgcg tttggagtaa atcaattaaa caccgatcga 4801 aacatcaccg ccaacaccac cacaacaaca acaacaacaa aattaccaca acaacacaac 4861 aaaacaaaaa cattcaatta catttaagga aattttttgg gaaaaaacca aaccaaacca 4921 acaacaaaag ctagtaaaga agaagaaaaa accgactttt ttgaaggcag aaaaaaaaat 4981 attatcagaa aatgttagtg aatcgtaaaa acaaaactca atattaatga aaa