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LOCUS XM_013247127 5045 bp mRNA linear INV 02-SEP-2023 (LOC106083856), transcript variant X9, mRNA. ACCESSION XM_013247127 VERSION XM_013247127.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013247127.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5045 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5045 /gene="LOC106083856" /note="proton channel OtopLc; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:106083856" CDS 1790..4792 /gene="LOC106083856" /codon_start=1 /product="uncharacterized protein LOC106083856 isoform X8" /protein_id="XP_013102581.2" /db_xref="GeneID:106083856" /translation="MQRCPYIHEMRERLLNDQNRESLPLEQMERANLLDNRQSAELQQ LNGDGYHTSPAHQRTPLVPRDLGEDFNLDFDDDFPIEVRRPKNAKTSLFIVTSLVYAI ILIVVCIAYVISDVTTHRLPVLYYESFFTYLYGVSILFLLYVFCFLLQESSCCNGGNN QPKSPKKEKKSKKKEKDPADSKDAKGSKDSGKSGKPSPYQALYGKLSTCCKGVAVFVY IVILIALIFHFILVFHWTVSMVVFLILLILHYLLIPKFLRASDTQVDAEVAVTPKNTR KRKTTHSDLTHGSFFLRVGAIAFGLGAMIYIGLEFGSFFEIPFDSPCHHILIGVNPLL QMIFTFMQMYFIFMNARLNIHRFKVIARFGLMHVVATNICVWIRTLVKESLLEITLYH QRRESDPNESSIGQSIRQHALRHAGTVLRTHYGPNEEFEVLDGEDLLPKNAYTTNGAL SKMLAKTVDGISKTLGMGSNEIADVVTTTTTTTARPAFTTPSYQWQSTTVARKLKKFI TSTTAAATMGTSPTTTSTTTTTTTTALPITSPLATTTTTELPFNSYQHLYTTTASPAA AMAAAADHLAASNGGASEAAATAASSFDSSHVASSVASFFSSLISSTPSPITTTTTNN PITVSSSMTDKATENSFGLINNLMENSFQTFSGISHPEAASIVTFENYENLDNIYPAA LSSNVGTLNSTACGRVDIMGTIVYDSAPYLYPFIIEYSLIGAVVLYVMWKHIGRYPGR MNDDDLEHRLEVMLSRRAVAMAQQARSGRVDCVGSSKGLFFGLLLLVGALICLILFFV LVRHQQFSLLAIYLADASHCILMVFAILAIIIGFIRVKNLKFRCEEQSNLNDILLRIS AFGLFTYSVFSVISGSLKVLEHEPSLLVTTTSAVAVLQVILQLLFIADVSRRRVHLPE HDRSKPGRQIVTFLLICNVAMFAIYTFDAQKVYANPVSRYVQLDFYGFVPWAIIQRVT LPLCIFHRFHSAVTLAEIWKTTYKARLE" polyA_site 5045 /gene="LOC106083856" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cggtagttcc aatcagtctg aaacgaattg ttgtgaacga tggaagaaaa taaaaacgtt 61 tgaaaaaaat ttggtgtaga acgttgagac agacatcata gtgaccgttt atttgtgtgt 121 gtagtaaatc aaatcagaat atagagtccg aatcagtggt gtttgctggt gagaattgtg 181 ttgtggcttg gtagtgcaaa aaaggaaata gtgaagtctg ccaggaagtt actaaaagag 241 agagtgaata aatgtgctaa atatttaata aaaaggaatt ggagttacat tgaaaatata 301 gaaaagaaaa acatatcaaa aaagagtttc tgacaaaacc aaagtttata tcaaaattgt 361 tgtaatacta tttaacaaaa aaaaaaaaaa gccccaagtg ccatagttgc cagagaagtc 421 tgcctataaa acaaaagtat tttttgcatc tttaaaacaa aaattaaata aaaaaaacaa 481 aatcctttcg cttttgctga gccatacaaa agtagccata attgactctt taatcaaacc 541 ctaaacaaaa tcaaagtcct ttgtgtctac aaaataacgg ctactcacac ctttgtttgt 601 tcgccaaaga gtaaaagtat caacaaacaa aactaaaaat atactgttaa tcatacacac 661 actcacacac actgtcctgt gtaagcgcat acaaacacag cgtgtctagg atgttcacaa 721 atccatcatc ttcatcatta tcatctctac ctttataact ggatgtcctc accttggcag 781 caggactgac acacagtgtg tttgttgttg ctattcaaag tgaagtacca aaaataaaca 841 acagcaaaaa attgagattt tatagcaaca gtgtttggtg gataggaata gaaagaaata 901 ccaaaacaaa cgcaaacaac aactaccacc ctcataaaag tttgcttgtt aacgaggaga 961 aaaaactgaa ttaaggaaag tagacataaa aaaggataca aaatttcccc ttgtataaaa 1021 ttgtttgcct tgctattaaa tcataagtgt tggcaccttt ccccccctta acgaaatcat 1081 cactgccaaa aattcatatc gaaattggta gtaaattatc gattaaaaaa aaaaaacaac 1141 caaacaacaa cctcgttaaa ttgtttgcaa ttgattgatt gatttcgtgc tggttgatta 1201 aatccaagtg cgtgtgtatg taatcggcta aatttcggtt tgacaataat taagtcatac 1261 ttaagcttga attcatcaac ctaaagtgga tgaaattaat tgtggacttt tttcaagtac 1321 aatacatcaa agtcatcatt gtcgtgctaa agaagctcat cgtgacaacc atataagcga 1381 gactgcctca atctatttgg acaatacaac tctacacacc taagattatt aactggttat 1441 caaaacaata aaattgacca aatttattct ccagcaaagc taaatggaat ttcaacaaaa 1501 tcgactgatt tttgactatt agatatacaa caaataacaa aaagaagatc aaaacaaaaa 1561 aatttatata cacacaaaaa aattgattag gactttttct acaaatccaa aaaaacaaat 1621 aataaaaaaa aaaaaaaaca caaaaccccc attccctcca atatcaaaat cagctttatt 1681 ctataaactc cagggaaatt aaaaacaaac cctttaacac atacaaaaaa agtattatcc 1741 tacagcagca ttattcgatt tccccatccc ctcctgttac cgataaggaa tgcagcgttg 1801 tccctatata catgaaatgc gagaacgttt attgaacgat cagaatcgtg aatcattacc 1861 acttgaacaa atggagcgag caaatctttt ggataacaga cagtcggctg aattacaaca 1921 gctgaatggc gatggatatc acacaagtcc agcccatcaa cgtacgcccc tggtgcctag 1981 agatttgggc gaagatttca acttggattt cgatgatgat ttccccatag aagtaagaag 2041 gcctaaaaat gctaagacat cgctgttcat tgtaaccagc ttggtgtatg ccatcatttt 2101 gattgtggtt tgcattgctt acgttataag tgatgtgaca acacatcgtt tgcccgtgct 2161 gtactatgag agcttcttca cctatttgta cggagtcagc atactcttcc tattgtatgt 2221 cttctgtttt ctgttacagg aaagttcctg ttgcaatggc ggcaacaatc aaccgaaatc 2281 tcctaaaaaa gaaaagaagt ctaaaaagaa ggaaaaggat cccgccgatt cgaaagatgc 2341 gaaaggttct aaggattctg gaaaaagtgg caaacccagt ccttatcagg ccctgtatgg 2401 aaagctgagc acttgttgca aaggggttgc cgtttttgtt tacattgtta tattgattgc 2461 cctaatcttc cattttatac tggttttcca ttggactgtc tcaatggtag tttttcttat 2521 actgttaata cttcactatc tcttgatacc gaaattctta cgtgcgtcgg acactcaagt 2581 tgatgctgaa gtagctgtaa cacctaaaaa tacacgaaaa cgtaagacaa cccacagtga 2641 tttgacccat ggcagcttct ttttgcgagt tggagctatt gcttttggtc tgggcgccat 2701 gatctacatt ggtttggagt ttggttcgtt ctttgaaatc cccttcgatt ctccctgcca 2761 tcatatcttg attggtgtaa atccattgtt gcaaatgatt tttaccttca tgcaaatgta 2821 cttcatcttt atgaatgcca gattgaatat tcaccgtttc aaggtcattg cccgttttgg 2881 cctcatgcat gtggtggcca ctaacatatg tgtctggata cgcaccctgg tcaaggaatc 2941 cctgcttgaa attactttgt atcatcaacg tcgtgaatcc gatcccaatg agtcttcaat 3001 aggtcaatct atacgtcagc atgccttacg tcacgccggc actgtgttgc gcacccacta 3061 tggacccaat gaagagttcg aggtattaga tggtgaagac cttttgccca agaatgccta 3121 caccaccaac ggtgctctat ccaagatgtt ggccaaaaca gtggatggaa tttcgaaaac 3181 tttgggcatg ggatccaatg aaattgctga tgtggtgacc accactacta ccaccaccgc 3241 aagaccggca tttaccaccc ccagttatca atggcaaagc actactgtgg cacgcaagtt 3301 gaagaagttt atcactagta ccacggcggc ggcaaccatg ggtacctccc ccactaccac 3361 ctcaacgacg accaccacca ccaccacggc tttgccgatc acctcaccat tggcgacaac 3421 aacgaccaca gaattaccct ttaacagtta ccagcatttg tatacgacga ctgcctcacc 3481 cgctgctgca atggccgccg ccgccgatca cttggccgcc tccaatggag gagcgtctga 3541 agcggctgca actgctgcct catcatttga tagctctcat gtggcctcta gtgtagcctc 3601 atttttctct tcactcatct ctagcacccc atcacccatc acaactacca ccaccaacaa 3661 tcccatcact gtctcctcct ccatgacgga caaagccacc gagaattcat ttggcctcat 3721 taacaatctc atggaaaata gtttccaaac cttttccggc atctcccatc ccgaagccgc 3781 tagtattgtg acctttgaaa attatgaaaa tctggacaac atctatcccg ccgccctatc 3841 ctccaatgtg ggtaccttaa actccactgc ctgtggtcgt gtggacatta tgggcaccat 3901 tgtgtacgat tcggctccct atctgtatcc cttcatcata gaatattccc tcattggcgc 3961 cgttgtcctc tatgtgatgt ggaagcatat tggacgttat cctggacgca tgaacgacga 4021 cgacttggaa catcgcctag aggttatgct ctcgcggcgt gctgtggcca tggcccagca 4081 ggctcgttct ggtcgcgtgg actgcgttgg ctcttcgaaa ggtttattct ttggtctatt 4141 gttgttggtg ggtgctttga tatgtttgat actcttcttc gtcttggtgc gtcatcagca 4201 gttctcgttg ctggccatct atttggccga tgccagtcat tgtattttaa tggtatttgc 4261 catattggcc ataatcatag gttttataag agttaagaat ctgaaattcc gctgcgagga 4321 acaatccaac ttgaatgaca ttctcttgcg catctccgct ttcggcctct tcacctattc 4381 cgtattctct gtgatctcgg gcagcctcaa agttttggaa cacgaaccca gcctcttggt 4441 taccaccacc agcgccgttg ccgttctgca ggtcatcctt cagttgttgt tcattgccga 4501 tgtttcccgc cgtcgcgtcc atttgcccga acatgatcgc agcaaacccg gtcgtcaaat 4561 tgtcaccttc cttttgatct gcaatgtggc catgttcgcc atttacactt tcgatgctca 4621 aaaagtatac gccaatcccg taagtagata tgtgcaattg gacttttatg gctttgtgcc 4681 atgggccatc atacagcgtg taacactgcc actgtgcatt ttccatcgat tccatagcgc 4741 tgtaacacta gccgagatct ggaagaccac ctataaagcg cgtttggagt aaatcaatta 4801 aacaccgatc gaaacatcac cgccaacacc accacaacaa caacaacaac aaaattacca 4861 caacaacaca acaaaacaaa aacattcaat tacatttaag gaaatttttt gggaaaaaac 4921 caaaccaaac caacaacaaa agctagtaaa gaagaagaaa aaaccgactt ttttgaaggc 4981 agaaaaaaaa atattatcag aaaatgttag tgaatcgtaa aaacaaaact caatattaat 5041 gaaaa