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LOCUS XM_013247126 5051 bp mRNA linear INV 02-SEP-2023 (LOC106083856), transcript variant X8, mRNA. ACCESSION XM_013247126 VERSION XM_013247126.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013247126.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5051 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5051 /gene="LOC106083856" /note="proton channel OtopLc; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:106083856" CDS 1790..4798 /gene="LOC106083856" /codon_start=1 /product="proton channel OtopLc isoform X7" /protein_id="XP_013102580.2" /db_xref="GeneID:106083856" /translation="MQRCPYIHEMRERLLNDQNRESLPLEQMERANLLDNRQSAELQQ VGTIVKLNGDGYHTSPAHQRTPLVPRDLGEDFNLDFDDDFPIEVRRPKNAKVVYSLKP NSNNRSYLPANITVHGTYHTNIITGPIELWTSLFIVTSLVYAIILIVVCIAYVISDVT THRLPVLYYESFFTYLYGVSILFLLYVFCFLLQESSCCNGGNNQPKSPKKEKKSKKKE KDPADSKDAKGSKDSGKSGKPSPYQEKYPVKKRDLVRQTLIPQQDTQVDAEVAVTPKN TRKRKTTHSDLTHGSFFLRVGAIAFGLGAMIYIGLEFGSFFEIPFDSPCHHILIGVNP LLQMIFTFMQMYFIFMNARLNIHRFKVIARFGLMHVVATNICVWIRTLVKESLLEITL YHQRRESDPNESSIGQSIRQHALRHAGTVLRTHYGPNEEFEVLDGEDLLPKNAYTTNG ALSKMLAKTVDGISKTLGMGSNEIADVVTTTTTTTARPAFTTPSYQWQSTTVARKLKK FITSTTAAATMGTSPTTTSTTTTTTTTALPITSPLATTTTTELPFNSYQHLYTTTASP AAAMAAAADHLAASNGGASEAAATAASSFDSSHVASSVASFFSSLISSTPSPITTTTT NNPITVSSSMTDKATENSFGLINNLMENSFQTFSGISHPEAASIVTFENYENLDNIYP AALSSNVGTLNSTACGRVDIMGTIVYDSAPYLYPFIIEYSLIGAVVLYVMWKHIGRYP GRMNDDDLEHRLEVMLSRRAVAMAQQARSGRVDCVGSSKGLFFGLLLLVGALICLILF FVLVRHQQFSLLAIYLADASHCILMVFAILAIIIGFIRVKNLKFRCEEQSNLNDILLR ISAFGLFTYSVFSVISGSLKVLEHEPSLLVTTTSAVAVLQVILQLLFIADVSRRRVHL PEHDRSKPGRQIVTFLLICNVAMFAIYTFDAQKVYANPVSRYVQLDFYGFVPWAIIQR VTLPLCIFHRFHSAVTLAEIWKTTYKARLE" polyA_site 5051 /gene="LOC106083856" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cggtagttcc aatcagtctg aaacgaattg ttgtgaacga tggaagaaaa taaaaacgtt 61 tgaaaaaaat ttggtgtaga acgttgagac agacatcata gtgaccgttt atttgtgtgt 121 gtagtaaatc aaatcagaat atagagtccg aatcagtggt gtttgctggt gagaattgtg 181 ttgtggcttg gtagtgcaaa aaaggaaata gtgaagtctg ccaggaagtt actaaaagag 241 agagtgaata aatgtgctaa atatttaata aaaaggaatt ggagttacat tgaaaatata 301 gaaaagaaaa acatatcaaa aaagagtttc tgacaaaacc aaagtttata tcaaaattgt 361 tgtaatacta tttaacaaaa aaaaaaaaaa gccccaagtg ccatagttgc cagagaagtc 421 tgcctataaa acaaaagtat tttttgcatc tttaaaacaa aaattaaata aaaaaaacaa 481 aatcctttcg cttttgctga gccatacaaa agtagccata attgactctt taatcaaacc 541 ctaaacaaaa tcaaagtcct ttgtgtctac aaaataacgg ctactcacac ctttgtttgt 601 tcgccaaaga gtaaaagtat caacaaacaa aactaaaaat atactgttaa tcatacacac 661 actcacacac actgtcctgt gtaagcgcat acaaacacag cgtgtctagg atgttcacaa 721 atccatcatc ttcatcatta tcatctctac ctttataact ggatgtcctc accttggcag 781 caggactgac acacagtgtg tttgttgttg ctattcaaag tgaagtacca aaaataaaca 841 acagcaaaaa attgagattt tatagcaaca gtgtttggtg gataggaata gaaagaaata 901 ccaaaacaaa cgcaaacaac aactaccacc ctcataaaag tttgcttgtt aacgaggaga 961 aaaaactgaa ttaaggaaag tagacataaa aaaggataca aaatttcccc ttgtataaaa 1021 ttgtttgcct tgctattaaa tcataagtgt tggcaccttt ccccccctta acgaaatcat 1081 cactgccaaa aattcatatc gaaattggta gtaaattatc gattaaaaaa aaaaaacaac 1141 caaacaacaa cctcgttaaa ttgtttgcaa ttgattgatt gatttcgtgc tggttgatta 1201 aatccaagtg cgtgtgtatg taatcggcta aatttcggtt tgacaataat taagtcatac 1261 ttaagcttga attcatcaac ctaaagtgga tgaaattaat tgtggacttt tttcaagtac 1321 aatacatcaa agtcatcatt gtcgtgctaa agaagctcat cgtgacaacc atataagcga 1381 gactgcctca atctatttgg acaatacaac tctacacacc taagattatt aactggttat 1441 caaaacaata aaattgacca aatttattct ccagcaaagc taaatggaat ttcaacaaaa 1501 tcgactgatt tttgactatt agatatacaa caaataacaa aaagaagatc aaaacaaaaa 1561 aatttatata cacacaaaaa aattgattag gactttttct acaaatccaa aaaaacaaat 1621 aataaaaaaa aaaaaaaaca caaaaccccc attccctcca atatcaaaat cagctttatt 1681 ctataaactc cagggaaatt aaaaacaaac cctttaacac atacaaaaaa agtattatcc 1741 tacagcagca ttattcgatt tccccatccc ctcctgttac cgataaggaa tgcagcgttg 1801 tccctatata catgaaatgc gagaacgttt attgaacgat cagaatcgtg aatcattacc 1861 acttgaacaa atggagcgag caaatctttt ggataacaga cagtcggctg aattacaaca 1921 ggtcgggact atagtcaagc tgaatggcga tggatatcac acaagtccag cccatcaacg 1981 tacgcccctg gtgcctagag atttgggcga agatttcaac ttggatttcg atgatgattt 2041 ccccatagaa gtaagaaggc ctaaaaatgc taaggtcgtt tattcactaa aaccaaattc 2101 gaataatcgc agttatttac cggcgaatat aaccgtacat ggcacatatc acaccaatat 2161 cataaccgga ccaattgaat tatggacatc gctgttcatt gtaaccagct tggtgtatgc 2221 catcattttg attgtggttt gcattgctta cgttataagt gatgtgacaa cacatcgttt 2281 gcccgtgctg tactatgaga gcttcttcac ctatttgtac ggagtcagca tactcttcct 2341 attgtatgtc ttctgttttc tgttacagga aagttcctgt tgcaatggcg gcaacaatca 2401 accgaaatct cctaaaaaag aaaagaagtc taaaaagaag gaaaaggatc ccgccgattc 2461 gaaagatgcg aaaggttcta aggattctgg aaaaagtggc aaacccagtc cttatcagga 2521 aaaatatcct gtaaagaaac gtgatttagt taggcaaaca ctaatacccc aacaggacac 2581 tcaagttgat gctgaagtag ctgtaacacc taaaaataca cgaaaacgta agacaaccca 2641 cagtgatttg acccatggca gcttcttttt gcgagttgga gctattgctt ttggtctggg 2701 cgccatgatc tacattggtt tggagtttgg ttcgttcttt gaaatcccct tcgattctcc 2761 ctgccatcat atcttgattg gtgtaaatcc attgttgcaa atgattttta ccttcatgca 2821 aatgtacttc atctttatga atgccagatt gaatattcac cgtttcaagg tcattgcccg 2881 ttttggcctc atgcatgtgg tggccactaa catatgtgtc tggatacgca ccctggtcaa 2941 ggaatccctg cttgaaatta ctttgtatca tcaacgtcgt gaatccgatc ccaatgagtc 3001 ttcaataggt caatctatac gtcagcatgc cttacgtcac gccggcactg tgttgcgcac 3061 ccactatgga cccaatgaag agttcgaggt attagatggt gaagaccttt tgcccaagaa 3121 tgcctacacc accaacggtg ctctatccaa gatgttggcc aaaacagtgg atggaatttc 3181 gaaaactttg ggcatgggat ccaatgaaat tgctgatgtg gtgaccacca ctactaccac 3241 caccgcaaga ccggcattta ccacccccag ttatcaatgg caaagcacta ctgtggcacg 3301 caagttgaag aagtttatca ctagtaccac ggcggcggca accatgggta cctcccccac 3361 taccacctca acgacgacca ccaccaccac cacggctttg ccgatcacct caccattggc 3421 gacaacaacg accacagaat taccctttaa cagttaccag catttgtata cgacgactgc 3481 ctcacccgct gctgcaatgg ccgccgccgc cgatcacttg gccgcctcca atggaggagc 3541 gtctgaagcg gctgcaactg ctgcctcatc atttgatagc tctcatgtgg cctctagtgt 3601 agcctcattt ttctcttcac tcatctctag caccccatca cccatcacaa ctaccaccac 3661 caacaatccc atcactgtct cctcctccat gacggacaaa gccaccgaga attcatttgg 3721 cctcattaac aatctcatgg aaaatagttt ccaaaccttt tccggcatct cccatcccga 3781 agccgctagt attgtgacct ttgaaaatta tgaaaatctg gacaacatct atcccgccgc 3841 cctatcctcc aatgtgggta ccttaaactc cactgcctgt ggtcgtgtgg acattatggg 3901 caccattgtg tacgattcgg ctccctatct gtatcccttc atcatagaat attccctcat 3961 tggcgccgtt gtcctctatg tgatgtggaa gcatattgga cgttatcctg gacgcatgaa 4021 cgacgacgac ttggaacatc gcctagaggt tatgctctcg cggcgtgctg tggccatggc 4081 ccagcaggct cgttctggtc gcgtggactg cgttggctct tcgaaaggtt tattctttgg 4141 tctattgttg ttggtgggtg ctttgatatg tttgatactc ttcttcgtct tggtgcgtca 4201 tcagcagttc tcgttgctgg ccatctattt ggccgatgcc agtcattgta ttttaatggt 4261 atttgccata ttggccataa tcataggttt tataagagtt aagaatctga aattccgctg 4321 cgaggaacaa tccaacttga atgacattct cttgcgcatc tccgctttcg gcctcttcac 4381 ctattccgta ttctctgtga tctcgggcag cctcaaagtt ttggaacacg aacccagcct 4441 cttggttacc accaccagcg ccgttgccgt tctgcaggtc atccttcagt tgttgttcat 4501 tgccgatgtt tcccgccgtc gcgtccattt gcccgaacat gatcgcagca aacccggtcg 4561 tcaaattgtc accttccttt tgatctgcaa tgtggccatg ttcgccattt acactttcga 4621 tgctcaaaaa gtatacgcca atcccgtaag tagatatgtg caattggact tttatggctt 4681 tgtgccatgg gccatcatac agcgtgtaac actgccactg tgcattttcc atcgattcca 4741 tagcgctgta acactagccg agatctggaa gaccacctat aaagcgcgtt tggagtaaat 4801 caattaaaca ccgatcgaaa catcaccgcc aacaccacca caacaacaac aacaacaaaa 4861 ttaccacaac aacacaacaa aacaaaaaca ttcaattaca tttaaggaaa ttttttggga 4921 aaaaaccaaa ccaaaccaac aacaaaagct agtaaagaag aagaaaaaac cgactttttt 4981 gaaggcagaa aaaaaaatat tatcagaaaa tgttagtgaa tcgtaaaaac aaaactcaat 5041 attaatgaaa a