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LOCUS XM_013247122 5159 bp mRNA linear INV 02-SEP-2023 (LOC106083856), transcript variant X4, mRNA. ACCESSION XM_013247122 VERSION XM_013247122.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013247122.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5159 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5159 /gene="LOC106083856" /note="proton channel OtopLc; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:106083856" CDS 1790..4906 /gene="LOC106083856" /codon_start=1 /product="uncharacterized protein LOC106083856 isoform X3" /protein_id="XP_013102576.2" /db_xref="GeneID:106083856" /translation="MQRCPYIHEMRERLLNDQNRESLPLEQMERANLLDNRQSAELQQ VGTIVKLNGDGYHTSPAHQRTPLVPRDLGEDFNLDFDDDFPIEVRRPKNAKVVYSLKP NSNNRSYLPANITVHGTYHTNIITGPIELWTSLFIVTSLVYAIILIVVCIAYVISDVT THRLPVLYYESFFTYLYGVSILFLLYVFCFLLQESSCCNGGNNQPKSPKKEKKSKKKE KDPADSKDAKGSKDSGKSGKPSPYQLSTCCKGVAVFVYIVILIALIFHFILVFHWTVS MVVFLILLILHYLLIPKFLRASDTQVDAEVAVTPKNTRKRKTTHSDLTHGSFFLRVGA IAFGLGAMIYIGLEFGSFFEIPFDSPCHHILIGVNPLLQMIFTFMQMYFIFMNARLNI HRFKVIARFGLMHVVATNICVWIRTLVKESLLEITLYHQRRESDPNESSIGQSIRQHA LRHAGTVLRTHYGPNEEFEVLDGEDLLPKNAYTTNGALSKMLAKTVDGISKTLGMGSN EIADVVTTTTTTTARPAFTTPSYQWQSTTVARKLKKFITSTTAAATMGTSPTTTSTTT TTTTTALPITSPLATTTTTELPFNSYQHLYTTTASPAAAMAAAADHLAASNGGASEAA ATAASSFDSSHVASSVASFFSSLISSTPSPITTTTTNNPITVSSSMTDKATENSFGLI NNLMENSFQTFSGISHPEAASIVTFENYENLDNIYPAALSSNVGTLNSTACGRVDIMG TIVYDSAPYLYPFIIEYSLIGAVVLYVMWKHIGRYPGRMNDDDLEHRLEVMLSRRAVA MAQQARSGRVDCVGSSKGLFFGLLLLVGALICLILFFVLVRHQQFSLLAIYLADASHC ILMVFAILAIIIGFIRVKNLKFRCEEQSNLNDILLRISAFGLFTYSVFSVISGSLKVL EHEPSLLVTTTSAVAVLQVILQLLFIADVSRRRVHLPEHDRSKPGRQIVTFLLICNVA MFAIYTFDAQKVYANPVSRYVQLDFYGFVPWAIIQRVTLPLCIFHRFHSAVTLAEIWK TTYKARLE" polyA_site 5159 /gene="LOC106083856" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cggtagttcc aatcagtctg aaacgaattg ttgtgaacga tggaagaaaa taaaaacgtt 61 tgaaaaaaat ttggtgtaga acgttgagac agacatcata gtgaccgttt atttgtgtgt 121 gtagtaaatc aaatcagaat atagagtccg aatcagtggt gtttgctggt gagaattgtg 181 ttgtggcttg gtagtgcaaa aaaggaaata gtgaagtctg ccaggaagtt actaaaagag 241 agagtgaata aatgtgctaa atatttaata aaaaggaatt ggagttacat tgaaaatata 301 gaaaagaaaa acatatcaaa aaagagtttc tgacaaaacc aaagtttata tcaaaattgt 361 tgtaatacta tttaacaaaa aaaaaaaaaa gccccaagtg ccatagttgc cagagaagtc 421 tgcctataaa acaaaagtat tttttgcatc tttaaaacaa aaattaaata aaaaaaacaa 481 aatcctttcg cttttgctga gccatacaaa agtagccata attgactctt taatcaaacc 541 ctaaacaaaa tcaaagtcct ttgtgtctac aaaataacgg ctactcacac ctttgtttgt 601 tcgccaaaga gtaaaagtat caacaaacaa aactaaaaat atactgttaa tcatacacac 661 actcacacac actgtcctgt gtaagcgcat acaaacacag cgtgtctagg atgttcacaa 721 atccatcatc ttcatcatta tcatctctac ctttataact ggatgtcctc accttggcag 781 caggactgac acacagtgtg tttgttgttg ctattcaaag tgaagtacca aaaataaaca 841 acagcaaaaa attgagattt tatagcaaca gtgtttggtg gataggaata gaaagaaata 901 ccaaaacaaa cgcaaacaac aactaccacc ctcataaaag tttgcttgtt aacgaggaga 961 aaaaactgaa ttaaggaaag tagacataaa aaaggataca aaatttcccc ttgtataaaa 1021 ttgtttgcct tgctattaaa tcataagtgt tggcaccttt ccccccctta acgaaatcat 1081 cactgccaaa aattcatatc gaaattggta gtaaattatc gattaaaaaa aaaaaacaac 1141 caaacaacaa cctcgttaaa ttgtttgcaa ttgattgatt gatttcgtgc tggttgatta 1201 aatccaagtg cgtgtgtatg taatcggcta aatttcggtt tgacaataat taagtcatac 1261 ttaagcttga attcatcaac ctaaagtgga tgaaattaat tgtggacttt tttcaagtac 1321 aatacatcaa agtcatcatt gtcgtgctaa agaagctcat cgtgacaacc atataagcga 1381 gactgcctca atctatttgg acaatacaac tctacacacc taagattatt aactggttat 1441 caaaacaata aaattgacca aatttattct ccagcaaagc taaatggaat ttcaacaaaa 1501 tcgactgatt tttgactatt agatatacaa caaataacaa aaagaagatc aaaacaaaaa 1561 aatttatata cacacaaaaa aattgattag gactttttct acaaatccaa aaaaacaaat 1621 aataaaaaaa aaaaaaaaca caaaaccccc attccctcca atatcaaaat cagctttatt 1681 ctataaactc cagggaaatt aaaaacaaac cctttaacac atacaaaaaa agtattatcc 1741 tacagcagca ttattcgatt tccccatccc ctcctgttac cgataaggaa tgcagcgttg 1801 tccctatata catgaaatgc gagaacgttt attgaacgat cagaatcgtg aatcattacc 1861 acttgaacaa atggagcgag caaatctttt ggataacaga cagtcggctg aattacaaca 1921 ggtcgggact atagtcaagc tgaatggcga tggatatcac acaagtccag cccatcaacg 1981 tacgcccctg gtgcctagag atttgggcga agatttcaac ttggatttcg atgatgattt 2041 ccccatagaa gtaagaaggc ctaaaaatgc taaggtcgtt tattcactaa aaccaaattc 2101 gaataatcgc agttatttac cggcgaatat aaccgtacat ggcacatatc acaccaatat 2161 cataaccgga ccaattgaat tatggacatc gctgttcatt gtaaccagct tggtgtatgc 2221 catcattttg attgtggttt gcattgctta cgttataagt gatgtgacaa cacatcgttt 2281 gcccgtgctg tactatgaga gcttcttcac ctatttgtac ggagtcagca tactcttcct 2341 attgtatgtc ttctgttttc tgttacagga aagttcctgt tgcaatggcg gcaacaatca 2401 accgaaatct cctaaaaaag aaaagaagtc taaaaagaag gaaaaggatc ccgccgattc 2461 gaaagatgcg aaaggttcta aggattctgg aaaaagtggc aaacccagtc cttatcagct 2521 gagcacttgt tgcaaagggg ttgccgtttt tgtttacatt gttatattga ttgccctaat 2581 cttccatttt atactggttt tccattggac tgtctcaatg gtagtttttc ttatactgtt 2641 aatacttcac tatctcttga taccgaaatt cttacgtgcg tcggacactc aagttgatgc 2701 tgaagtagct gtaacaccta aaaatacacg aaaacgtaag acaacccaca gtgatttgac 2761 ccatggcagc ttctttttgc gagttggagc tattgctttt ggtctgggcg ccatgatcta 2821 cattggtttg gagtttggtt cgttctttga aatccccttc gattctccct gccatcatat 2881 cttgattggt gtaaatccat tgttgcaaat gatttttacc ttcatgcaaa tgtacttcat 2941 ctttatgaat gccagattga atattcaccg tttcaaggtc attgcccgtt ttggcctcat 3001 gcatgtggtg gccactaaca tatgtgtctg gatacgcacc ctggtcaagg aatccctgct 3061 tgaaattact ttgtatcatc aacgtcgtga atccgatccc aatgagtctt caataggtca 3121 atctatacgt cagcatgcct tacgtcacgc cggcactgtg ttgcgcaccc actatggacc 3181 caatgaagag ttcgaggtat tagatggtga agaccttttg cccaagaatg cctacaccac 3241 caacggtgct ctatccaaga tgttggccaa aacagtggat ggaatttcga aaactttggg 3301 catgggatcc aatgaaattg ctgatgtggt gaccaccact actaccacca ccgcaagacc 3361 ggcatttacc acccccagtt atcaatggca aagcactact gtggcacgca agttgaagaa 3421 gtttatcact agtaccacgg cggcggcaac catgggtacc tcccccacta ccacctcaac 3481 gacgaccacc accaccacca cggctttgcc gatcacctca ccattggcga caacaacgac 3541 cacagaatta ccctttaaca gttaccagca tttgtatacg acgactgcct cacccgctgc 3601 tgcaatggcc gccgccgccg atcacttggc cgcctccaat ggaggagcgt ctgaagcggc 3661 tgcaactgct gcctcatcat ttgatagctc tcatgtggcc tctagtgtag cctcattttt 3721 ctcttcactc atctctagca ccccatcacc catcacaact accaccacca acaatcccat 3781 cactgtctcc tcctccatga cggacaaagc caccgagaat tcatttggcc tcattaacaa 3841 tctcatggaa aatagtttcc aaaccttttc cggcatctcc catcccgaag ccgctagtat 3901 tgtgaccttt gaaaattatg aaaatctgga caacatctat cccgccgccc tatcctccaa 3961 tgtgggtacc ttaaactcca ctgcctgtgg tcgtgtggac attatgggca ccattgtgta 4021 cgattcggct ccctatctgt atcccttcat catagaatat tccctcattg gcgccgttgt 4081 cctctatgtg atgtggaagc atattggacg ttatcctgga cgcatgaacg acgacgactt 4141 ggaacatcgc ctagaggtta tgctctcgcg gcgtgctgtg gccatggccc agcaggctcg 4201 ttctggtcgc gtggactgcg ttggctcttc gaaaggttta ttctttggtc tattgttgtt 4261 ggtgggtgct ttgatatgtt tgatactctt cttcgtcttg gtgcgtcatc agcagttctc 4321 gttgctggcc atctatttgg ccgatgccag tcattgtatt ttaatggtat ttgccatatt 4381 ggccataatc ataggtttta taagagttaa gaatctgaaa ttccgctgcg aggaacaatc 4441 caacttgaat gacattctct tgcgcatctc cgctttcggc ctcttcacct attccgtatt 4501 ctctgtgatc tcgggcagcc tcaaagtttt ggaacacgaa cccagcctct tggttaccac 4561 caccagcgcc gttgccgttc tgcaggtcat ccttcagttg ttgttcattg ccgatgtttc 4621 ccgccgtcgc gtccatttgc ccgaacatga tcgcagcaaa cccggtcgtc aaattgtcac 4681 cttccttttg atctgcaatg tggccatgtt cgccatttac actttcgatg ctcaaaaagt 4741 atacgccaat cccgtaagta gatatgtgca attggacttt tatggctttg tgccatgggc 4801 catcatacag cgtgtaacac tgccactgtg cattttccat cgattccata gcgctgtaac 4861 actagccgag atctggaaga ccacctataa agcgcgtttg gagtaaatca attaaacacc 4921 gatcgaaaca tcaccgccaa caccaccaca acaacaacaa caacaaaatt accacaacaa 4981 cacaacaaaa caaaaacatt caattacatt taaggaaatt ttttgggaaa aaaccaaacc 5041 aaaccaacaa caaaagctag taaagaagaa gaaaaaaccg acttttttga aggcagaaaa 5101 aaaaatatta tcagaaaatg ttagtgaatc gtaaaaacaa aactcaatat taatgaaaa