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LOCUS XM_013247118 5174 bp mRNA linear INV 02-SEP-2023 (LOC106083856), transcript variant X1, mRNA. ACCESSION XM_013247118 VERSION XM_013247118.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013247118.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5174 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5174 /gene="LOC106083856" /note="proton channel OtopLc; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:106083856" CDS 1790..4921 /gene="LOC106083856" /codon_start=1 /product="uncharacterized protein LOC106083856 isoform X1" /protein_id="XP_013102572.2" /db_xref="GeneID:106083856" /translation="MQRCPYIHEMRERLLNDQNRESLPLEQMERANLLDNRQSAELQQ VGTIVKLNGDGYHTSPAHQRTPLVPRDLGEDFNLDFDDDFPIEVRRPKNAKVVYSLKP NSNNRSYLPANITVHGTYHTNIITGPIELWTSLFIVTSLVYAIILIVVCIAYVISDVT THRLPVLYYESFFTYLYGVSILFLLYVFCFLLQESSCCNGGNNQPKSPKKEKKSKKKE KDPADSKDAKGSKDSGKSGKPSPYQALYGKLSTCCKGVAVFVYIVILIALIFHFILVF HWTVSMVVFLILLILHYLLIPKFLRASDTQVDAEVAVTPKNTRKRKTTHSDLTHGSFF LRVGAIAFGLGAMIYIGLEFGSFFEIPFDSPCHHILIGVNPLLQMIFTFMQMYFIFMN ARLNIHRFKVIARFGLMHVVATNICVWIRTLVKESLLEITLYHQRRESDPNESSIGQS IRQHALRHAGTVLRTHYGPNEEFEVLDGEDLLPKNAYTTNGALSKMLAKTVDGISKTL GMGSNEIADVVTTTTTTTARPAFTTPSYQWQSTTVARKLKKFITSTTAAATMGTSPTT TSTTTTTTTTALPITSPLATTTTTELPFNSYQHLYTTTASPAAAMAAAADHLAASNGG ASEAAATAASSFDSSHVASSVASFFSSLISSTPSPITTTTTNNPITVSSSMTDKATEN SFGLINNLMENSFQTFSGISHPEAASIVTFENYENLDNIYPAALSSNVGTLNSTACGR VDIMGTIVYDSAPYLYPFIIEYSLIGAVVLYVMWKHIGRYPGRMNDDDLEHRLEVMLS RRAVAMAQQARSGRVDCVGSSKGLFFGLLLLVGALICLILFFVLVRHQQFSLLAIYLA DASHCILMVFAILAIIIGFIRVKNLKFRCEEQSNLNDILLRISAFGLFTYSVFSVISG SLKVLEHEPSLLVTTTSAVAVLQVILQLLFIADVSRRRVHLPEHDRSKPGRQIVTFLL ICNVAMFAIYTFDAQKVYANPVSRYVQLDFYGFVPWAIIQRVTLPLCIFHRFHSAVTL AEIWKTTYKARLE" polyA_site 5174 /gene="LOC106083856" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cggtagttcc aatcagtctg aaacgaattg ttgtgaacga tggaagaaaa taaaaacgtt 61 tgaaaaaaat ttggtgtaga acgttgagac agacatcata gtgaccgttt atttgtgtgt 121 gtagtaaatc aaatcagaat atagagtccg aatcagtggt gtttgctggt gagaattgtg 181 ttgtggcttg gtagtgcaaa aaaggaaata gtgaagtctg ccaggaagtt actaaaagag 241 agagtgaata aatgtgctaa atatttaata aaaaggaatt ggagttacat tgaaaatata 301 gaaaagaaaa acatatcaaa aaagagtttc tgacaaaacc aaagtttata tcaaaattgt 361 tgtaatacta tttaacaaaa aaaaaaaaaa gccccaagtg ccatagttgc cagagaagtc 421 tgcctataaa acaaaagtat tttttgcatc tttaaaacaa aaattaaata aaaaaaacaa 481 aatcctttcg cttttgctga gccatacaaa agtagccata attgactctt taatcaaacc 541 ctaaacaaaa tcaaagtcct ttgtgtctac aaaataacgg ctactcacac ctttgtttgt 601 tcgccaaaga gtaaaagtat caacaaacaa aactaaaaat atactgttaa tcatacacac 661 actcacacac actgtcctgt gtaagcgcat acaaacacag cgtgtctagg atgttcacaa 721 atccatcatc ttcatcatta tcatctctac ctttataact ggatgtcctc accttggcag 781 caggactgac acacagtgtg tttgttgttg ctattcaaag tgaagtacca aaaataaaca 841 acagcaaaaa attgagattt tatagcaaca gtgtttggtg gataggaata gaaagaaata 901 ccaaaacaaa cgcaaacaac aactaccacc ctcataaaag tttgcttgtt aacgaggaga 961 aaaaactgaa ttaaggaaag tagacataaa aaaggataca aaatttcccc ttgtataaaa 1021 ttgtttgcct tgctattaaa tcataagtgt tggcaccttt ccccccctta acgaaatcat 1081 cactgccaaa aattcatatc gaaattggta gtaaattatc gattaaaaaa aaaaaacaac 1141 caaacaacaa cctcgttaaa ttgtttgcaa ttgattgatt gatttcgtgc tggttgatta 1201 aatccaagtg cgtgtgtatg taatcggcta aatttcggtt tgacaataat taagtcatac 1261 ttaagcttga attcatcaac ctaaagtgga tgaaattaat tgtggacttt tttcaagtac 1321 aatacatcaa agtcatcatt gtcgtgctaa agaagctcat cgtgacaacc atataagcga 1381 gactgcctca atctatttgg acaatacaac tctacacacc taagattatt aactggttat 1441 caaaacaata aaattgacca aatttattct ccagcaaagc taaatggaat ttcaacaaaa 1501 tcgactgatt tttgactatt agatatacaa caaataacaa aaagaagatc aaaacaaaaa 1561 aatttatata cacacaaaaa aattgattag gactttttct acaaatccaa aaaaacaaat 1621 aataaaaaaa aaaaaaaaca caaaaccccc attccctcca atatcaaaat cagctttatt 1681 ctataaactc cagggaaatt aaaaacaaac cctttaacac atacaaaaaa agtattatcc 1741 tacagcagca ttattcgatt tccccatccc ctcctgttac cgataaggaa tgcagcgttg 1801 tccctatata catgaaatgc gagaacgttt attgaacgat cagaatcgtg aatcattacc 1861 acttgaacaa atggagcgag caaatctttt ggataacaga cagtcggctg aattacaaca 1921 ggtcgggact atagtcaagc tgaatggcga tggatatcac acaagtccag cccatcaacg 1981 tacgcccctg gtgcctagag atttgggcga agatttcaac ttggatttcg atgatgattt 2041 ccccatagaa gtaagaaggc ctaaaaatgc taaggtcgtt tattcactaa aaccaaattc 2101 gaataatcgc agttatttac cggcgaatat aaccgtacat ggcacatatc acaccaatat 2161 cataaccgga ccaattgaat tatggacatc gctgttcatt gtaaccagct tggtgtatgc 2221 catcattttg attgtggttt gcattgctta cgttataagt gatgtgacaa cacatcgttt 2281 gcccgtgctg tactatgaga gcttcttcac ctatttgtac ggagtcagca tactcttcct 2341 attgtatgtc ttctgttttc tgttacagga aagttcctgt tgcaatggcg gcaacaatca 2401 accgaaatct cctaaaaaag aaaagaagtc taaaaagaag gaaaaggatc ccgccgattc 2461 gaaagatgcg aaaggttcta aggattctgg aaaaagtggc aaacccagtc cttatcaggc 2521 cctgtatgga aagctgagca cttgttgcaa aggggttgcc gtttttgttt acattgttat 2581 attgattgcc ctaatcttcc attttatact ggttttccat tggactgtct caatggtagt 2641 ttttcttata ctgttaatac ttcactatct cttgataccg aaattcttac gtgcgtcgga 2701 cactcaagtt gatgctgaag tagctgtaac acctaaaaat acacgaaaac gtaagacaac 2761 ccacagtgat ttgacccatg gcagcttctt tttgcgagtt ggagctattg cttttggtct 2821 gggcgccatg atctacattg gtttggagtt tggttcgttc tttgaaatcc ccttcgattc 2881 tccctgccat catatcttga ttggtgtaaa tccattgttg caaatgattt ttaccttcat 2941 gcaaatgtac ttcatcttta tgaatgccag attgaatatt caccgtttca aggtcattgc 3001 ccgttttggc ctcatgcatg tggtggccac taacatatgt gtctggatac gcaccctggt 3061 caaggaatcc ctgcttgaaa ttactttgta tcatcaacgt cgtgaatccg atcccaatga 3121 gtcttcaata ggtcaatcta tacgtcagca tgccttacgt cacgccggca ctgtgttgcg 3181 cacccactat ggacccaatg aagagttcga ggtattagat ggtgaagacc ttttgcccaa 3241 gaatgcctac accaccaacg gtgctctatc caagatgttg gccaaaacag tggatggaat 3301 ttcgaaaact ttgggcatgg gatccaatga aattgctgat gtggtgacca ccactactac 3361 caccaccgca agaccggcat ttaccacccc cagttatcaa tggcaaagca ctactgtggc 3421 acgcaagttg aagaagttta tcactagtac cacggcggcg gcaaccatgg gtacctcccc 3481 cactaccacc tcaacgacga ccaccaccac caccacggct ttgccgatca cctcaccatt 3541 ggcgacaaca acgaccacag aattaccctt taacagttac cagcatttgt atacgacgac 3601 tgcctcaccc gctgctgcaa tggccgccgc cgccgatcac ttggccgcct ccaatggagg 3661 agcgtctgaa gcggctgcaa ctgctgcctc atcatttgat agctctcatg tggcctctag 3721 tgtagcctca tttttctctt cactcatctc tagcacccca tcacccatca caactaccac 3781 caccaacaat cccatcactg tctcctcctc catgacggac aaagccaccg agaattcatt 3841 tggcctcatt aacaatctca tggaaaatag tttccaaacc ttttccggca tctcccatcc 3901 cgaagccgct agtattgtga cctttgaaaa ttatgaaaat ctggacaaca tctatcccgc 3961 cgccctatcc tccaatgtgg gtaccttaaa ctccactgcc tgtggtcgtg tggacattat 4021 gggcaccatt gtgtacgatt cggctcccta tctgtatccc ttcatcatag aatattccct 4081 cattggcgcc gttgtcctct atgtgatgtg gaagcatatt ggacgttatc ctggacgcat 4141 gaacgacgac gacttggaac atcgcctaga ggttatgctc tcgcggcgtg ctgtggccat 4201 ggcccagcag gctcgttctg gtcgcgtgga ctgcgttggc tcttcgaaag gtttattctt 4261 tggtctattg ttgttggtgg gtgctttgat atgtttgata ctcttcttcg tcttggtgcg 4321 tcatcagcag ttctcgttgc tggccatcta tttggccgat gccagtcatt gtattttaat 4381 ggtatttgcc atattggcca taatcatagg ttttataaga gttaagaatc tgaaattccg 4441 ctgcgaggaa caatccaact tgaatgacat tctcttgcgc atctccgctt tcggcctctt 4501 cacctattcc gtattctctg tgatctcggg cagcctcaaa gttttggaac acgaacccag 4561 cctcttggtt accaccacca gcgccgttgc cgttctgcag gtcatccttc agttgttgtt 4621 cattgccgat gtttcccgcc gtcgcgtcca tttgcccgaa catgatcgca gcaaacccgg 4681 tcgtcaaatt gtcaccttcc ttttgatctg caatgtggcc atgttcgcca tttacacttt 4741 cgatgctcaa aaagtatacg ccaatcccgt aagtagatat gtgcaattgg acttttatgg 4801 ctttgtgcca tgggccatca tacagcgtgt aacactgcca ctgtgcattt tccatcgatt 4861 ccatagcgct gtaacactag ccgagatctg gaagaccacc tataaagcgc gtttggagta 4921 aatcaattaa acaccgatcg aaacatcacc gccaacacca ccacaacaac aacaacaaca 4981 aaattaccac aacaacacaa caaaacaaaa acattcaatt acatttaagg aaattttttg 5041 ggaaaaaacc aaaccaaacc aacaacaaaa gctagtaaag aagaagaaaa aaccgacttt 5101 tttgaaggca gaaaaaaaaa tattatcaga aaatgttagt gaatcgtaaa aacaaaactc 5161 aatattaatg aaaa