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LOCUS XM_013246683 4988 bp mRNA linear INV 02-SEP-2023 interruptus (LOC106083569), transcript variant X2, mRNA. ACCESSION XM_013246683 VERSION XM_013246683.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013246683.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4988 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4988 /gene="LOC106083569" /note="transcriptional activator cubitus interruptus; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins" /db_xref="GeneID:106083569" CDS 949..4869 /gene="LOC106083569" /codon_start=1 /product="transcriptional activator cubitus interruptus isoform X2" /protein_id="XP_013102137.2" /db_xref="GeneID:106083569" /translation="MADQWPYTDLQHLTSRRAAAVAASSFLSPLYSVMNCCNNTGDPG FGAMPISSTTRNREHGRDSPNAVTSTTSASTEPKSYVCDSSSPDMKPITSDAKVQNSI QCHEMPAAYRIPGYIEHLYSLQCLSPNASLHAGLSMNSSDYLRSCNMGSVRDLHPAIA VNLSAANNGYNFGLKNKSINSHSFIASRKRALSSSPYSDAFDINSMIRFSPNSLAAAM GGSCAGANVPNACYGHLSASNFSPIHSAMAPHLQQLQAHLLRVSAGLLHPLSSAHQVP APSMLPMDQKHLLSSKSDVLPVTPVKEEFSSEKDPSGKSHHEEPPRLPVEPISSSCSD VTLQEADSASAVENKKSRKCYTKFSGQCHENKNSKPQSEPSPNATPHYDCASADTTDL KDEPLDFEETNCHWKDCEIEFGNLEDLVRHINNHHIQNNKKTFVCRWENCSRGEKPFK AQYMLVVHMRRHTGEKPHKCTFEGCGKAYSRLENLKTHLRSHTGEKPYTCEYPGCTKA FSNASDRAKHQNRTHSNEKPYICNAPGCLKRYTDPSSLRKHVKSVHGAEFYANKRHKG FNENKYDGDDKLNEKNNHIREYFQGSSSSGSQSIKKEFNVNPSPKAHIRGMFQNPIIR SAAVAEVLEGEDNEWNGPMGGYEYAANSDFASNEESYWATYADGVDVAELPLVLRTMV GIGGPGDRMNSLGGGGGVGASRIAADTSPQRMRSRLQTKHFGAPSMGIGMRELNQRIT ELKMETNVEETTTVPSCTKQFSELDPSSQAMRRDSQNSNTSSYYCSMNSRRSSQCSHQ SSMSTIRPHTSFNAGSLYDPISPGCSRRSSQMYNMNTAQMNPIRERVDQDPMMAHMGQ GYRNDHHLNNPFVNVNKEKMSNLPPPPSSHLIAKHLHQLQCSLLSSTYLRHLRQNGRY SIPSTLRLSSVLPAKNKPLLDRRFSEAPKAVKLIMSCPSSFTYSLLTTQLVKAIEQVN RSRSAEARELMEVSLDHHPNEKINLDEVDEDELIENKLLVLPDEMLQYLNQVAKHAER NNAETQGMNTNQTRFLQPMHNSTMMPPNPPAANNGNNSHRNYDIYSYDGHHYMKYPPY YDCANYYSQYPMSTSHQKRESCPAAVTAATCANNDPVDSSMTSLVDWRTEQGQTAGVR HAPHEIQCNDISQSQMSPAVCTNNPAGTSAYNQYTSISSTTFHNESSTNPSYANNAGN AMQTDAYQRTLEYVQNCQSWLKSSNKNAPNENALYCDPNNPAMGPVAAAGGGVAPAAA AAAPVAGQTNIAASCTYPTNNMVINDMNSSLTSLFEEDLCFKLI" polyA_site 4988 /gene="LOC106083569" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 taacacgaaa ctgaaacagg ttatgtagag tgcccaactg ggccatgtta aatgctgtgc 61 accattgaag ttccacaaca aacttcttac cgccactcaa ctctaaacgg gggaaaaatg 121 agagcgaacg gcctaccatc gtatagagag agatcttgta ccaaaacaaa gagcgcgacg 181 aaacatcttt ataatgctgc gatgacatct ctctaacaac tcaattatct tctgtatacc 241 tacacacata ttagtgttgt ttttttttta tagccgatat aattaagcca tcacagcgtc 301 tattgtatac atacattcat atgtattttc tattgttttt gatcagctgc aattatttac 361 attcaacgaa gaaatggcta gcaactcctt cacaccttca acaatttagt aaagttaaaa 421 tacaaaatag ttgtgcgcaa aattctaaat gaaaagaaga catttcctgg accgcgagat 481 aagttcatta acgccgacag cgctctatca aattacacgc aacgacgacg gaagacatga 541 tcagatgaaa gcgtgcattg tgacaacgcg gtgacaacca aaagaacaaa gtgatcattt 601 ctttgaattc cattcggcca caaaatttat ttagcttttg gatgtggtcg aagattactc 661 tggttacatt tgtcggtgtt aaaaggcctg aagaagcgac caggatcccc aaacatttcg 721 aagggcatac aattgcacag tggccattta acagcagctg agaagaaaac caccaaaaat 781 aagttataaa atctaattcc aaaggtttgg aatctcaaga aaagaattaa ccttcgtaaa 841 ggctgtgcat taatcttgct aaggaggaag gtctatcatt ttcccacttg ggccatacta 901 caacagttgg ccttaggcaa aattctataa atcccttaga tttttgatat ggcagaccaa 961 tggccgtata ccgatttgca gcatttaaca tcgaggcgag cggcagctgt tgccgcatcg 1021 tctttcctct cacccctgta ttccgttatg aactgttgca acaacaccgg tgaccctggt 1081 tttggggcca tgcccatttc cagcaccacc agaaatcggg aacatggtcg cgattcgcca 1141 aatgctgtta ccagcacaac atcagcttcc accgaaccca aatcgtatgt gtgcgactcc 1201 tcgtcacccg acatgaaacc cattacatct gatgcaaagg tgcaaaattc aatacagtgc 1261 catgaaatgc cggccgccta caggattccc ggctacattg aacatttata ctcgctacag 1321 tgccttagtc ccaatgcctc actacatgct ggtttgagca tgaattccag cgattattta 1381 aggtcttgca atatgggctc cgtgagagat ctacatccgg ccatagcagt caacctgtca 1441 gcagcgaaca atggctataa ctttggtttg aaaaacaaga gcatcaactc gcattccttc 1501 atagcatcgc gtaaaagagc cctctcctcg tcaccctact cggatgcctt cgatatcaat 1561 tcgatgatac gtttctcacc gaattccttg gctgctgcca tgggtggttc ctgtgccggt 1621 gctaatgttc ccaatgcttg ttatggacat ttatcggcta gcaattttag tcccatacat 1681 tcggccatgg caccacattt acaacaatta caagcccatt tgttgagagt aagtgccggc 1741 ctgctacatc cattgtcttc ggcccatcag gtaccggctc ctagtatgct gcctatggat 1801 cagaaacatc tgctaagctc taagagtgat gtcctgccag ttacaccggt taaagaagaa 1861 ttctcaagtg aaaaggaccc cagcggaaaa agccatcatg aggaaccacc acgtcttcca 1921 gtcgaaccca tttcctcgtc atgtagtgat gtcacacttc aggaagctga cagtgcttca 1981 gctgtggaaa acaaaaaatc acgaaagtgc tatacaaaat tctctggcca atgccatgaa 2041 aacaaaaaca gcaaacctca aagtgaacct tcgcccaatg ccacaccaca ctatgattgt 2101 gccagtgcag ataccaccga cctgaaagat gaacctttgg actttgagga aaccaattgc 2161 cattggaagg attgtgaaat tgagtttggc aacttggaag acttggtgcg tcacatcaac 2221 aaccaccata tacaaaataa taagaaaact tttgtatgcc gctgggaaaa ctgttcgaga 2281 ggagaaaagc cttttaaggc acaatacatg ctggttgtgc atatgcgacg tcacacgggg 2341 gagaagccgc acaaatgcac gtttgaagga tgtggcaaag cttattctcg tttggaaaat 2401 ttaaaaacac acttgagatc ccacacagga gaaaaacctt acacttgcga atatccaggt 2461 tgcactaaag cttttagcaa tgccagcgat cgagcaaagc atcaaaaccg cacgcatagc 2521 aatgagaaac cttatatctg caatgccccg ggctgtttga agcgctacac tgatcccagc 2581 tcattgagga aacacgtgaa gagcgtgcat ggtgccgaat tctatgccaa taagcggcac 2641 aaaggcttca atgaaaacaa atacgatggc gatgataagt tgaatgagaa gaacaaccac 2701 atacgggaat atttccaagg cagcagcagc tcgggcagcc aaagcatcaa gaaagagttc 2761 aatgtgaatc cctcgcccaa agcacatata cgcggcatgt tccaaaatcc cattatcaga 2821 tcggctgcgg ttgccgaagt actcgaaggc gaagacaatg aatggaatgg cccaatgggt 2881 ggctatgagt atgcggccaa cagcgacttt gcctcgaacg aggagagcta ttgggcaaca 2941 tatgccgatg gggtggatgt agccgaactg ccactggtgc tgcgaacaat ggtgggcatt 3001 ggtggtcccg gtgaccgcat gaattcgctc ggaggtggag gaggagttgg ggcatcgaga 3061 attgccgcag atacttcacc gcaaagaatg cggtcacgtt tgcaaactaa acactttggg 3121 gctcccagca tgggcattgg catgagggaa cttaatcagc gtataaccga actgaaaatg 3181 gaaacaaatg ttgaggagac caccacagtg ccatcttgta caaaacagtt ttccgaactg 3241 gatccctcca gtcaggccat gcggcgagac agccaaaact cgaataccag cagctattat 3301 tgcagcatga acagtcggcg cagcagtcag tgttcacatc agtcttccat gtcgaccata 3361 aggccacata cttcgtttaa tgctggttca ttatatgatc ccatttcgcc gggatgttcg 3421 aggcgttcca gccaaatgta taacatgaat acggcgcaaa tgaatcccat aagggagcgt 3481 gtcgatcagg atcccatgat ggcccacatg ggccaaggct atagaaatga tcaccacctc 3541 aacaatccct ttgtcaatgt caacaaggag aaaatgtcaa atctaccccc tccaccttcg 3601 tcgcatttga tagcaaagca tttgcatcag ttgcagtgtt cgctactctc gtccacatat 3661 ttaagacatc taaggcaaaa tggacgctac tccataccca gtactttgag attgtcctca 3721 gtgctgccgg ctaagaataa gccattgttg gataggcgtt tctccgaggc tcccaaggca 3781 gtgaaattga ttatgtcctg cccatcttcc ttcacgtatt cactgttgac aacgcagctt 3841 gtcaaagcca tagaacaagt gaacaggtcc cggtccgccg aggccaggga acttatggag 3901 gtctctttgg atcaccatcc caatgagaag atcaacctcg atgaggtgga tgaggatgag 3961 ttgattgaga ataaattact agtcctgccc gacgagatgt tgcaatacct aaaccaagtg 4021 gccaagcatg ccgaacgcaa taacgccgag acacaaggca tgaacacaaa tcagacgaga 4081 tttttacagc ccatgcataa cagtacaatg atgcctccaa acccaccggc tgccaacaat 4141 ggcaataact cacataggaa ctacgatata tattcctatg atggccatca ctatatgaaa 4201 tatccgccat attacgactg tgccaattac tattcccaat atcccatgag tacaagtcac 4261 caaaagcgtg aaagttgtcc cgcagcagta acggcagcca cttgtgctaa caacgatcca 4321 gtcgacagct ccatgaccag cctagtggat tggagaactg aacaggggca aacggctgga 4381 gttcgccatg cgccccatga aatacaatgt aacgatatat cccaatcaca aatgtcaccg 4441 gctgtatgca ccaataatcc cgccggcacc agcgcctaca atcaatacac cagcatttcc 4501 tcaaccacct ttcacaatga gagcagtacc aatccctcat acgcgaacaa tgcgggcaat 4561 gccatgcaaa ctgatgccta tcagcgtact ctggaatatg tgcagaactg ccagagctgg 4621 ttgaagtcct ccaacaagaa tgctcccaat gagaatgctt tatattgcga ccccaacaat 4681 ccggctatgg gcccagttgc cgcagcaggg ggtggtgttg ctcctgctgc cgccgctgct 4741 gcccctgtgg ctggccagac aaatattgca gcaagctgta cttatcccac caacaacatg 4801 gtcatcaatg acatgaactc atcgctgact tctctgtttg aagaggatct atgcttcaaa 4861 ctgatataag tttacaaaat gacattattt ttacacaata tttcctaaag aactaaacta 4921 cttagtaagt actcgtactt tgtcatacaa gcataccgaa catacataca tacgaattca 4981 ttcattca