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LOCUS XM_013246682 5018 bp mRNA linear INV 02-SEP-2023 interruptus (LOC106083569), transcript variant X1, mRNA. ACCESSION XM_013246682 VERSION XM_013246682.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013246682.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5018 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5018 /gene="LOC106083569" /note="transcriptional activator cubitus interruptus; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins" /db_xref="GeneID:106083569" CDS 949..4899 /gene="LOC106083569" /codon_start=1 /product="transcriptional activator cubitus interruptus isoform X1" /protein_id="XP_013102136.2" /db_xref="GeneID:106083569" /translation="MADQWPYTDLQHLTSRRAAAVAASSFLSPLYSVMNCCNNTGDPG FGAMPISSTTRNREHGRDSPNAVTSTTSASTEPKSYVCDSSSPDMKPITSDAKVQNSI QCHEMPAAYRIPGYIEHLYSLQCLSPNASLHDKFPNKHFHIAGLSMNSSDYLRSCNMG SVRDLHPAIAVNLSAANNGYNFGLKNKSINSHSFIASRKRALSSSPYSDAFDINSMIR FSPNSLAAAMGGSCAGANVPNACYGHLSASNFSPIHSAMAPHLQQLQAHLLRVSAGLL HPLSSAHQVPAPSMLPMDQKHLLSSKSDVLPVTPVKEEFSSEKDPSGKSHHEEPPRLP VEPISSSCSDVTLQEADSASAVENKKSRKCYTKFSGQCHENKNSKPQSEPSPNATPHY DCASADTTDLKDEPLDFEETNCHWKDCEIEFGNLEDLVRHINNHHIQNNKKTFVCRWE NCSRGEKPFKAQYMLVVHMRRHTGEKPHKCTFEGCGKAYSRLENLKTHLRSHTGEKPY TCEYPGCTKAFSNASDRAKHQNRTHSNEKPYICNAPGCLKRYTDPSSLRKHVKSVHGA EFYANKRHKGFNENKYDGDDKLNEKNNHIREYFQGSSSSGSQSIKKEFNVNPSPKAHI RGMFQNPIIRSAAVAEVLEGEDNEWNGPMGGYEYAANSDFASNEESYWATYADGVDVA ELPLVLRTMVGIGGPGDRMNSLGGGGGVGASRIAADTSPQRMRSRLQTKHFGAPSMGI GMRELNQRITELKMETNVEETTTVPSCTKQFSELDPSSQAMRRDSQNSNTSSYYCSMN SRRSSQCSHQSSMSTIRPHTSFNAGSLYDPISPGCSRRSSQMYNMNTAQMNPIRERVD QDPMMAHMGQGYRNDHHLNNPFVNVNKEKMSNLPPPPSSHLIAKHLHQLQCSLLSSTY LRHLRQNGRYSIPSTLRLSSVLPAKNKPLLDRRFSEAPKAVKLIMSCPSSFTYSLLTT QLVKAIEQVNRSRSAEARELMEVSLDHHPNEKINLDEVDEDELIENKLLVLPDEMLQY LNQVAKHAERNNAETQGMNTNQTRFLQPMHNSTMMPPNPPAANNGNNSHRNYDIYSYD GHHYMKYPPYYDCANYYSQYPMSTSHQKRESCPAAVTAATCANNDPVDSSMTSLVDWR TEQGQTAGVRHAPHEIQCNDISQSQMSPAVCTNNPAGTSAYNQYTSISSTTFHNESST NPSYANNAGNAMQTDAYQRTLEYVQNCQSWLKSSNKNAPNENALYCDPNNPAMGPVAA AGGGVAPAAAAAAPVAGQTNIAASCTYPTNNMVINDMNSSLTSLFEEDLCFKLI" polyA_site 5018 /gene="LOC106083569" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 taacacgaaa ctgaaacagg ttatgtagag tgcccaactg ggccatgtta aatgctgtgc 61 accattgaag ttccacaaca aacttcttac cgccactcaa ctctaaacgg gggaaaaatg 121 agagcgaacg gcctaccatc gtatagagag agatcttgta ccaaaacaaa gagcgcgacg 181 aaacatcttt ataatgctgc gatgacatct ctctaacaac tcaattatct tctgtatacc 241 tacacacata ttagtgttgt ttttttttta tagccgatat aattaagcca tcacagcgtc 301 tattgtatac atacattcat atgtattttc tattgttttt gatcagctgc aattatttac 361 attcaacgaa gaaatggcta gcaactcctt cacaccttca acaatttagt aaagttaaaa 421 tacaaaatag ttgtgcgcaa aattctaaat gaaaagaaga catttcctgg accgcgagat 481 aagttcatta acgccgacag cgctctatca aattacacgc aacgacgacg gaagacatga 541 tcagatgaaa gcgtgcattg tgacaacgcg gtgacaacca aaagaacaaa gtgatcattt 601 ctttgaattc cattcggcca caaaatttat ttagcttttg gatgtggtcg aagattactc 661 tggttacatt tgtcggtgtt aaaaggcctg aagaagcgac caggatcccc aaacatttcg 721 aagggcatac aattgcacag tggccattta acagcagctg agaagaaaac caccaaaaat 781 aagttataaa atctaattcc aaaggtttgg aatctcaaga aaagaattaa ccttcgtaaa 841 ggctgtgcat taatcttgct aaggaggaag gtctatcatt ttcccacttg ggccatacta 901 caacagttgg ccttaggcaa aattctataa atcccttaga tttttgatat ggcagaccaa 961 tggccgtata ccgatttgca gcatttaaca tcgaggcgag cggcagctgt tgccgcatcg 1021 tctttcctct cacccctgta ttccgttatg aactgttgca acaacaccgg tgaccctggt 1081 tttggggcca tgcccatttc cagcaccacc agaaatcggg aacatggtcg cgattcgcca 1141 aatgctgtta ccagcacaac atcagcttcc accgaaccca aatcgtatgt gtgcgactcc 1201 tcgtcacccg acatgaaacc cattacatct gatgcaaagg tgcaaaattc aatacagtgc 1261 catgaaatgc cggccgccta caggattccc ggctacattg aacatttata ctcgctacag 1321 tgccttagtc ccaatgcctc actacatgac aaatttccta ataaacattt tcacatagct 1381 ggtttgagca tgaattccag cgattattta aggtcttgca atatgggctc cgtgagagat 1441 ctacatccgg ccatagcagt caacctgtca gcagcgaaca atggctataa ctttggtttg 1501 aaaaacaaga gcatcaactc gcattccttc atagcatcgc gtaaaagagc cctctcctcg 1561 tcaccctact cggatgcctt cgatatcaat tcgatgatac gtttctcacc gaattccttg 1621 gctgctgcca tgggtggttc ctgtgccggt gctaatgttc ccaatgcttg ttatggacat 1681 ttatcggcta gcaattttag tcccatacat tcggccatgg caccacattt acaacaatta 1741 caagcccatt tgttgagagt aagtgccggc ctgctacatc cattgtcttc ggcccatcag 1801 gtaccggctc ctagtatgct gcctatggat cagaaacatc tgctaagctc taagagtgat 1861 gtcctgccag ttacaccggt taaagaagaa ttctcaagtg aaaaggaccc cagcggaaaa 1921 agccatcatg aggaaccacc acgtcttcca gtcgaaccca tttcctcgtc atgtagtgat 1981 gtcacacttc aggaagctga cagtgcttca gctgtggaaa acaaaaaatc acgaaagtgc 2041 tatacaaaat tctctggcca atgccatgaa aacaaaaaca gcaaacctca aagtgaacct 2101 tcgcccaatg ccacaccaca ctatgattgt gccagtgcag ataccaccga cctgaaagat 2161 gaacctttgg actttgagga aaccaattgc cattggaagg attgtgaaat tgagtttggc 2221 aacttggaag acttggtgcg tcacatcaac aaccaccata tacaaaataa taagaaaact 2281 tttgtatgcc gctgggaaaa ctgttcgaga ggagaaaagc cttttaaggc acaatacatg 2341 ctggttgtgc atatgcgacg tcacacgggg gagaagccgc acaaatgcac gtttgaagga 2401 tgtggcaaag cttattctcg tttggaaaat ttaaaaacac acttgagatc ccacacagga 2461 gaaaaacctt acacttgcga atatccaggt tgcactaaag cttttagcaa tgccagcgat 2521 cgagcaaagc atcaaaaccg cacgcatagc aatgagaaac cttatatctg caatgccccg 2581 ggctgtttga agcgctacac tgatcccagc tcattgagga aacacgtgaa gagcgtgcat 2641 ggtgccgaat tctatgccaa taagcggcac aaaggcttca atgaaaacaa atacgatggc 2701 gatgataagt tgaatgagaa gaacaaccac atacgggaat atttccaagg cagcagcagc 2761 tcgggcagcc aaagcatcaa gaaagagttc aatgtgaatc cctcgcccaa agcacatata 2821 cgcggcatgt tccaaaatcc cattatcaga tcggctgcgg ttgccgaagt actcgaaggc 2881 gaagacaatg aatggaatgg cccaatgggt ggctatgagt atgcggccaa cagcgacttt 2941 gcctcgaacg aggagagcta ttgggcaaca tatgccgatg gggtggatgt agccgaactg 3001 ccactggtgc tgcgaacaat ggtgggcatt ggtggtcccg gtgaccgcat gaattcgctc 3061 ggaggtggag gaggagttgg ggcatcgaga attgccgcag atacttcacc gcaaagaatg 3121 cggtcacgtt tgcaaactaa acactttggg gctcccagca tgggcattgg catgagggaa 3181 cttaatcagc gtataaccga actgaaaatg gaaacaaatg ttgaggagac caccacagtg 3241 ccatcttgta caaaacagtt ttccgaactg gatccctcca gtcaggccat gcggcgagac 3301 agccaaaact cgaataccag cagctattat tgcagcatga acagtcggcg cagcagtcag 3361 tgttcacatc agtcttccat gtcgaccata aggccacata cttcgtttaa tgctggttca 3421 ttatatgatc ccatttcgcc gggatgttcg aggcgttcca gccaaatgta taacatgaat 3481 acggcgcaaa tgaatcccat aagggagcgt gtcgatcagg atcccatgat ggcccacatg 3541 ggccaaggct atagaaatga tcaccacctc aacaatccct ttgtcaatgt caacaaggag 3601 aaaatgtcaa atctaccccc tccaccttcg tcgcatttga tagcaaagca tttgcatcag 3661 ttgcagtgtt cgctactctc gtccacatat ttaagacatc taaggcaaaa tggacgctac 3721 tccataccca gtactttgag attgtcctca gtgctgccgg ctaagaataa gccattgttg 3781 gataggcgtt tctccgaggc tcccaaggca gtgaaattga ttatgtcctg cccatcttcc 3841 ttcacgtatt cactgttgac aacgcagctt gtcaaagcca tagaacaagt gaacaggtcc 3901 cggtccgccg aggccaggga acttatggag gtctctttgg atcaccatcc caatgagaag 3961 atcaacctcg atgaggtgga tgaggatgag ttgattgaga ataaattact agtcctgccc 4021 gacgagatgt tgcaatacct aaaccaagtg gccaagcatg ccgaacgcaa taacgccgag 4081 acacaaggca tgaacacaaa tcagacgaga tttttacagc ccatgcataa cagtacaatg 4141 atgcctccaa acccaccggc tgccaacaat ggcaataact cacataggaa ctacgatata 4201 tattcctatg atggccatca ctatatgaaa tatccgccat attacgactg tgccaattac 4261 tattcccaat atcccatgag tacaagtcac caaaagcgtg aaagttgtcc cgcagcagta 4321 acggcagcca cttgtgctaa caacgatcca gtcgacagct ccatgaccag cctagtggat 4381 tggagaactg aacaggggca aacggctgga gttcgccatg cgccccatga aatacaatgt 4441 aacgatatat cccaatcaca aatgtcaccg gctgtatgca ccaataatcc cgccggcacc 4501 agcgcctaca atcaatacac cagcatttcc tcaaccacct ttcacaatga gagcagtacc 4561 aatccctcat acgcgaacaa tgcgggcaat gccatgcaaa ctgatgccta tcagcgtact 4621 ctggaatatg tgcagaactg ccagagctgg ttgaagtcct ccaacaagaa tgctcccaat 4681 gagaatgctt tatattgcga ccccaacaat ccggctatgg gcccagttgc cgcagcaggg 4741 ggtggtgttg ctcctgctgc cgccgctgct gcccctgtgg ctggccagac aaatattgca 4801 gcaagctgta cttatcccac caacaacatg gtcatcaatg acatgaactc atcgctgact 4861 tctctgtttg aagaggatct atgcttcaaa ctgatataag tttacaaaat gacattattt 4921 ttacacaata tttcctaaag aactaaacta cttagtaagt actcgtactt tgtcatacaa 4981 gcataccgaa catacataca tacgaattca ttcattca