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LOCUS XM_013246654 3245 bp mRNA linear INV 02-SEP-2023 kinase type II alpha chain (LOC106083560), mRNA. ACCESSION XM_013246654 VERSION XM_013246654.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq; corrected model. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) and transcript sequence (GDIM01003640.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013246654.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 3 indels assembly gap :: added 363 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-481 OY720438.1 37703343-37703823 c 482-705 OY720438.1 37630733-37630956 c 706-1883 OY720438.1 37628474-37629651 c 1884-2267 OY720438.1 37628089-37628472 c 2268-2268 "N" 1-1 2269-2738 OY720438.1 37627619-37628088 c 2739-2882 OY720438.1 37627474-37627617 c 2883-3245 GDIM01003640.1 1108-1470 FEATURES Location/Qualifiers source 1..3245 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..3245 /gene="LOC106083560" /note="calcium/calmodulin-dependent protein kinase type II alpha chain; The sequence of the model RefSeq transcript was modified relative to its source genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 2 codons; added 363 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 Proteins" /db_xref="GeneID:106083560" CDS 1776..3245 /gene="LOC106083560" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 2 codons; added 363 bases not found in genome assembly" /codon_start=1 /product="LOW QUALITY PROTEIN: calcium/calmodulin-dependent protein kinase type II alpha chain" /protein_id="XP_013102108.2" /db_xref="GeneID:106083560" /translation="MAAPAACTRFSDNYDIKEELGRGAFSIVKRCVQKSTGNEFAAKI INTKKLTARDFQKLEREARICRKLHHPNIVRLHDSIQEENYHYLVFDLVTGGELFEDI VAREFYSEADASHCIQQILESVNHCHQNGVVHRDLKPENLLLASKAKGAAVKLADFGL AIEVXGDHQAWFGFAGTPGYLSPEVLKKEPYGKPVDIWACGVILYILLVGYPPFWDED QHRLYSQIKAGAYDYPSPEWDTVTPEAKNLINQMLTVNPHKRITAAEALKHPWICQRE RVASVVHRQETVDCLKKFNARRKLKGAILTTMLATRNFSSKSMVTKKGEGSPVKDSTD SSNATLEDDDVKARRQEIIKITEQLIEAINSGDFDAYTKIGDPHLTAFEPEALGNLVE GIDFHKFYFENVLGKNCKAINTTILNPHVHLLGEDAACIAYVRLTQYIDKQGHAHTHQ SEETRVWHKRDSKWQNVHFHRSASGKVSGATTFDFTSQK" ORIGIN 1 gtgtgtggtg gctgaaatca gctgattgca ttgagtgagt cgcagctgcc gccgtcttcg 61 cgtatctctt cggttgtacg gtgtgtgtgc gacgacgatg agcagcattc tgtgctgtgt 121 gtcgaaaaag attctaaaaa taggagaagt aatagtaaag aagagtgaaa taaactactg 181 aacgacgacg acaacagaaa aaacactttg gcccgagagt tctcgtcgaa attcacaaag 241 agcaaaagtg ctccgcgaaa ccaagaaatg aacacaaaat aaataaaata caaatagaag 301 aaaataatac aatacacaaa aaaagttaaa taaaaaaggc cacagtgaaa aaaagaagtt 361 acgccaaaac tcagtgcgaa aaattgtgac gggaattcaa agaaagaaaa ataaaaacaa 421 aaaatttagt ttagctcctc aacgtatgga tggtggcagt tcaacaagca aggaaaaaaa 481 aggttgtatt tgcagcaacg tttagaaagc gaggcacaat aaatatccca atatacgcac 541 acagtgttgc caatcataga tggtgttaat gagaatacag agagccagcc aagcagggag 601 agcgccaaca gccgctatca gcaactagga gagttaccgg acgacaacac aaaaaccgtt 661 atccaatcaa ctaaccaact aatatccaat tggatactct tgttagacaa ggactgatta 721 gaatttacat atacatacac ttccgttatt cacatttttt ccccctgaat ctgggtcagt 781 tggagttgag acaagcagca gcagcagcag cagtggcagc aatagcaaca aaacgtagta 841 gtagcagcaa cagcggcagc accagcacca gcagcaacat cgttcagtca gtcagtcagt 901 cagttagtca gtcagtggta gcaagtagcc cctaacagaa acgagtgctt cgtatcggcg 961 gagagtagag cgagcgccag cggagaagct gacgaggccg acgacagcaa caacaacgac 1021 ttcggcgact acgtgaacct ctaggaggag gagtgccgcg aagaaacaag tagaagaaga 1081 agaagacgag caaaacagcg taaaaatcaa ttgaacgaca accatcaagt cgacgagtgg 1141 tacaaaattt tcaatatttt ttggtggtcc cgaattttaa gagaaactaa actagaaaaa 1201 aaaacaaacg gaaaaaacca aacctggagt gttaactgct taaccaagaa agaaaaaaga 1261 aaaacaaaaa caaaaaacca actaagaaaa agtagttgaa acatcgctct ctggcaaaga 1321 gacgtaataa aaatcgaaaa tcaaagtcgc aaataaaaaa ggaagacgag caccatacca 1381 tcgccaacca accaaccaca acatcacaga gtagagccaa gcaagtaggc aggaattcag 1441 gcactcagcc agccagccag gcatatactc gctcaaatta tttccacaca cacacacaca 1501 cactctcgtt cagagacaca cagggacaca gaggcagtca caagtcgctc actcaagtct 1561 acttacactc acaaagtgag ttaagtgagc cccccgccca ccccccaaaa cacctactac 1621 tccctaacac aattgaaggg attcaactaa cacaccatca tcatcatcaa caagaacaag 1681 aacaacaaca acaacacggt caccacgttt gattgttttg tggaggggtc ttttgatttg 1741 ttgccgcaat agattttctg aagtgtgcca tcgcgatggc tgctcctgca gcctgtacgc 1801 gtttctcgga caactatgac atcaaagagg agctgggccg aggcgcattt tccattgtga 1861 aacgttgcgt tcaaaaatcg acagggaatg agtttgctgc gaaaataata aatacgaaaa 1921 aattgacagc tcgcgatttt cagaaattgg agcgcgaggc gagaatctgc cggaaattgc 1981 atcacccgaa catagtgcga ctgcacgaca gcatacagga ggagaactat cattatttgg 2041 tatttgattt ggtgaccgga ggcgaattgt tcgaggatat tgtggccagg gaattctatt 2101 cggaggcaga tgcgtcgcat tgtattcagc agatattgga atcggttaat cactgccacc 2161 agaatggtgt ggtccatcgt gatctaaagc cggagaattt gttgctggcc agcaaggcga 2221 agggtgccgc tgtcaaattg gccgacttcg gtctggccat cgaggtgnca ggggatcatc 2281 aggcctggtt tggttttgcc ggcactccgg gctatctgtc gcccgaggtg ctcaagaagg 2341 aaccctacgg caaaccggtg gacatttggg cttgtggtgt tatcttatac attctcctgg 2401 tcggttatcc accgttttgg gatgaggacc aacaccgcct gtattcccaa atcaaggctg 2461 gagcttatga ttatccatcg cccgaatggg atacggtaac accagaagcc aaaaatctaa 2521 tcaatcaaat gcttaccgta aatccccaca aacgtatcac agctgctgaa gccctcaaac 2581 atccctggat atgccaacgt gaacgtgtcg cctccgtggt tcaccgtcaa gaaactgttg 2641 attgcctcaa gaagttcaat gctcgccgca aactgaaggg tgccattctg accacaatgt 2701 tggccactcg aaatttctcc agcaagagca tggttaccaa aaagggcgaa ggttcgcccg 2761 tcaaggattc cactgattca tccaatgcca cattggagga tgatgatgtt aaggccagac 2821 gccaggaaat aatcaaaatt accgaacaac taattgaggc catcaacagt ggagattttg 2881 atgcctacac caaaatcggt gatccgcact tgactgcgtt tgagcctgag gccctgggta 2941 atctggtcga aggaattgac tttcacaaat tctattttga aaatgttttg ggcaaaaatt 3001 gcaaagccat caataccaca attctaaatc ctcatgtcca tctgttgggc gaggatgccg 3061 cttgtattgc ttatgtacgc ttaactcaat atattgacaa acagggccat gcccacaccc 3121 atcagtcgga ggagacacgt gtttggcata aacgcgatag caaatggcag aatgtccatt 3181 tccatcgcag cgcctcgggc aaagtgagtg gagcaacgac ttttgatttt acatcacaaa 3241 agtag