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LOCUS XM_013246543 2172 bp mRNA linear INV 02-SEP-2023 1 receptor (LOC106083463), transcript variant X3, mRNA. ACCESSION XM_013246543 VERSION XM_013246543.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013246543.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2172 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..2172 /gene="LOC106083463" /note="calcitonin gene-related peptide type 1 receptor; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:106083463" CDS 189..1706 /gene="LOC106083463" /codon_start=1 /product="calcitonin gene-related peptide type 1 receptor isoform X1" /protein_id="XP_013101997.1" /db_xref="GeneID:106083463" /translation="MELLLNQLSRSKRDANLKEFLTHLFVDCMVKYKNESWFRNQSAQ STEFPTSIPRYVEDAVLNQGSINLENVNIAEEERNELYATISAATLSPNSITSFTEAV EDAFTTNGMSTTGQYSSTASTPTEEVAFCPLRFDGYLCWPRTPAGTVLSQYCPDFVEG FNSKFLAHKTCLENGTWYHHPESLQEWSNYTNCIDYEDLEFRTFVNELYVKGYAVSAV ALILSLIIFLGFKSLRCTRIRIHVHLFASLAFTCITWILWYKFVVEEPETIRDNTYWC ISLHLLIHYFMLVNYFWMFCEGMHLHLVLVVYPLSFPPKVFVKDTVVMRWFKIFSWLS PLIFVTAYGVARYFHPEDNTHCWMKDSFLLWIFSVPVCVSLVSSFFFLVNVLRVIVRK LHPQSAQPAPLAIRKAVRATIILVPLFGLQHFLLPYRPDTGTPLERFYQLLSVILVSL QGFVVSFLFCFANHDVTFAVRSLLNRLMPSLVSPPPPTSSTGQVATTTPSRELGV" misc_feature 576..770 /gene="LOC106083463" /note="Hormone receptor domain; Region: HRM; pfam02793" /db_xref="CDD:397086" misc_feature 792..1616 /gene="LOC106083463" /note="insect neuropeptide receptor subgroup B4 and related proteins, member of the class B family of seven-transmembrane G protein-coupled receptors; Region: 7tmB1_NPR_B4_insect-like; cd15260" /db_xref="CDD:320388" misc_feature 798..875 /gene="LOC106083463" /note="TM helix 1 [structural motif]; Region: TM helix 1" /db_xref="CDD:320388" misc_feature order(813..815,825..827,951..953,960..965,972..974, 1017..1019,1038..1040,1275..1280,1284..1286,1290..1292, 1455..1457,1464..1466,1509..1511,1521..1523) /gene="LOC106083463" /note="putative polypeptide ligand binding pocket [polypeptide binding]; other site" /db_xref="CDD:320388" misc_feature 900..968 /gene="LOC106083463" /note="TM helix 2 [structural motif]; Region: TM helix 2" /db_xref="CDD:320388" misc_feature 1017..1100 /gene="LOC106083463" /note="TM helix 3 [structural motif]; Region: TM helix 3" /db_xref="CDD:320388" misc_feature 1158..1220 /gene="LOC106083463" /note="TM helix 4 [structural motif]; Region: TM helix 4" /db_xref="CDD:320388" misc_feature 1266..1355 /gene="LOC106083463" /note="TM helix 5 [structural motif]; Region: TM helix 5" /db_xref="CDD:320388" misc_feature 1398..1481 /gene="LOC106083463" /note="TM helix 6 [structural motif]; Region: TM helix 6" /db_xref="CDD:320388" misc_feature 1500..1577 /gene="LOC106083463" /note="TM helix 7 [structural motif]; Region: TM helix 7" /db_xref="CDD:320388" polyA_site 2172 /gene="LOC106083463" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gttttctttt tcaaagaggt aaacattgct gaataaagat tgctgctact attgataggt 61 gaattgtgaa ctgtaatcag cttttgacga gttatgacaa tcttgtggat tttttcgttt 121 ctaaattaat gacaatgatt taaactcaat attgtgggag ataaaggtta aataaataca 181 acaaaaacat ggagctgtta ctaaatcaac ttagtcggag taaacgggat gccaatctaa 241 aggaatttct aacacatcta tttgtggatt gcatggtgaa gtataaaaac gaatcatggt 301 ttcgaaatca atcggcacaa agtactgaat tccccacctc cataccacgc tatgtagaag 361 atgctgttct gaatcagggc tcaattaatt tagaaaatgt caatattgcc gaagaggaac 421 gcaatgagtt gtacgccacc ataagtgctg ccactctttc gcctaattca attacttcat 481 ttacggaggc cgtggaagat gcattcacaa ccaatggcat gtcaacaacc ggccaatact 541 catcaacagc ttccacccca acagaggagg tggcattctg tcccttgcgc tttgatggct 601 acctgtgttg gccacgcacc ccagctggca ctgtactcag tcagtattgt ccagactttg 661 tggagggatt taatagtaaa tttttggccc acaaaacttg cctagaaaat ggcacatggt 721 atcatcatcc cgagagctta caagagtggt ccaactatac aaattgcatt gactatgaag 781 atttggagtt tcgaacattt gttaatgaat tgtatgtgaa aggctatgca gtgtccgctg 841 tggcattaat tctctccctt ataatatttt tgggttttaa atccttgcgt tgcaccagga 901 ttcgcattca tgttcattta ttcgcctctt tggcatttac ttgcatcact tggatcttgt 961 ggtataaatt tgttgttgag gagccagaaa caatacgaga caatacgtat tggtgtatct 1021 ccttgcattt gctaattcat tacttcatgt tggtcaacta cttttggatg ttctgcgagg 1081 gaatgcattt acatttggtg ttagtggtgt atcctttatc ttttccacca aaggtatttg 1141 tcaaggacac agttgttatg cgttggttca aaatcttttc ctggttgtct cctctgatct 1201 ttgtgacggc gtatggggtg gctaggtatt ttcatcccga agataacaca cactgctgga 1261 tgaaggatag cttccttttg tggatattct cagtgccggt gtgtgtgtcc ttggtttcaa 1321 gtttcttttt cctggtgaac gtattgcgtg tgattgttcg caaactgcat ccacaatcgg 1381 cacaaccagc tcctttggcc atacgcaagg ccgtacgagc cacgattatt ttggttccct 1441 tgtttggatt gcagcatttt ctgctaccct atcgtccaga cactggcact cccttggaac 1501 gtttctatca attgttgtcg gttatattgg taagccttca aggatttgtg gtttcgtttc 1561 ttttctgttt tgccaaccat gatgtgactt ttgcggtgag aagtctattg aatcgtttga 1621 tgcccagttt ggtttctcca ccaccaccaa caagtagtac aggtcaggtg gccacaacaa 1681 cacccagccg tgagttagga gtctaagcga cagaggaaat gagtgagcaa acggtagctt 1741 aaccaaaccg cccaaatgtc aaggaacagt ccacatcata atcactcttt gacaaattac 1801 tatattgaaa tgtcaaccat aatcccaacc gaatgatctt ccaggaccaa cctttttctt 1861 ttagttttgt atttattaga taactatcct tcttcaaggg ttattttagc cgtttggcaa 1921 tttcttctca aaatgaatct tttgtacatt ttgtaataca tacatgttga attgtactca 1981 caaaatcctt aacccataca cttgtagtac catggacaag aatcatatat aaacttgtat 2041 aagaatgtat atctcacaaa taataatgaa taaaatatca tatgtaactg acagtggttt 2101 ccacaataaa tgtaacaaat acaatacacg gaatggaaaa ttatatataa aacgtttaag 2161 cacatgagaa aa