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LOCUS XM_013246536 2663 bp mRNA linear INV 02-SEP-2023 1 receptor (LOC106083463), transcript variant X1, mRNA. ACCESSION XM_013246536 VERSION XM_013246536.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2663 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..2663 /gene="LOC106083463" /note="calcitonin gene-related peptide type 1 receptor; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:106083463" CDS 680..2197 /gene="LOC106083463" /codon_start=1 /product="calcitonin gene-related peptide type 1 receptor isoform X1" /protein_id="XP_013101990.1" /db_xref="GeneID:106083463" /translation="MELLLNQLSRSKRDANLKEFLTHLFVDCMVKYKNESWFRNQSAQ STEFPTSIPRYVEDAVLNQGSINLENVNIAEEERNELYATISAATLSPNSITSFTEAV EDAFTTNGMSTTGQYSSTASTPTEEVAFCPLRFDGYLCWPRTPAGTVLSQYCPDFVEG FNSKFLAHKTCLENGTWYHHPESLQEWSNYTNCIDYEDLEFRTFVNELYVKGYAVSAV ALILSLIIFLGFKSLRCTRIRIHVHLFASLAFTCITWILWYKFVVEEPETIRDNTYWC ISLHLLIHYFMLVNYFWMFCEGMHLHLVLVVYPLSFPPKVFVKDTVVMRWFKIFSWLS PLIFVTAYGVARYFHPEDNTHCWMKDSFLLWIFSVPVCVSLVSSFFFLVNVLRVIVRK LHPQSAQPAPLAIRKAVRATIILVPLFGLQHFLLPYRPDTGTPLERFYQLLSVILVSL QGFVVSFLFCFANHDVTFAVRSLLNRLMPSLVSPPPPTSSTGQVATTTPSRELGV" misc_feature 1067..1261 /gene="LOC106083463" /note="Hormone receptor domain; Region: HRM; pfam02793" /db_xref="CDD:397086" misc_feature 1283..2107 /gene="LOC106083463" /note="insect neuropeptide receptor subgroup B4 and related proteins, member of the class B family of seven-transmembrane G protein-coupled receptors; Region: 7tmB1_NPR_B4_insect-like; cd15260" /db_xref="CDD:320388" misc_feature 1289..1366 /gene="LOC106083463" /note="TM helix 1 [structural motif]; Region: TM helix 1" /db_xref="CDD:320388" misc_feature order(1304..1306,1316..1318,1442..1444,1451..1456, 1463..1465,1508..1510,1529..1531,1766..1771,1775..1777, 1781..1783,1946..1948,1955..1957,2000..2002,2012..2014) /gene="LOC106083463" /note="putative polypeptide ligand binding pocket [polypeptide binding]; other site" /db_xref="CDD:320388" misc_feature 1391..1459 /gene="LOC106083463" /note="TM helix 2 [structural motif]; Region: TM helix 2" /db_xref="CDD:320388" misc_feature 1508..1591 /gene="LOC106083463" /note="TM helix 3 [structural motif]; Region: TM helix 3" /db_xref="CDD:320388" misc_feature 1649..1711 /gene="LOC106083463" /note="TM helix 4 [structural motif]; Region: TM helix 4" /db_xref="CDD:320388" misc_feature 1757..1846 /gene="LOC106083463" /note="TM helix 5 [structural motif]; Region: TM helix 5" /db_xref="CDD:320388" misc_feature 1889..1972 /gene="LOC106083463" /note="TM helix 6 [structural motif]; Region: TM helix 6" /db_xref="CDD:320388" misc_feature 1991..2068 /gene="LOC106083463" /note="TM helix 7 [structural motif]; Region: TM helix 7" /db_xref="CDD:320388" polyA_site 2663 /gene="LOC106083463" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 actaacgact acagcatacg gaaaagtatt caattgcaaa atgttttatc taagatttct 61 tttcttcgta atactgttga cagttttcaa tgtgtgtgta aagtgtgata tttcgattac 121 cggctaacaa aaaattcaaa ttagtggaag actaaaggaa acggaaatgt tgtgaatagc 181 atctgcatta ggacattaat taagtgaata actaaataaa tgatagtaat gagttctcaa 241 agcgagtgaa taagtaaatg acggtgaaaa taaatcttca agagtttata agctgaggga 301 aactaaataa aatcttaact agctattaag agaataccga tattcgatgt aaaagtttgc 361 ccctgttcat ggacaagttt gatattcgat atatgaggtg gcataaaact agaggaaagt 421 ctacatgaag aatgaaaaaa aaatattagc agcttgaatt ggcaaaacga ttccacagcc 481 tgaagttcga ttcaaaaagc cacaacttca attgaccagt gtaatattta attgcttcct 541 gaaatacaaa aggattattt aagcctcata gcttttgacg agttatgaca atcttgtgga 601 ttttttcgtt tctaaattaa tgacaatgat ttaaactcaa tattgtggga gataaaggtt 661 aaataaatac aacaaaaaca tggagctgtt actaaatcaa cttagtcgga gtaaacggga 721 tgccaatcta aaggaatttc taacacatct atttgtggat tgcatggtga agtataaaaa 781 cgaatcatgg tttcgaaatc aatcggcaca aagtactgaa ttccccacct ccataccacg 841 ctatgtagaa gatgctgttc tgaatcaggg ctcaattaat ttagaaaatg tcaatattgc 901 cgaagaggaa cgcaatgagt tgtacgccac cataagtgct gccactcttt cgcctaattc 961 aattacttca tttacggagg ccgtggaaga tgcattcaca accaatggca tgtcaacaac 1021 cggccaatac tcatcaacag cttccacccc aacagaggag gtggcattct gtcccttgcg 1081 ctttgatggc tacctgtgtt ggccacgcac cccagctggc actgtactca gtcagtattg 1141 tccagacttt gtggagggat ttaatagtaa atttttggcc cacaaaactt gcctagaaaa 1201 tggcacatgg tatcatcatc ccgagagctt acaagagtgg tccaactata caaattgcat 1261 tgactatgaa gatttggagt ttcgaacatt tgttaatgaa ttgtatgtga aaggctatgc 1321 agtgtccgct gtggcattaa ttctctccct tataatattt ttgggtttta aatccttgcg 1381 ttgcaccagg attcgcattc atgttcattt attcgcctct ttggcattta cttgcatcac 1441 ttggatcttg tggtataaat ttgttgttga ggagccagaa acaatacgag acaatacgta 1501 ttggtgtatc tccttgcatt tgctaattca ttacttcatg ttggtcaact acttttggat 1561 gttctgcgag ggaatgcatt tacatttggt gttagtggtg tatcctttat cttttccacc 1621 aaaggtattt gtcaaggaca cagttgttat gcgttggttc aaaatctttt cctggttgtc 1681 tcctctgatc tttgtgacgg cgtatggggt ggctaggtat tttcatcccg aagataacac 1741 acactgctgg atgaaggata gcttcctttt gtggatattc tcagtgccgg tgtgtgtgtc 1801 cttggtttca agtttctttt tcctggtgaa cgtattgcgt gtgattgttc gcaaactgca 1861 tccacaatcg gcacaaccag ctcctttggc catacgcaag gccgtacgag ccacgattat 1921 tttggttccc ttgtttggat tgcagcattt tctgctaccc tatcgtccag acactggcac 1981 tcccttggaa cgtttctatc aattgttgtc ggttatattg gtaagccttc aaggatttgt 2041 ggtttcgttt cttttctgtt ttgccaacca tgatgtgact tttgcggtga gaagtctatt 2101 gaatcgtttg atgcccagtt tggtttctcc accaccacca acaagtagta caggtcaggt 2161 ggccacaaca acacccagcc gtgagttagg agtctaagcg acagaggaaa tgagtgagca 2221 aacggtagct taaccaaacc gcccaaatgt caaggaacag tccacatcat aatcactctt 2281 tgacaaatta ctatattgaa atgtcaacca taatcccaac cgaatgatct tccaggacca 2341 acctttttct tttagttttg tatttattag ataactatcc ttcttcaagg gttattttag 2401 ccgtttggca atttcttctc aaaatgaatc ttttgtacat tttgtaatac atacatgttg 2461 aattgtactc acaaaatcct taacccatac acttgtagta ccatggacaa gaatcatata 2521 taaacttgta taagaatgta tatctcacaa ataataatga ataaaatatc atatgtaact 2581 gacagtggtt tccacaataa atgtaacaaa tacaatacac ggaatggaaa attatatata 2641 aaacgtttaa gcacatgaga aaa