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LOCUS XM_013246528 2595 bp mRNA linear INV 02-SEP-2023 1 receptor (LOC106083463), transcript variant X6, mRNA. ACCESSION XM_013246528 VERSION XM_013246528.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2595 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..2595 /gene="LOC106083463" /note="calcitonin gene-related peptide type 1 receptor; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:106083463" CDS 612..2129 /gene="LOC106083463" /codon_start=1 /product="calcitonin gene-related peptide type 1 receptor isoform X1" /protein_id="XP_013101982.1" /db_xref="GeneID:106083463" /translation="MELLLNQLSRSKRDANLKEFLTHLFVDCMVKYKNESWFRNQSAQ STEFPTSIPRYVEDAVLNQGSINLENVNIAEEERNELYATISAATLSPNSITSFTEAV EDAFTTNGMSTTGQYSSTASTPTEEVAFCPLRFDGYLCWPRTPAGTVLSQYCPDFVEG FNSKFLAHKTCLENGTWYHHPESLQEWSNYTNCIDYEDLEFRTFVNELYVKGYAVSAV ALILSLIIFLGFKSLRCTRIRIHVHLFASLAFTCITWILWYKFVVEEPETIRDNTYWC ISLHLLIHYFMLVNYFWMFCEGMHLHLVLVVYPLSFPPKVFVKDTVVMRWFKIFSWLS PLIFVTAYGVARYFHPEDNTHCWMKDSFLLWIFSVPVCVSLVSSFFFLVNVLRVIVRK LHPQSAQPAPLAIRKAVRATIILVPLFGLQHFLLPYRPDTGTPLERFYQLLSVILVSL QGFVVSFLFCFANHDVTFAVRSLLNRLMPSLVSPPPPTSSTGQVATTTPSRELGV" misc_feature 999..1193 /gene="LOC106083463" /note="Hormone receptor domain; Region: HRM; pfam02793" /db_xref="CDD:397086" misc_feature 1215..2039 /gene="LOC106083463" /note="insect neuropeptide receptor subgroup B4 and related proteins, member of the class B family of seven-transmembrane G protein-coupled receptors; Region: 7tmB1_NPR_B4_insect-like; cd15260" /db_xref="CDD:320388" misc_feature 1221..1298 /gene="LOC106083463" /note="TM helix 1 [structural motif]; Region: TM helix 1" /db_xref="CDD:320388" misc_feature order(1236..1238,1248..1250,1374..1376,1383..1388, 1395..1397,1440..1442,1461..1463,1698..1703,1707..1709, 1713..1715,1878..1880,1887..1889,1932..1934,1944..1946) /gene="LOC106083463" /note="putative polypeptide ligand binding pocket [polypeptide binding]; other site" /db_xref="CDD:320388" misc_feature 1323..1391 /gene="LOC106083463" /note="TM helix 2 [structural motif]; Region: TM helix 2" /db_xref="CDD:320388" misc_feature 1440..1523 /gene="LOC106083463" /note="TM helix 3 [structural motif]; Region: TM helix 3" /db_xref="CDD:320388" misc_feature 1581..1643 /gene="LOC106083463" /note="TM helix 4 [structural motif]; Region: TM helix 4" /db_xref="CDD:320388" misc_feature 1689..1778 /gene="LOC106083463" /note="TM helix 5 [structural motif]; Region: TM helix 5" /db_xref="CDD:320388" misc_feature 1821..1904 /gene="LOC106083463" /note="TM helix 6 [structural motif]; Region: TM helix 6" /db_xref="CDD:320388" misc_feature 1923..2000 /gene="LOC106083463" /note="TM helix 7 [structural motif]; Region: TM helix 7" /db_xref="CDD:320388" polyA_site 2595 /gene="LOC106083463" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 acatgacgga agttgataac ggaaccacgg aaacctttta aaattgaaat atttcaagtt 61 aagcggtcaa acagtaacaa ttattcggaa acggaaatac cggatataaa ataaaaaaaa 121 aaatacatag aattgtaacc attaaaaaaa tatgaatttt aaagtggcac gaaatagatg 181 gatgaaatga tgaaaatatt tgtttttaag caaaattgtg ccatataaat gaaattcctt 241 aagccaaagc atttaccggt ttatgttacc agtttaatgt tcacaatgct tatcaattga 301 atctttagtg tgtgtgcaac cggaaattct tgataagctt tgttgtgtat tatgcaaaat 361 aaatgtgtgt gacaaatata caactaactg gattagattg cgaaaccaga aaggaaaatg 421 ttttaaacaa gtgaaaggta gtaagtggat tggaaaaaat tcaataaaaa acgattcaaa 481 tttattggat aaaaaacttt aagcttttga cgagttatga caatcttgtg gattttttcg 541 tttctaaatt aatgacaatg atttaaactc aatattgtgg gagataaagg ttaaataaat 601 acaacaaaaa catggagctg ttactaaatc aacttagtcg gagtaaacgg gatgccaatc 661 taaaggaatt tctaacacat ctatttgtgg attgcatggt gaagtataaa aacgaatcat 721 ggtttcgaaa tcaatcggca caaagtactg aattccccac ctccatacca cgctatgtag 781 aagatgctgt tctgaatcag ggctcaatta atttagaaaa tgtcaatatt gccgaagagg 841 aacgcaatga gttgtacgcc accataagtg ctgccactct ttcgcctaat tcaattactt 901 catttacgga ggccgtggaa gatgcattca caaccaatgg catgtcaaca accggccaat 961 actcatcaac agcttccacc ccaacagagg aggtggcatt ctgtcccttg cgctttgatg 1021 gctacctgtg ttggccacgc accccagctg gcactgtact cagtcagtat tgtccagact 1081 ttgtggaggg atttaatagt aaatttttgg cccacaaaac ttgcctagaa aatggcacat 1141 ggtatcatca tcccgagagc ttacaagagt ggtccaacta tacaaattgc attgactatg 1201 aagatttgga gtttcgaaca tttgttaatg aattgtatgt gaaaggctat gcagtgtccg 1261 ctgtggcatt aattctctcc cttataatat ttttgggttt taaatccttg cgttgcacca 1321 ggattcgcat tcatgttcat ttattcgcct ctttggcatt tacttgcatc acttggatct 1381 tgtggtataa atttgttgtt gaggagccag aaacaatacg agacaatacg tattggtgta 1441 tctccttgca tttgctaatt cattacttca tgttggtcaa ctacttttgg atgttctgcg 1501 agggaatgca tttacatttg gtgttagtgg tgtatccttt atcttttcca ccaaaggtat 1561 ttgtcaagga cacagttgtt atgcgttggt tcaaaatctt ttcctggttg tctcctctga 1621 tctttgtgac ggcgtatggg gtggctaggt attttcatcc cgaagataac acacactgct 1681 ggatgaagga tagcttcctt ttgtggatat tctcagtgcc ggtgtgtgtg tccttggttt 1741 caagtttctt tttcctggtg aacgtattgc gtgtgattgt tcgcaaactg catccacaat 1801 cggcacaacc agctcctttg gccatacgca aggccgtacg agccacgatt attttggttc 1861 ccttgtttgg attgcagcat tttctgctac cctatcgtcc agacactggc actcccttgg 1921 aacgtttcta tcaattgttg tcggttatat tggtaagcct tcaaggattt gtggtttcgt 1981 ttcttttctg ttttgccaac catgatgtga cttttgcggt gagaagtcta ttgaatcgtt 2041 tgatgcccag tttggtttct ccaccaccac caacaagtag tacaggtcag gtggccacaa 2101 caacacccag ccgtgagtta ggagtctaag cgacagagga aatgagtgag caaacggtag 2161 cttaaccaaa ccgcccaaat gtcaaggaac agtccacatc ataatcactc tttgacaaat 2221 tactatattg aaatgtcaac cataatccca accgaatgat cttccaggac caaccttttt 2281 cttttagttt tgtatttatt agataactat ccttcttcaa gggttatttt agccgtttgg 2341 caatttcttc tcaaaatgaa tcttttgtac attttgtaat acatacatgt tgaattgtac 2401 tcacaaaatc cttaacccat acacttgtag taccatggac aagaatcata tataaacttg 2461 tataagaatg tatatctcac aaataataat gaataaaata tcatatgtaa ctgacagtgg 2521 tttccacaat aaatgtaaca aatacaatac acggaatgga aaattatata taaaacgttt 2581 aagcacatga gaaaa