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LOCUS XM_013246511 2611 bp mRNA linear INV 02-SEP-2023 1 receptor (LOC106083463), transcript variant X4, mRNA. ACCESSION XM_013246511 VERSION XM_013246511.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2611 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..2611 /gene="LOC106083463" /note="calcitonin gene-related peptide type 1 receptor; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:106083463" CDS 628..2145 /gene="LOC106083463" /codon_start=1 /product="calcitonin gene-related peptide type 1 receptor isoform X1" /protein_id="XP_013101965.1" /db_xref="GeneID:106083463" /translation="MELLLNQLSRSKRDANLKEFLTHLFVDCMVKYKNESWFRNQSAQ STEFPTSIPRYVEDAVLNQGSINLENVNIAEEERNELYATISAATLSPNSITSFTEAV EDAFTTNGMSTTGQYSSTASTPTEEVAFCPLRFDGYLCWPRTPAGTVLSQYCPDFVEG FNSKFLAHKTCLENGTWYHHPESLQEWSNYTNCIDYEDLEFRTFVNELYVKGYAVSAV ALILSLIIFLGFKSLRCTRIRIHVHLFASLAFTCITWILWYKFVVEEPETIRDNTYWC ISLHLLIHYFMLVNYFWMFCEGMHLHLVLVVYPLSFPPKVFVKDTVVMRWFKIFSWLS PLIFVTAYGVARYFHPEDNTHCWMKDSFLLWIFSVPVCVSLVSSFFFLVNVLRVIVRK LHPQSAQPAPLAIRKAVRATIILVPLFGLQHFLLPYRPDTGTPLERFYQLLSVILVSL QGFVVSFLFCFANHDVTFAVRSLLNRLMPSLVSPPPPTSSTGQVATTTPSRELGV" misc_feature 1015..1209 /gene="LOC106083463" /note="Hormone receptor domain; Region: HRM; pfam02793" /db_xref="CDD:397086" misc_feature 1231..2055 /gene="LOC106083463" /note="insect neuropeptide receptor subgroup B4 and related proteins, member of the class B family of seven-transmembrane G protein-coupled receptors; Region: 7tmB1_NPR_B4_insect-like; cd15260" /db_xref="CDD:320388" misc_feature 1237..1314 /gene="LOC106083463" /note="TM helix 1 [structural motif]; Region: TM helix 1" /db_xref="CDD:320388" misc_feature order(1252..1254,1264..1266,1390..1392,1399..1404, 1411..1413,1456..1458,1477..1479,1714..1719,1723..1725, 1729..1731,1894..1896,1903..1905,1948..1950,1960..1962) /gene="LOC106083463" /note="putative polypeptide ligand binding pocket [polypeptide binding]; other site" /db_xref="CDD:320388" misc_feature 1339..1407 /gene="LOC106083463" /note="TM helix 2 [structural motif]; Region: TM helix 2" /db_xref="CDD:320388" misc_feature 1456..1539 /gene="LOC106083463" /note="TM helix 3 [structural motif]; Region: TM helix 3" /db_xref="CDD:320388" misc_feature 1597..1659 /gene="LOC106083463" /note="TM helix 4 [structural motif]; Region: TM helix 4" /db_xref="CDD:320388" misc_feature 1705..1794 /gene="LOC106083463" /note="TM helix 5 [structural motif]; Region: TM helix 5" /db_xref="CDD:320388" misc_feature 1837..1920 /gene="LOC106083463" /note="TM helix 6 [structural motif]; Region: TM helix 6" /db_xref="CDD:320388" misc_feature 1939..2016 /gene="LOC106083463" /note="TM helix 7 [structural motif]; Region: TM helix 7" /db_xref="CDD:320388" polyA_site 2611 /gene="LOC106083463" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 acatgacgga agttgataac ggaaccacgg aaacctttta aaattgaaat atttcaagtt 61 aagcggtcaa acagtaacaa ttattcggaa acggaaatac cggatataaa ataaaaaaaa 121 aaatacatag aattgtaacc attaaaaaaa tatgaatttt aaagtggcac gaaatagatg 181 gatgaaatga tgaaaatatt tgtttttaag caaaattgtg ccatataaat gaaattcctt 241 aagccaaagc atttaccggt ttatgttacc agtttaatgt tcacaatgct tatcaattga 301 atctttagtg tgtgtgcaac cggaaattct tgataagctt tgttgtgtat tatgtgagag 361 aggttgtgtg caaaataaat gtgtgtgaca aatatacaac taactggatt agattgcgaa 421 accagaaagg aaaatgtttt aaacaagtga aaggtagtaa gtggattgga aaaaattcaa 481 taaaaaacga ttcaaattta ttggataaaa aactttaagc ttttgacgag ttatgacaat 541 cttgtggatt ttttcgtttc taaattaatg acaatgattt aaactcaata ttgtgggaga 601 taaaggttaa ataaatacaa caaaaacatg gagctgttac taaatcaact tagtcggagt 661 aaacgggatg ccaatctaaa ggaatttcta acacatctat ttgtggattg catggtgaag 721 tataaaaacg aatcatggtt tcgaaatcaa tcggcacaaa gtactgaatt ccccacctcc 781 ataccacgct atgtagaaga tgctgttctg aatcagggct caattaattt agaaaatgtc 841 aatattgccg aagaggaacg caatgagttg tacgccacca taagtgctgc cactctttcg 901 cctaattcaa ttacttcatt tacggaggcc gtggaagatg cattcacaac caatggcatg 961 tcaacaaccg gccaatactc atcaacagct tccaccccaa cagaggaggt ggcattctgt 1021 cccttgcgct ttgatggcta cctgtgttgg ccacgcaccc cagctggcac tgtactcagt 1081 cagtattgtc cagactttgt ggagggattt aatagtaaat ttttggccca caaaacttgc 1141 ctagaaaatg gcacatggta tcatcatccc gagagcttac aagagtggtc caactataca 1201 aattgcattg actatgaaga tttggagttt cgaacatttg ttaatgaatt gtatgtgaaa 1261 ggctatgcag tgtccgctgt ggcattaatt ctctccctta taatattttt gggttttaaa 1321 tccttgcgtt gcaccaggat tcgcattcat gttcatttat tcgcctcttt ggcatttact 1381 tgcatcactt ggatcttgtg gtataaattt gttgttgagg agccagaaac aatacgagac 1441 aatacgtatt ggtgtatctc cttgcatttg ctaattcatt acttcatgtt ggtcaactac 1501 ttttggatgt tctgcgaggg aatgcattta catttggtgt tagtggtgta tcctttatct 1561 tttccaccaa aggtatttgt caaggacaca gttgttatgc gttggttcaa aatcttttcc 1621 tggttgtctc ctctgatctt tgtgacggcg tatggggtgg ctaggtattt tcatcccgaa 1681 gataacacac actgctggat gaaggatagc ttccttttgt ggatattctc agtgccggtg 1741 tgtgtgtcct tggtttcaag tttctttttc ctggtgaacg tattgcgtgt gattgttcgc 1801 aaactgcatc cacaatcggc acaaccagct cctttggcca tacgcaaggc cgtacgagcc 1861 acgattattt tggttccctt gtttggattg cagcattttc tgctacccta tcgtccagac 1921 actggcactc ccttggaacg tttctatcaa ttgttgtcgg ttatattggt aagccttcaa 1981 ggatttgtgg tttcgtttct tttctgtttt gccaaccatg atgtgacttt tgcggtgaga 2041 agtctattga atcgtttgat gcccagtttg gtttctccac caccaccaac aagtagtaca 2101 ggtcaggtgg ccacaacaac acccagccgt gagttaggag tctaagcgac agaggaaatg 2161 agtgagcaaa cggtagctta accaaaccgc ccaaatgtca aggaacagtc cacatcataa 2221 tcactctttg acaaattact atattgaaat gtcaaccata atcccaaccg aatgatcttc 2281 caggaccaac ctttttcttt tagttttgta tttattagat aactatcctt cttcaagggt 2341 tattttagcc gtttggcaat ttcttctcaa aatgaatctt ttgtacattt tgtaatacat 2401 acatgttgaa ttgtactcac aaaatcctta acccatacac ttgtagtacc atggacaaga 2461 atcatatata aacttgtata agaatgtata tctcacaaat aataatgaat aaaatatcat 2521 atgtaactga cagtggtttc cacaataaat gtaacaaata caatacacgg aatggaaaat 2581 tatatataaa acgtttaagc acatgagaaa a