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LOCUS XM_013246504 2630 bp mRNA linear INV 02-SEP-2023 1 receptor (LOC106083463), transcript variant X2, mRNA. ACCESSION XM_013246504 VERSION XM_013246504.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2630 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..2630 /gene="LOC106083463" /note="calcitonin gene-related peptide type 1 receptor; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:106083463" CDS 647..2164 /gene="LOC106083463" /codon_start=1 /product="calcitonin gene-related peptide type 1 receptor isoform X1" /protein_id="XP_013101958.1" /db_xref="GeneID:106083463" /translation="MELLLNQLSRSKRDANLKEFLTHLFVDCMVKYKNESWFRNQSAQ STEFPTSIPRYVEDAVLNQGSINLENVNIAEEERNELYATISAATLSPNSITSFTEAV EDAFTTNGMSTTGQYSSTASTPTEEVAFCPLRFDGYLCWPRTPAGTVLSQYCPDFVEG FNSKFLAHKTCLENGTWYHHPESLQEWSNYTNCIDYEDLEFRTFVNELYVKGYAVSAV ALILSLIIFLGFKSLRCTRIRIHVHLFASLAFTCITWILWYKFVVEEPETIRDNTYWC ISLHLLIHYFMLVNYFWMFCEGMHLHLVLVVYPLSFPPKVFVKDTVVMRWFKIFSWLS PLIFVTAYGVARYFHPEDNTHCWMKDSFLLWIFSVPVCVSLVSSFFFLVNVLRVIVRK LHPQSAQPAPLAIRKAVRATIILVPLFGLQHFLLPYRPDTGTPLERFYQLLSVILVSL QGFVVSFLFCFANHDVTFAVRSLLNRLMPSLVSPPPPTSSTGQVATTTPSRELGV" misc_feature 1034..1228 /gene="LOC106083463" /note="Hormone receptor domain; Region: HRM; pfam02793" /db_xref="CDD:397086" misc_feature 1250..2074 /gene="LOC106083463" /note="insect neuropeptide receptor subgroup B4 and related proteins, member of the class B family of seven-transmembrane G protein-coupled receptors; Region: 7tmB1_NPR_B4_insect-like; cd15260" /db_xref="CDD:320388" misc_feature 1256..1333 /gene="LOC106083463" /note="TM helix 1 [structural motif]; Region: TM helix 1" /db_xref="CDD:320388" misc_feature order(1271..1273,1283..1285,1409..1411,1418..1423, 1430..1432,1475..1477,1496..1498,1733..1738,1742..1744, 1748..1750,1913..1915,1922..1924,1967..1969,1979..1981) /gene="LOC106083463" /note="putative polypeptide ligand binding pocket [polypeptide binding]; other site" /db_xref="CDD:320388" misc_feature 1358..1426 /gene="LOC106083463" /note="TM helix 2 [structural motif]; Region: TM helix 2" /db_xref="CDD:320388" misc_feature 1475..1558 /gene="LOC106083463" /note="TM helix 3 [structural motif]; Region: TM helix 3" /db_xref="CDD:320388" misc_feature 1616..1678 /gene="LOC106083463" /note="TM helix 4 [structural motif]; Region: TM helix 4" /db_xref="CDD:320388" misc_feature 1724..1813 /gene="LOC106083463" /note="TM helix 5 [structural motif]; Region: TM helix 5" /db_xref="CDD:320388" misc_feature 1856..1939 /gene="LOC106083463" /note="TM helix 6 [structural motif]; Region: TM helix 6" /db_xref="CDD:320388" misc_feature 1958..2035 /gene="LOC106083463" /note="TM helix 7 [structural motif]; Region: TM helix 7" /db_xref="CDD:320388" polyA_site 2630 /gene="LOC106083463" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 acatgacgga agttgataac ggaaccacgg aaacctttta aaattgaaat atttcaagtt 61 aagcggtcaa acagtaacaa ttattcggaa acggaaatac cggatataaa ataaaaaaaa 121 aaatacatag aattgtaacc attaaaaaaa tatgaatttt aaagtggcac gaaatagatg 181 gatgaaatga tgaaaatatt tgtttttaag caaaattgtg ccatataaat gaaattcctt 241 aagccaaagc atttaccggt ttatgttacc agtttaatgt tcacaatgct tatcaattga 301 atctttagtg tgtgtgcaac cggaaattct tgataagctt tgttgtgtat tatgtgagag 361 aggttgtgtg tacgtagtgc accaacaggc aaaataaatg tgtgtgacaa atatacaact 421 aactggatta gattgcgaaa ccagaaagga aaatgtttta aacaagtgaa aggtagtaag 481 tggattggaa aaaattcaat aaaaaacgat tcaaatttat tggataaaaa actttaagct 541 tttgacgagt tatgacaatc ttgtggattt tttcgtttct aaattaatga caatgattta 601 aactcaatat tgtgggagat aaaggttaaa taaatacaac aaaaacatgg agctgttact 661 aaatcaactt agtcggagta aacgggatgc caatctaaag gaatttctaa cacatctatt 721 tgtggattgc atggtgaagt ataaaaacga atcatggttt cgaaatcaat cggcacaaag 781 tactgaattc cccacctcca taccacgcta tgtagaagat gctgttctga atcagggctc 841 aattaattta gaaaatgtca atattgccga agaggaacgc aatgagttgt acgccaccat 901 aagtgctgcc actctttcgc ctaattcaat tacttcattt acggaggccg tggaagatgc 961 attcacaacc aatggcatgt caacaaccgg ccaatactca tcaacagctt ccaccccaac 1021 agaggaggtg gcattctgtc ccttgcgctt tgatggctac ctgtgttggc cacgcacccc 1081 agctggcact gtactcagtc agtattgtcc agactttgtg gagggattta atagtaaatt 1141 tttggcccac aaaacttgcc tagaaaatgg cacatggtat catcatcccg agagcttaca 1201 agagtggtcc aactatacaa attgcattga ctatgaagat ttggagtttc gaacatttgt 1261 taatgaattg tatgtgaaag gctatgcagt gtccgctgtg gcattaattc tctcccttat 1321 aatatttttg ggttttaaat ccttgcgttg caccaggatt cgcattcatg ttcatttatt 1381 cgcctctttg gcatttactt gcatcacttg gatcttgtgg tataaatttg ttgttgagga 1441 gccagaaaca atacgagaca atacgtattg gtgtatctcc ttgcatttgc taattcatta 1501 cttcatgttg gtcaactact tttggatgtt ctgcgaggga atgcatttac atttggtgtt 1561 agtggtgtat cctttatctt ttccaccaaa ggtatttgtc aaggacacag ttgttatgcg 1621 ttggttcaaa atcttttcct ggttgtctcc tctgatcttt gtgacggcgt atggggtggc 1681 taggtatttt catcccgaag ataacacaca ctgctggatg aaggatagct tccttttgtg 1741 gatattctca gtgccggtgt gtgtgtcctt ggtttcaagt ttctttttcc tggtgaacgt 1801 attgcgtgtg attgttcgca aactgcatcc acaatcggca caaccagctc ctttggccat 1861 acgcaaggcc gtacgagcca cgattatttt ggttcccttg tttggattgc agcattttct 1921 gctaccctat cgtccagaca ctggcactcc cttggaacgt ttctatcaat tgttgtcggt 1981 tatattggta agccttcaag gatttgtggt ttcgtttctt ttctgttttg ccaaccatga 2041 tgtgactttt gcggtgagaa gtctattgaa tcgtttgatg cccagtttgg tttctccacc 2101 accaccaaca agtagtacag gtcaggtggc cacaacaaca cccagccgtg agttaggagt 2161 ctaagcgaca gaggaaatga gtgagcaaac ggtagcttaa ccaaaccgcc caaatgtcaa 2221 ggaacagtcc acatcataat cactctttga caaattacta tattgaaatg tcaaccataa 2281 tcccaaccga atgatcttcc aggaccaacc tttttctttt agttttgtat ttattagata 2341 actatccttc ttcaagggtt attttagccg tttggcaatt tcttctcaaa atgaatcttt 2401 tgtacatttt gtaatacata catgttgaat tgtactcaca aaatccttaa cccatacact 2461 tgtagtacca tggacaagaa tcatatataa acttgtataa gaatgtatat ctcacaaata 2521 ataatgaata aaatatcata tgtaactgac agtggtttcc acaataaatg taacaaatac 2581 aatacacgga atggaaaatt atatataaaa cgtttaagca catgagaaaa