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LOCUS XM_013246444 5868 bp mRNA linear INV 02-SEP-2023 transcript variant X17, mRNA. ACCESSION XM_013246444 VERSION XM_013246444.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013246444.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5868 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5868 /gene="LOC106083366" /note="homeobox protein cut; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:106083366" CDS 2440..5187 /gene="LOC106083366" /codon_start=1 /product="homeobox protein cut isoform X3" /protein_id="XP_013101898.2" /db_xref="GeneID:106083366" /translation="MFIPDSLRSCMIETDVNSYLQTSSSGQDEFHPFIEALLPYVKSF SYSWFNLQAAKRKYYKKHEKRMSLEEERHCKDELQNEKAEVKQKWASRLLGKLRKDIT QECREDFVQSITGKRKSICVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKAIPL ESTDGERLEKSPECIHPALCVNPYHINVSVRELDLYLANFINTHDPLSSPTPTTPPPG TPSTPSLMLYSNEHNASTNNNNTNSSDNKKHIEEERKNKDVDNTPFAGYSHNPYNGVV CNDIILATGVFSSKELWKLSKERNNSFILASILEETANDLIQASSIKLEHPAAAYECN TYQMSASGAPLGSVVGGVNSAGMVTASDGRASVSASMVLPSGYSIDFVDPRSSMHLSN SSLLRASSATTCKSDPNGSPQDGSSFSVILRQNEDNGSNGGAAASNNADDPALQRYTP TSNRVLLSMGQMRPGEVLMQHNVSSSLVPNSVSPALYYPQQNSPNSNANEAAEEAHHQ QHHHQQQQHHQHHHHQHQLHQASATPKYATELVNHGQDMSEFVAYVCQDTGGIHAANA GDPSDLHVHHHQTSSHFQLQHAAAAAAVGRGPKISAVSAAAAAAHYQQYSTMLPPPPL PPMARPVAIIRSTGDLTMVASPPSSAAISPPPLTSVSSAGDSPRHHHQSLQHHHPSSH HHHHHHHHGHQQQQQQHHQAQQQHTTIDHTSNSSSGLSSMTSKLTNTTASTSSAQEST TSTITVGSNNNSSDLVVASTASASPPPAPTQSPHAHIIDVARCKTSPTSSAAAAVAVS TPTSALTRISAQPYPNTNGREYFNHFHTQTTPLLGYTTMSGVISPTNLSLYSSTTGVT SHRTTPRSRWNSSFLSMEDDFNMMSHTLTSTNPEATPVILMEDSGRYSDEYVTSRDYV T" ORIGIN 1 gacgacatag aatttgagca gagcgccata cggtaaagcc aatagtgaca gcaaaacagc 61 caacaagcaa gagcccatca taacacatta aatggtgagt gaggaaaaac gtttcgtctt 121 gtcttgtctg gtctggctct ggtctggtat cgtacgtttc gtttgctcag actaaaaggg 181 gaaaatgtga aaactgctta aacggaaaaa taaaaaaaaa ataattataa aaaaacaaaa 241 aaaaaattaa aagcctttat ttattaagtg gagtaacaga aggaggtggt gaaaagttta 301 aaacagaatt gtagtttttc ctgtgtaaca tgcttaaaag aaaattgaag aaaaatcaaa 361 aataaaaatg atgtttggta gtttaacaaa ctaaatcaat tatttttttg tttaacgaaa 421 aagtgaaagt tatgattttt ctaatattaa gaaattgaaa aaaagtatta tgaaaaagtt 481 tacttaaaac tcacagccac atagaaatgt ctcgttaaaa tacatatgtg tggctaggta 541 tggcatatac atatgtacgc cacacacatg cacactctca cctagccatg cacagtatag 601 gccaaaaagt tatttttata taatgtagag gaaacgaaaa cattgccgag aaaaatactc 661 actcattcac tcgctcactc actaggctgc tcgctcgcat gtcaaaggcg aaaaacgtac 721 ggaacgggaa aaaaatcaca aaacgaaaac aaaaataagt cgcacacgat tcgaaaaaaa 781 taaaacaaaa acaaaaacaa caagaagcag aacgaatttt cttttttcct tctttttctg 841 agtgctcgac tgcctgcttg cctgcctgcc tgtcgtcgtc tgtctgtctg tcgtctcttc 901 ttttgcgttt gaacaaaaaa attgtgtaac aaaaattcaa aataaatttt ttcaccaaaa 961 cccatatccc tttcaacgaa ttttaaaacg aaaaaaatcc actgtaaaag gaaaatttgt 1021 gcaaaaaagg gcttcttagc caggaaatgt gaaatgtgaa aagcaaatgg agttgacagt 1081 gattggcaaa tgtcggtgca agaaatcgat aatgggcaaa gcaagcggcc caaccaagtt 1141 tgttcttcta aaaagcctac ataaataaac aaagaaaatt tataaaaaaa aaaaataaga 1201 aaataaacaa aaacgtcaac ggcaataata atatagaaat tgttttggtt aattattttt 1261 ggtttatcac tcaacgtcat ttagtgagtc ctcgtcacga ttgtgtgatt tattttccct 1321 aaaaaatctc tgtttaattt aaaaatcaga caatagcaac aataaaacaa ctgtatgcac 1381 aaaaataaat tttaattttt tataaaaaaa tgtaagcaac agcaaaaaaa gacaataaga 1441 aatttggaaa taaaaagaaa caacaacaac taaaataaaa taatagcaaa tagcaaaatg 1501 ttcgatatcc gttgagttcc tataacaaat ggctgataaa caacaacgac aacaacatac 1561 cacaacataa ataaaataac aactacagca cgtacaacca acaacatctc tctctctctc 1621 tctctctctg tctctctcgc tcaacacact ctcatagcaa caccaaaaaa atcaaatcaa 1681 caaaagaaaa ctctgcaaag caaaataaat aaataaaaca acaactacaa aagcagtctc 1741 tctgacaaca acaaaagaaa aagcagccgc atccataggc caccagacaa tgataatgtc 1801 gttgataatg ttgccacctg ccacctttaa agatactgtc tacaaaacat tgccaatgtt 1861 gttacgagcc taaagggata tcctcaaaaa aaaaaacaaa cagcagcgca gcagttgtca 1921 tctgtctact tcgacttctt cgtcttcttc tttctttatc tttcccatat tcagtctttc 1981 gcacaaacca tacactctcg ctcacttcta tgccaaaggc aaggctgata aacaaatgtt 2041 ggtgggattt aatattttca acagaaattt tcttactctg ctttaaaaga cttcttcgca 2101 tctcaatctc ttatcctgtt ttatggacag atttcctgtt ggcccaacat tgcgtgcggt 2161 tgtgttgacc caatttcatc acttcaacta gacacagcca tccaagacat gaaaagaaaa 2221 gctcaaattc aaaaataaaa ccaaaggtct tccaagtata acaaaaacta gaaacaacat 2281 cctgtaaaac tcaataaaaa aaaaacaaaa acaacaaaaa accaaggcaa accacaacga 2341 ctaacaacaa ttgcaaaagg caaacagaga aacaccattc tcatcaataa taacaacaac 2401 gaacaacgga gtaacataca aaagcctttt tcacaaggca tgtttatacc tgattcactg 2461 cgtagctgta tgatcgagac ggacgttaac tcttatctgc aaacatcatc ctcaggacag 2521 gatgagtttc atccgttcat tgaagccctg ttgccatatg tcaaatcatt ttcgtactcg 2581 tggttcaact tacaagcagc caagcgtaaa tactacaaga aacatgagaa acgcatgtca 2641 ttggaggagg agcgacattg caaggatgaa ctacagaacg aaaaggctga ggttaaacag 2701 aaatgggctt cccgtttgct gggaaaatta cgcaaagaca taacccaaga atgccgcgaa 2761 gactttgtac agtccataac gggcaaacgc aaatcgatat gtgttctctc caatcccgat 2821 cagaaaggca aaatgcgtcg catcgattgt ttgcggcagg cggacaaggt ttggcggctc 2881 gatctagtca tggtcatact cttcaaggcc atacctttgg agagcaccga tggcgaacgt 2941 ctggaaaaat ctcccgaatg catacacccg gctttgtgtg tcaatcccta tcacatcaat 3001 gtctcagtgc gtgaactcga tttgtatttg gccaatttca tcaataccca cgatccattg 3061 agtagtccta cgcccacaac accgcctccg ggcacaccct caacgccttc gctcatgctc 3121 tatagcaatg agcataatgc cagcaccaac aacaacaaca ccaatagctc agacaataag 3181 aaacacatag aagaagagcg caagaacaaa gacgtagaca acacaccatt tgcaggctac 3241 agccacaatc cctacaatgg tgttgtgtgc aatgatataa ttttggccac tggtgttttc 3301 tcttccaagg agctttggaa gctgtcaaaa gagaggaaca actctttcat tttagcttcc 3361 atattggaag aaaccgccaa tgatctcatc caggctagct cgatcaaatt ggagcatccg 3421 gcggctgcct atgagtgcaa tacatatcaa atgtcagcct caggagctcc actgggttcg 3481 gtggtgggag gagttaacag tgcgggtatg gtgacagcaa gtgatggcag ggcctcggtt 3541 agtgcttcca tggtattgcc ctcgggttac agcattgact ttgtggatcc acgcagcagc 3601 atgcatctct caaactcctc tctgctgagg gcctcttcgg ctaccacctg caaaagtgat 3661 cccaatggct cgccacagga tggcagcagt ttctctgtga tattgaggca aaatgaagac 3721 aatggcagca atggcggagc cgctgccagc aataatgccg atgatcctgc tctacagagg 3781 tacacgccca ccagcaatag agtgttgttg agtatggggc aaatgaggcc aggagaagtg 3841 cttatgcaac acaatgtcag ctcttccttg gtgccaaact cggttagccc tgctttgtat 3901 tatccccagc agaacagtcc caactccaat gctaatgagg ccgccgaaga agcccatcat 3961 cagcaacacc atcatcagca gcaacaacac caccagcatc atcatcatca acatcaactg 4021 catcaggcat ccgctacacc caaatatgcc accgagttgg tcaaccacgg tcaggatatg 4081 tcggaatttg tggcttatgt ctgccaggat actgggggta tacatgccgc caatgcgggc 4141 gatccttccg acttacatgt gcatcatcac caaacgtctt cccattttca attgcagcat 4201 gctgctgccg ccgctgctgt gggtcggggt cccaagattt cagcagtctc ggctgccgca 4261 gctgcggcac attaccagca atacagcacc atgttgccac caccaccgct accgcctatg 4321 gcccggccgg tggccataat acgttcgacg ggggatttaa ccatggtggc gtcaccaccc 4381 tcatctgccg ccatatcacc gccccctctg acgagtgtat cctcggctgg tgattcgcca 4441 cgacatcatc accagagttt gcagcatcat catccttcct cacatcatca tcatcaccac 4501 catcatcatg gacatcagca gcagcaacag caacatcatc aggcacagca gcaacacacc 4561 actatcgatc acacctcgaa ttccagcagt ggcctaagct caatgacttc gaaactaacc 4621 aacacaaccg cctccaccag ttccgcccaa gagtctacaa ccagcaccat aactgtgggc 4681 agcaataata attcttccga tttggtggtg gcctctacag cgtcggcatc accgcctcca 4741 gcacccacac aatcgccgca tgcacacatc atagatgtgg caagatgtaa gacatcgccc 4801 acttcatcgg cggcggcagc agttgcggtg tccacaccca catcggcgtt gacgcgtata 4861 tcggcccaac cgtatcccaa tacgaatggg cgtgaatact ttaatcattt ccatacacaa 4921 accacaccgc tcttgggtta taccaccatg tcgggggtca tcagtcctac aaatcttagc 4981 ctctattcat ctacaacggg tgttacatcg catcgcacca cccccaggtc acgctggaat 5041 tcctcttttc tttccatgga agatgatttc aacatgatgt cccacacact gacaagcaca 5101 aatccagaag ccactccagt catacttatg gaagattctg gtcgttacag tgatgaatat 5161 gtcacaagtc gtgattatgt tacatgatta taaatgcatc aatcgtttta tatgccctac 5221 tagaactgca atcacagcaa cagacagcaa caataataac aaacaaacca aaactgtaag 5281 aaataataac actactattc tatacataca tatatatata tacatacatc tattctatac 5341 tgtaactata gatacaacta gaatatttat atataaaaaa attattatta ttatttatta 5401 tttttatata attaagagaa gagagaaaaa acaaaaacac ttgttttagg aaatttattt 5461 gcaagcaaac atgttgaaat gtttgagagg aaatattata tacacatata tagctcaagg 5521 caaatcccta agcagttata gatcatgaaa aaagtcggag ttcgaggcaa ttggatacac 5581 caatgaagag aaagtataaa gttcaaatga aaattcaatt tgaagctaag atttcattgt 5641 ttttggtatt gtttttattt aatgcttgaa gaagataata tagctcaagg tcttagctgt 5701 ttttaacaat ttgaatctat ttcctaagtt aattaaatca aaagttttag ggaaaaaact 5761 gatttattaa caaaatttat ataaatcata cgcaacctgg gcaaaaaatc agtttttaat 5821 taatatctta ttttaaacgg atttttgtat ggtttttctt tgttttat