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LOCUS XM_013246436 5880 bp mRNA linear INV 02-SEP-2023 transcript variant X16, mRNA. ACCESSION XM_013246436 VERSION XM_013246436.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013246436.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5880 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5880 /gene="LOC106083366" /note="homeobox protein cut; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:106083366" CDS 2440..5199 /gene="LOC106083366" /codon_start=1 /product="uncharacterized protein LOC106083366 isoform X2" /protein_id="XP_013101890.2" /db_xref="GeneID:106083366" /translation="MFIPDSLRSCMIETDVNSYLQTSSSGQVLNLYVDEFHPFIEALL PYVKSFSYSWFNLQAAKRKYYKKHEKRMSLEEERHCKDELQNEKAEVKQKWASRLLGK LRKDITQECREDFVQSITGKRKSICVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVIL FKAIPLESTDGERLEKSPECIHPALCVNPYHINVSVRELDLYLANFINTHDPLSSPTP TTPPPGTPSTPSLMLYSNEHNASTNNNNTNSSDNKKHIEEERKNKDNTPFAGYSHNPY NGVVCNDIILATGVFSSKELWKLSKERNNSFILASILEETANDLIQASSIKLEHPAAA YECNTYQMSASGAPLGSVVGGVNSAGMVTASDGRASVSASMVLPSGYSIDFVDPRSSM HLSNSSLLRASSATTCKSDPNGSPQDGSSFSVILRQNEDNGSNGGAAASNNADDPALQ RYTPTSNRVLLSMGQMRPGEVLMQHNVSSSLVPNSVSPALYYPQQNSPNSNANEAAEE AHHQQHHHQQQQHHQHHHHQHQLHQASATPKYATELVNHGQDMSEFVAYVCQDTGGIH AANAGDPSDLHVHHHQTSSHFQLQHAAAAAAVGRGPKISAVSAAAAAAHYQQYSTMLP PPPLPPMARPVAIIRSTGDLTMVASPPSSAAISPPPLTSVSSAGDSPRHHHQSLQHHH PSSHHHHHHHHHGHQQQQQQHHQAQQQHTTIDHTSNSSSGLSSMTSKLTNTTASTSSA QESTTSTITVGSNNNSSDLVVASTASASPPPAPTQSPHAHIIDVARCKTSPTSSAAAA VAVSTPTSALTRISAQPYPNTNGREYFNHFHTQTTPLLGYTTMSGVISPTNLSLYSST TGVTSHRTTPRSRWNSSFLSMEDDFNMMSHTLTSTNPEATPVILMEDSGRYSDEYVTS RDYVT" ORIGIN 1 gacgacatag aatttgagca gagcgccata cggtaaagcc aatagtgaca gcaaaacagc 61 caacaagcaa gagcccatca taacacatta aatggtgagt gaggaaaaac gtttcgtctt 121 gtcttgtctg gtctggctct ggtctggtat cgtacgtttc gtttgctcag actaaaaggg 181 gaaaatgtga aaactgctta aacggaaaaa taaaaaaaaa ataattataa aaaaacaaaa 241 aaaaaattaa aagcctttat ttattaagtg gagtaacaga aggaggtggt gaaaagttta 301 aaacagaatt gtagtttttc ctgtgtaaca tgcttaaaag aaaattgaag aaaaatcaaa 361 aataaaaatg atgtttggta gtttaacaaa ctaaatcaat tatttttttg tttaacgaaa 421 aagtgaaagt tatgattttt ctaatattaa gaaattgaaa aaaagtatta tgaaaaagtt 481 tacttaaaac tcacagccac atagaaatgt ctcgttaaaa tacatatgtg tggctaggta 541 tggcatatac atatgtacgc cacacacatg cacactctca cctagccatg cacagtatag 601 gccaaaaagt tatttttata taatgtagag gaaacgaaaa cattgccgag aaaaatactc 661 actcattcac tcgctcactc actaggctgc tcgctcgcat gtcaaaggcg aaaaacgtac 721 ggaacgggaa aaaaatcaca aaacgaaaac aaaaataagt cgcacacgat tcgaaaaaaa 781 taaaacaaaa acaaaaacaa caagaagcag aacgaatttt cttttttcct tctttttctg 841 agtgctcgac tgcctgcttg cctgcctgcc tgtcgtcgtc tgtctgtctg tcgtctcttc 901 ttttgcgttt gaacaaaaaa attgtgtaac aaaaattcaa aataaatttt ttcaccaaaa 961 cccatatccc tttcaacgaa ttttaaaacg aaaaaaatcc actgtaaaag gaaaatttgt 1021 gcaaaaaagg gcttcttagc caggaaatgt gaaatgtgaa aagcaaatgg agttgacagt 1081 gattggcaaa tgtcggtgca agaaatcgat aatgggcaaa gcaagcggcc caaccaagtt 1141 tgttcttcta aaaagcctac ataaataaac aaagaaaatt tataaaaaaa aaaaataaga 1201 aaataaacaa aaacgtcaac ggcaataata atatagaaat tgttttggtt aattattttt 1261 ggtttatcac tcaacgtcat ttagtgagtc ctcgtcacga ttgtgtgatt tattttccct 1321 aaaaaatctc tgtttaattt aaaaatcaga caatagcaac aataaaacaa ctgtatgcac 1381 aaaaataaat tttaattttt tataaaaaaa tgtaagcaac agcaaaaaaa gacaataaga 1441 aatttggaaa taaaaagaaa caacaacaac taaaataaaa taatagcaaa tagcaaaatg 1501 ttcgatatcc gttgagttcc tataacaaat ggctgataaa caacaacgac aacaacatac 1561 cacaacataa ataaaataac aactacagca cgtacaacca acaacatctc tctctctctc 1621 tctctctctg tctctctcgc tcaacacact ctcatagcaa caccaaaaaa atcaaatcaa 1681 caaaagaaaa ctctgcaaag caaaataaat aaataaaaca acaactacaa aagcagtctc 1741 tctgacaaca acaaaagaaa aagcagccgc atccataggc caccagacaa tgataatgtc 1801 gttgataatg ttgccacctg ccacctttaa agatactgtc tacaaaacat tgccaatgtt 1861 gttacgagcc taaagggata tcctcaaaaa aaaaaacaaa cagcagcgca gcagttgtca 1921 tctgtctact tcgacttctt cgtcttcttc tttctttatc tttcccatat tcagtctttc 1981 gcacaaacca tacactctcg ctcacttcta tgccaaaggc aaggctgata aacaaatgtt 2041 ggtgggattt aatattttca acagaaattt tcttactctg ctttaaaaga cttcttcgca 2101 tctcaatctc ttatcctgtt ttatggacag atttcctgtt ggcccaacat tgcgtgcggt 2161 tgtgttgacc caatttcatc acttcaacta gacacagcca tccaagacat gaaaagaaaa 2221 gctcaaattc aaaaataaaa ccaaaggtct tccaagtata acaaaaacta gaaacaacat 2281 cctgtaaaac tcaataaaaa aaaaacaaaa acaacaaaaa accaaggcaa accacaacga 2341 ctaacaacaa ttgcaaaagg caaacagaga aacaccattc tcatcaataa taacaacaac 2401 gaacaacgga gtaacataca aaagcctttt tcacaaggca tgtttatacc tgattcactg 2461 cgtagctgta tgatcgagac ggacgttaac tcttatctgc aaacatcatc ctcaggacag 2521 gtgctgaact tatacgtgga tgagtttcat ccgttcattg aagccctgtt gccatatgtc 2581 aaatcatttt cgtactcgtg gttcaactta caagcagcca agcgtaaata ctacaagaaa 2641 catgagaaac gcatgtcatt ggaggaggag cgacattgca aggatgaact acagaacgaa 2701 aaggctgagg ttaaacagaa atgggcttcc cgtttgctgg gaaaattacg caaagacata 2761 acccaagaat gccgcgaaga ctttgtacag tccataacgg gcaaacgcaa atcgatatgt 2821 gttctctcca atcccgatca gaaaggcaaa atgcgtcgca tcgattgttt gcggcaggcg 2881 gacaaggttt ggcggctcga tctagtcatg gtcatactct tcaaggccat acctttggag 2941 agcaccgatg gcgaacgtct ggaaaaatct cccgaatgca tacacccggc tttgtgtgtc 3001 aatccctatc acatcaatgt ctcagtgcgt gaactcgatt tgtatttggc caatttcatc 3061 aatacccacg atccattgag tagtcctacg cccacaacac cgcctccggg cacaccctca 3121 acgccttcgc tcatgctcta tagcaatgag cataatgcca gcaccaacaa caacaacacc 3181 aatagctcag acaataagaa acacatagaa gaagagcgca agaacaaaga caacacacca 3241 tttgcaggct acagccacaa tccctacaat ggtgttgtgt gcaatgatat aattttggcc 3301 actggtgttt tctcttccaa ggagctttgg aagctgtcaa aagagaggaa caactctttc 3361 attttagctt ccatattgga agaaaccgcc aatgatctca tccaggctag ctcgatcaaa 3421 ttggagcatc cggcggctgc ctatgagtgc aatacatatc aaatgtcagc ctcaggagct 3481 ccactgggtt cggtggtggg aggagttaac agtgcgggta tggtgacagc aagtgatggc 3541 agggcctcgg ttagtgcttc catggtattg ccctcgggtt acagcattga ctttgtggat 3601 ccacgcagca gcatgcatct ctcaaactcc tctctgctga gggcctcttc ggctaccacc 3661 tgcaaaagtg atcccaatgg ctcgccacag gatggcagca gtttctctgt gatattgagg 3721 caaaatgaag acaatggcag caatggcgga gccgctgcca gcaataatgc cgatgatcct 3781 gctctacaga ggtacacgcc caccagcaat agagtgttgt tgagtatggg gcaaatgagg 3841 ccaggagaag tgcttatgca acacaatgtc agctcttcct tggtgccaaa ctcggttagc 3901 cctgctttgt attatcccca gcagaacagt cccaactcca atgctaatga ggccgccgaa 3961 gaagcccatc atcagcaaca ccatcatcag cagcaacaac accaccagca tcatcatcat 4021 caacatcaac tgcatcaggc atccgctaca cccaaatatg ccaccgagtt ggtcaaccac 4081 ggtcaggata tgtcggaatt tgtggcttat gtctgccagg atactggggg tatacatgcc 4141 gccaatgcgg gcgatccttc cgacttacat gtgcatcatc accaaacgtc ttcccatttt 4201 caattgcagc atgctgctgc cgccgctgct gtgggtcggg gtcccaagat ttcagcagtc 4261 tcggctgccg cagctgcggc acattaccag caatacagca ccatgttgcc accaccaccg 4321 ctaccgccta tggcccggcc ggtggccata atacgttcga cgggggattt aaccatggtg 4381 gcgtcaccac cctcatctgc cgccatatca ccgccccctc tgacgagtgt atcctcggct 4441 ggtgattcgc cacgacatca tcaccagagt ttgcagcatc atcatccttc ctcacatcat 4501 catcatcacc accatcatca tggacatcag cagcagcaac agcaacatca tcaggcacag 4561 cagcaacaca ccactatcga tcacacctcg aattccagca gtggcctaag ctcaatgact 4621 tcgaaactaa ccaacacaac cgcctccacc agttccgccc aagagtctac aaccagcacc 4681 ataactgtgg gcagcaataa taattcttcc gatttggtgg tggcctctac agcgtcggca 4741 tcaccgcctc cagcacccac acaatcgccg catgcacaca tcatagatgt ggcaagatgt 4801 aagacatcgc ccacttcatc ggcggcggca gcagttgcgg tgtccacacc cacatcggcg 4861 ttgacgcgta tatcggccca accgtatccc aatacgaatg ggcgtgaata ctttaatcat 4921 ttccatacac aaaccacacc gctcttgggt tataccacca tgtcgggggt catcagtcct 4981 acaaatctta gcctctattc atctacaacg ggtgttacat cgcatcgcac cacccccagg 5041 tcacgctgga attcctcttt tctttccatg gaagatgatt tcaacatgat gtcccacaca 5101 ctgacaagca caaatccaga agccactcca gtcatactta tggaagattc tggtcgttac 5161 agtgatgaat atgtcacaag tcgtgattat gttacatgat tataaatgca tcaatcgttt 5221 tatatgccct actagaactg caatcacagc aacagacagc aacaataata acaaacaaac 5281 caaaactgta agaaataata acactactat tctatacata catatatata tatacataca 5341 tctattctat actgtaacta tagatacaac tagaatattt atatataaaa aaattattat 5401 tattatttat tatttttata taattaagag aagagagaaa aaacaaaaac acttgtttta 5461 ggaaatttat ttgcaagcaa acatgttgaa atgtttgaga ggaaatatta tatacacata 5521 tatagctcaa ggcaaatccc taagcagtta tagatcatga aaaaagtcgg agttcgaggc 5581 aattggatac accaatgaag agaaagtata aagttcaaat gaaaattcaa tttgaagcta 5641 agatttcatt gtttttggta ttgtttttat ttaatgcttg aagaagataa tatagctcaa 5701 ggtcttagct gtttttaaca atttgaatct atttcctaag ttaattaaat caaaagtttt 5761 agggaaaaaa ctgatttatt aacaaaattt atataaatca tacgcaacct gggcaaaaaa 5821 tcagttttta attaatatct tattttaaac ggatttttgt atggtttttc tttgttttat