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LOCUS XM_013245824 3318 bp mRNA linear INV 02-SEP-2023 kinase Raf (LOC106083012), mRNA. ACCESSION XM_013245824 VERSION XM_013245824.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013245824.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3318 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..3318 /gene="LOC106083012" /note="raf homolog serine/threonine-protein kinase Raf; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins" /db_xref="GeneID:106083012" CDS 670..2811 /gene="LOC106083012" /codon_start=1 /product="raf homolog serine/threonine-protein kinase Raf" /protein_id="XP_013101278.1" /db_xref="GeneID:106083012" /translation="MTSTPSSDSEEQYDALTEELHNIQSVIHVTRENIDALNARFANL QEPPPMYIAEYQELTSKLHELETKESELIEQLSAQQELEEKEQHQREVNEYAFQSHYQ NQQQIQQQLLARPPYAASDMTDSLISTQSNQYGGSQCSTLTRQRKVLMRAHLPNQQRT SVEVVPGVRLCDALMKALKLRQLTPDMCEVTTSENGRHIIPWHTDIATIQVDEIYVRL LDKCPIMTHISHQFIRKTFFSLAFCECCRRLLFTGFYCNQCNFRFHQRCYDKVPTLCQ QFPVDSYYQRLLAQNPENAVGILHPGRGMVGDYQARHPRSISQQDRSNSAPNVCYNNI KPLTEAQCKLMQAHGPLQNAGDHSNSTQASPTSTLKHVKRERARSADESNKNLLSSNR SSEENWNIQAEEILIGPRIGSGSFGTVYKAHWHGPVAVKTLNVKTPSLAQLQAFKNEV AMLKKTRHCNILLFMGCVSKPSLAIVTQWCEGSSLYKHIHVKETKFKLKTLIDIGRQV AQGMDYLHAKNIIHRDLKSNNIFLQDEYSVKIGDFGLATAKTRWSGEKQANQPTGSIL WMAPEVIRMQEQNPYSFQSDVYAFGIVLYELLAECLPYSNINNKDQILFMVGRGLLKP DMTRIRSDAPQDLKRLTVDCIKYDRNERPLFRLNLNMLEYIWRTLPKLHRSASDSTLT QTQLHHDDFLYSCPSPKTPVNFQFYHSAGNI" misc_feature 1120..1326 /gene="LOC106083012" /note="Ras-binding domain (RBD) found in RAF family serine/threonine kinases; Region: RBD_RAF; cd01816" /db_xref="CDD:340514" misc_feature order(1120..1122,1135..1152,1156..1158,1195..1197, 1207..1215) /gene="LOC106083012" /note="RBD_Raf-Ras interaction site [polypeptide binding]; other site" /db_xref="CDD:340514" misc_feature order(1135..1137,1141..1152,1195..1197,1204..1215) /gene="LOC106083012" /note="RBD_Raf-KRas interaction site [polypeptide binding]; other site" /db_xref="CDD:340514" misc_feature 1306..1308 /gene="LOC106083012" /note="Ca binding site [ion binding]; other site" /db_xref="CDD:340514" misc_feature 1351..1497 /gene="LOC106083012" /note="protein kinase C conserved region 1 (C1 domain) found in the Raf (Rapidly Accelerated Fibrosarcoma) kinase family; Region: C1_Raf; cd20811" /db_xref="CDD:410361" misc_feature 1900..2658 /gene="LOC106083012" /note="Catalytic domain of the Serine/Threonine Kinases, Raf (Rapidly Accelerated Fibrosarcoma) kinases; Region: STKc_Raf; cd14062" /db_xref="CDD:270964" misc_feature order(1900..1914,1924..1926,1954..1956,1960..1962, 2053..2055,2098..2109,2119..2121,2125..2127,2239..2241, 2245..2247,2251..2256,2260..2262,2293..2295,2302..2304, 2356..2367) /gene="LOC106083012" /note="active site" /db_xref="CDD:270964" misc_feature order(1900..1914,1924..1926,1954..1956,1960..1962, 2053..2055,2098..2109,2119..2121,2239..2241,2245..2247, 2251..2256,2260..2262,2293..2295) /gene="LOC106083012" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:270964" misc_feature order(1912..1914,2119..2121,2125..2127,2239..2241, 2245..2247,2251..2253,2302..2304,2356..2367) /gene="LOC106083012" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:270964" misc_feature order(1936..1938,1942..1947,2026..2046,2056..2064, 2197..2199,2206..2211,2218..2223,2269..2271,2275..2277, 2656..2658) /gene="LOC106083012" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:270964" misc_feature order(2290..2331,2347..2367) /gene="LOC106083012" /note="activation loop (A-loop); other site" /db_xref="CDD:270964" polyA_site 3318 /gene="LOC106083012" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aatgttgttt aggatgtgtt ccatgatgca aacccagctt tactagctaa aaactgttga 61 tactttccat actttctgaa tttttttatg tttgtgtcac gctgtattac tgccatcatc 121 cgcgttatcg ttggtagtaa tcgtgggtaa cttcaactta aaaaaaactt caacttaaaa 181 gatacaacat tttcggtcaa caaacagacg gataactcga actccaactt gatctatgtc 241 taaggataaa tgagcaaaca tttaaagtag tattccccaa ttggcaggaa ttcattaatc 301 acacagcaag gacaagacaa gaaactttcg gcaaaaaatt gtcttaaacg aagcaatatg 361 gtttatgata cctttccgac acttaacaca gtatggagag attaattttg aaatacacca 421 gcaagtatat cacaagttaa tgtacccaca aaaggtcaaa gaacaagggg cgcaagggaa 481 catcctacgc aattttacaa cagtctatga tatcagtttg caggatataa agagtgattt 541 tttagattca agacttttcg tgtgtaccgc aacacatcag taaagcaata attaatgtgt 601 ttctagtgcc tagaatttgt ctaaggttgg cttcgattgt gctgttagca acctgttggc 661 ttggcaaaca tgacgagcac accttcatcg gacagtgagg agcaatatga tgccttgacc 721 gaggagttgc ataatatcca atcggtcata catgtgacca gggaaaatat cgatgctctc 781 aatgctagat ttgccaatct acaagagcct ccacccatgt atattgcaga gtatcaggag 841 ttgacttcaa agctacatga gttggagacc aaggaatcag agctgataga gcagctgagt 901 gcacagcagg aattggagga gaaagaacaa catcagagag aagtaaatga gtatgctttc 961 cagtcgcact atcaaaatca gcaacaaata caacaacagt tgctggccag gccgccctat 1021 gctgcaagcg acatgaccga tagtttaata tccactcaga gcaatcaata tggtggtagt 1081 cagtgcagta cactaacacg gcagcgaaaa gtattaatga gggcccacct gcccaaccaa 1141 cagagaacct ctgtggaagt tgtaccaggc gtgcgactgt gcgatgcttt aatgaaagct 1201 ttgaagttgc ggcaattgac gccggacatg tgcgaagtaa caacttcgga aaacggtcgc 1261 catatcattc cgtggcatac tgacattgct accatacagg tggacgagat ctatgtaagg 1321 ttattggata agtgtcccat aatgacacat atttctcacc agttcatacg aaaaacattc 1381 ttttccctgg ccttttgtga atgttgtcgt cgacttttat ttaccgggtt ttattgcaat 1441 caatgcaatt ttcggtttca tcaaagatgt tatgacaaag tgcccacgct gtgtcaacaa 1501 tttccggtgg atagttacta tcagcgtttg ctagcacaaa atccagagaa tgcagtaggc 1561 atattgcatc ctggacgtgg tatggtggga gattatcagg ctcgccatcc acggtctata 1621 agtcaacagg atcgttcaaa ttcagctccc aatgtttgct acaataacat caaaccctta 1681 accgaggccc aatgcaaatt aatgcaagct catggcccgt tacaaaatgc tggtgaccat 1741 tccaattcaa cgcaggcttc acccaccagc acgctcaaac atgtaaaaag ggaaagagcc 1801 aggtcagcag atgagagcaa taaaaacttg ttgtcttcca atagatcctc ggaggaaaat 1861 tggaacatac aagcagaaga gattttaata ggacctcgaa ttggttcagg ttcctttggg 1921 actgtataca aagcccattg gcatggcccg gtggccgtta aaaccctcaa tgtaaaaacg 1981 cctagcttgg ctcagttgca agccttcaaa aatgaagttg ccatgttgaa gaaaactcgg 2041 cattgcaata ttctgttgtt catgggttgt gtttcaaaac cttctttggc cattgtaact 2101 caatggtgcg aaggcagcag tctctataag catattcatg tgaaagagac aaaatttaaa 2161 ttgaaaactc taatagatat tggaagacaa gtggcccagg gaatggatta tttacacgcc 2221 aaaaatatca tacatagaga tctcaaatcc aataatatat tcttgcaaga cgagtattcg 2281 gttaaaatag gcgatttcgg tctggcaact gcgaaaactc gttggtccgg tgagaaacaa 2341 gctaatcaac caactggcag tattctctgg atggctcctg aggtcatacg tatgcaggag 2401 cagaatccct actctttcca atctgatgta tatgcctttg gcattgtttt gtatgaatta 2461 ttggccgaat gtctgcctta tagtaacatc aacaataagg atcagatact ttttatggtg 2521 gggcgaggac ttctgaaacc cgacatgact cgtattcgct ccgatgctcc acaagattta 2581 aaacgtctta cagttgattg cataaaatat gatcgcaatg aaaggccatt gttccgtttg 2641 aatcttaata tgctggagta tatttggcga acgctgccta aactacatcg cagtgctagt 2701 gattctacat tgacgcaaac acaattacat cacgacgact ttctctattc ctgtcccagc 2761 cccaagactc ctgtaaactt ccaattttac catagtgctg gtaatatcta gcgctgatgc 2821 tgatcgttta cctcacttgt gataagaaaa agaattattt gaatcattat tgagattatt 2881 atgatactgg atgataacag cgcgtaaaca ctgcagtagc tacttaaaaa aaagaaatta 2941 aaccgaacaa agcttttaac ttgatggcac ttaaacacac atatatgcat actgaaatga 3001 tacatcatca ccaactataa aaggcaatcg aattgcataa atgaatcaga atgatgttgt 3061 tggaaaatgt cttagcatat gaatcatcat tatttcagta atccaactaa gcaactaaac 3121 caatatttgt gtaaatatga aaccaaaata tagaaatgga tgaggcccgc tctttcttct 3181 ccttgcagaa ggtgtgggtg gcctcgaatg ttttaaattc agcataatcc tcatgtaact 3241 caaatcaaaa cattagatgc ctccattaga cttttaaaac tcaagtaaaa cgaaacgaaa 3301 atagcaactt ttgttaaa