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LOCUS XM_013245712 3155 bp mRNA linear INV 02-SEP-2023 (LOC106082942), transcript variant X5, mRNA. ACCESSION XM_013245712 VERSION XM_013245712.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013245712.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3155 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..3155 /gene="LOC106082942" /note="homeobox protein extradenticle; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins" /db_xref="GeneID:106082942" CDS 173..1303 /gene="LOC106082942" /codon_start=1 /product="homeobox protein extradenticle isoform X2" /protein_id="XP_013101166.1" /db_xref="GeneID:106082942" /translation="MEDPNRMMAHTGGMMAPQGYGMPGQDDGQNPGNENEVRKQKDIG EILQQIMSISEQSLDEAQARKHTLNCHRMKPALFSVLCEIKEKTVLSIRNTQEEEPPD PQLMRLDNMLIAEGVAGPEKGGGGAAAASAAAASQGSSLSIDGADNAIEHSDYRAKLA QIRQIYHQELEKYEQACNEFTTHVMNLLREQSRTRPITPKEIERMVQIIHKKFSSIQM QLKQSTCEAVMILRSRFLDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELAR KCGITVSQVSNWFGNKRIRYKKNIGKAQEEANLYAAKKAAGASPYSMAGPPSGTTTPM MSPAPPQDSMGYSMGSGGYDQQQPYDNSMGGYDPTLHQDLSP" misc_feature 296..883 /gene="LOC106082942" /note="PBC domain; Region: PBC; pfam03792" /db_xref="CDD:461052" misc_feature 887..1069 /gene="LOC106082942" /note="Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner; Region: homeodomain; cd00086" /db_xref="CDD:238039" misc_feature order(887..901,905..907,965..967,983..985,1022..1024, 1028..1033,1040..1045,1049..1057,1061..1066) /gene="LOC106082942" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(893..895,902..904,1031..1033,1040..1045,1052..1054) /gene="LOC106082942" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" polyA_site 3155 /gene="LOC106082942" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 atttgtcgcc atatttgtat ttaacgacga aggagataca gaaaaaagag caaaaaaaaa 61 aactaaaaaa ataaattgac gcgtttaaag actttagctt aaaattgtgc cgtgttttgc 121 tgttgtcccg tttctcgatt atcaccgcga ttaagtgaac aacagcatta acatggagga 181 ccccaatcgg atgatggccc atacgggtgg tatgatggcc ccacaaggtt atggtatgcc 241 tggacaggat gatggccaaa atcccggcaa tgaaaatgag gtgcgcaaac aaaaggatat 301 tggtgaaatt ctacaacaga ttatgagtat ttcggagcag tcattagatg aggcacaagc 361 tcgaaaacat acattaaatt gtcatcgcat gaaaccggct ttgttttcag tgctgtgtga 421 aattaaggaa aaaaccgtcc tctccattcg caatacccaa gaggaggaac ctccagatcc 481 acaattgatg cgtttggaca acatgctcat cgccgagggt gttgctggcc ccgaaaaagg 541 tggtggtggg gctgctgctg cttcggcggc tgcagctagt caaggctctt cactctcaat 601 agatggcgcc gacaatgcca ttgagcattc agactatcgt gccaaattag cacagattcg 661 ccagatctac catcaggaat tggagaaata tgaacaggcg tgcaatgaat tcaccacaca 721 cgttatgaat ctgttgcgtg aacagagtcg tacaaggccc attactccca aagagattga 781 gcgtatggta caaattatcc acaagaaatt cagttccatt caaatgcaat tgaaacagtc 841 aacctgtgag gccgtcatga ttttgcgttc tcggttccta gacgcacgtc gcaaacgtcg 901 taactttagc aaacaggcat cagaaatact caacgagtat ttctatagtc acttgagtaa 961 tccctatcca tccgaggagg ccaaagagga attggcacgt aaatgtggca taactgtctc 1021 gcaagtttcg aattggtttg gcaataaacg cattcgctat aagaagaaca taggcaaggc 1081 ccaagaggaa gcaaatctgt atgcagctaa gaaggcagcc ggtgcatctc cctattccat 1141 ggcaggacct cccagcggca caacgacacc gatgatgtca ccagcacctc cccaagactc 1201 catgggctat tccatgggct cgggtggcta tgatcaacag cagccgtatg acaatagcat 1261 gggcggctac gatcccaccc tgcaccagga tcttagccct tgaggacgtt attttgataa 1321 caaatactag agagtacttc aaatagttct cacacaaacc attttctaaa ctaacgcact 1381 ttgtttttta gtattttttt ttaacattat ttctaaaact tctttactta aaattcgtgc 1441 ttttttaaag tgtcgtaatt attattatac tttagtaggt gtattatttt tcttaaataa 1501 ttattgtttc tcttactttt attccccctt tccctagccg ccccctcatt cactttttat 1561 ttgggtttag tttatagcaa ttagtattta agtgtaatgg aagattagct taaaaggatc 1621 cttgaaggtt cttggtcctt gagctcttct tctaaaactg caatagtttt cttatttttg 1681 cttttttttt gctgctaagt taaaattttt tgcgtttttc aattttctaa tagataagaa 1741 gtaaaggccg catatacgta atgtattttc catttttttg gtatttacta attttagatt 1801 tagagtctat aacgaaacaa aaccaaacca agtatacttg agaaattttg aaaccgtatg 1861 tatactacta aaaagctaaa aaagcataat tttgagctat tcgaatacaa aatcaaagta 1921 atccacaaac agcaacacac acacacacag ttatacgaga gaaaaaaaaa agcaaaaatc 1981 agaaaacgtt aaacttttga aatgtatacg aaataaatta aatttaattt tcattttgca 2041 aaacaaaatt aaataaatgc aaaaatgtaa caacaacagc aagtgaatac cacatctgca 2101 acacatatat ttatacgaag gtatcccttt ccctttgttc acatgaagaa aaggcagccg 2161 aacccaacag atagattacc acagtttacc ctgcccacaa cactacattc aatgtatact 2221 gaagaacaat atacgagcat actaaaaagc cgagatcaaa ttctcattaa atgcaaaatc 2281 gaaacaaaat acttaaagaa agtaaaaagt gtataccaag tcttgaacta taaatattat 2341 atacaaatac aaaaataata ctaaaaaaag gaaataaaat aatttacttg atatagtggt 2401 aaacttctat atataaaact acaatattga tgcaatattt tttagattaa aaataaagct 2461 aaggctctac ttccccaccc tgcaatccac aatgaaaaca taaaattcaa gcaaatcttc 2521 aaggaaaatc ataagaaaaa aagtttaagg ccctactctc ccccttctct ccaaatagca 2581 tccatattaa gtttgttcta cttaagttgt atattaaaat gttaacataa aaattaacaa 2641 aaagcaaatt caagtatacg agcaaatgaa aatatttaaa taataaaaac gtttctttta 2701 tagtaacata ccatgtacta ctaacatcga acaaaaagcg actagtggca atttcgtttg 2761 agtttaagtt aaaaaaaaat aaattttatt cccaaactac tcataacaat aaccgtgaac 2821 aaataacaaa tcaatcactt gatactcccc cctagaattc aaaatagatt tgagattcaa 2881 tcatttcaat tagtcaacaa ctaaaaccta tatagaagca agcatcaatc acaaccgaag 2941 aaaccatgga agtatttccc aaaaatccag tttgaaatat ttcctcttaa tgtctgtcat 3001 ctccctgaat atttaaaaat tcaagaaaga aataagaagt tgaagtttaa gacctataaa 3061 taaataaata cgattatttt aaaaatacta tacaaacaac aaaaaaccga aaacttaata 3121 aaaagaatgt ggcaaaaaaa atatacaaaa tataa