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LOCUS XM_013245671 3478 bp mRNA linear INV 02-SEP-2023 (LOC106082913), transcript variant X4, mRNA. ACCESSION XM_013245671 VERSION XM_013245671.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013245671.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3478 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..3478 /gene="LOC106082913" /note="AF4/FMR2 family member lilli; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:106082913" CDS 935..3310 /gene="LOC106082913" /codon_start=1 /product="retinal homeobox protein Rx isoform X2" /protein_id="XP_013101125.2" /db_xref="GeneID:106082913" /translation="MPQRSPFAIQELLGLSNNTTTNNNNINTNKVAGTLAAAAAVEAA ATSNMAVGSVASTQKDQKQSEIKQEVHMNGNYSNGSNAATTTTTTTSSSSSSSSSPSP LAAKPSSTAISLESKGQKTATPPALKSSLKISSNLYTNEASAEMVERGRGSSNKSDIM PTDLSSPANNNSPHSSVSSSSSPSANNEAQETATRLQKLQQQHQQSQQQQHHQQQMSM AAASRMAYFNAHAAVAAAFMPHYHLANSSAPHMPQSSHHGVAAQNPHLTANPYATVTA ASHMQQHHALSHQQQQQQQHQHQQQQHHLHQLPTLQHPHMPATHAAAAAAAAAAHHSM LQGQGFSPLKNFPGSSTCIPGSLAGKDFSLDGLNGFANKKKKKKRRHSRTIFTSYQLE KLEEAFKEAHYPDVYAREMLSLKTELPEDRIQVWFQNRRAKWRKTEKCWGRSTIMAEY GLYGAMVRHSLPLPETILKSAKENDSVAPWLLGMHRKSIDAQHTLRDDSGVSDPEDTE VDMEAESTREKLKAQHELSSSTESLNVVSPTPPSSSLPPSSSPATTPTATTMSTPSPH IDLNSPAASPVHQQMQQYFANASPSSSSTSSHPYGNHHFAAQTRLPIQNASNKNLELN TTSASMGGAVTSTITSMTQNSGPTPSYHPLLDAANASACAGATTTKDFHMIMNTAVAA AAAAAAGDIYGTNLMQDPDTFRNNSIACLRAKAQEHQARLLNSGLFLQVRSFADLQQR QQQQQLQQQLHHGKTNLGSNLKICDIKSTGLDHQLVATQSAASTTTKREIV" ORIGIN 1 ttgtagccgt ttaaaatcga agccgacgtt ttttcggttt tttttgttag ctttttcaaa 61 aagagttttt ttacaatttc tgtttttttt ttgttgctgt tgtttgagct ttctttcatt 121 cttgggctgt tatcgtaaat attgttttac tgttctccat gttggtgttg ttgttgctgc 181 tgtttcttgc gattattttg ttgctgctgc cgctgcaaca cacaaaactg ttggtcgtcg 241 tttagtttga caacagttta acgtggaaat tattgcgaat ttgttgtaca cgcaaaaaac 301 tcgacaaaac gcccgctcgc gtgttatcat aaaaaaaagt cgtaacgtca aacgtactct 361 cgccgccaca aacaaacaaa acccaaacag caactaccaa actcaaccaa agaaattttg 421 aaaacgacta aaacaagaaa aaaaagaaca ctgaacgcag ctaacgtaat gccatttacg 481 cttaacgcct tacattgact tttagagttg ggtgttaatt ttgtcattgt cgtgagagtt 541 ttttctactt cttcttgcgt tgattgcttc agccccagac atgtatgggc ttatacgttg 601 tacaatgtga tatatttcta tttttgcaac actctagtct ggaaaaaccg tcacatttca 661 caaaagtgtt tctaaatgca aagactagcc acgaaacaaa gtcaagataa tggaagatta 721 atcgatatgt acataaagtt aaaaaccaaa aagtgatgct aactgtaatt ttacaaagca 781 tacaaaagaa caaaaataaa acgccaatcg tttaaattca aaattgaact gatttaaaaa 841 aaaaaaatcc aaacaaaaag ttttagaaaa aaaagctgaa aagcaaacag aggaacgacg 901 tcaattaaaa aaggacaata aggactaaga caaaatgcca caacgttcac cttttgccat 961 acaggaactg ctgggtctaa gcaataacac caccaccaac aacaacaaca taaacacaaa 1021 caaagtcgcc ggcacattag cggcagcagc agcagtagaa gctgcagcca ccagcaacat 1081 ggccgttggc agtgtggcta gcacacaaaa ggaccaaaag caaagcgaaa taaaacagga 1141 agtacacatg aatggcaatt acagtaatgg tagcaatgcc gcaacaacaa caacaacaac 1201 aacatcatca tcatcttctt catcatcatc gccgtcgccg ttggctgcaa aacccagctc 1261 tacggcaatt agtttagagt ccaaaggcca gaaaacagca acaccaccag cattaaagtc 1321 tagccttaaa atttcctcta atttgtatac aaatgaggct tcagcggaaa tggttgaaag 1381 agggcggggg tccagcaaca agtcggatat aatgcccaca gatttatctt cacctgcaaa 1441 taacaattca ccacattcat cggtctcctc ctcctcctcg ccctccgcca ataatgaggc 1501 ccaggagact gctacaaggc tgcagaaact acaacagcag catcagcaaa gtcaacaaca 1561 acaacatcat cagcaacaaa tgtccatggc tgctgcctca cgcatggcct actttaatgc 1621 ccatgcggcg gtggcagccg cctttatgcc ccattaccat ttggcaaatt cctcagcgcc 1681 acacatgcca cagtcttctc atcatggtgt ggcagcacaa aatcctcacc ttacagcaaa 1741 tccctatgca acggtaacag cagcttcgca catgcaacaa catcatgccc taagccatca 1801 gcagcagcag cagcagcaac atcagcatca acaacagcaa catcatctgc atcaattgcc 1861 cacgctacag catcctcata tgccagcaac acatgcggct gcagctgctg cggcagcagc 1921 ggctcatcac tcaatgctgc agggtcaggg cttttcacct ttgaaaaact tccctggcag 1981 cagcacatgt ataccaggtt ctcttgccgg caaagatttc tctttggatg gccttaatgg 2041 ctttgccaat aaaaagaaaa agaagaaacg acgtcacagt cgcaccatct ttaccagcta 2101 ccaattggag aagctggagg aagcattcaa ggaagcccat tatccagatg tgtatgcgcg 2161 tgaaatgttg tcattgaaaa ccgaattacc tgaggatcgt atacaggtct ggtttcaaaa 2221 tcgccgtgcc aaatggcgta aaactgaaaa atgttggggt cgcagcacta ttatggccga 2281 atatggtttg tatggtgcca tggtacgtca ctcgttgcct ttgcctgaga ctatattgaa 2341 gtcggccaag gagaatgact ctgtagcacc ctggctacta ggtatgcatc gcaaatccat 2401 agatgcccaa cacacattgc gagacgattc gggtgtaagt gatcccgagg atactgaagt 2461 cgatatggaa gccgaatcta ctcgagaaaa acttaaagct cagcacgaat taagctcttc 2521 cacggagtca ctgaatgttg tcagccctac accgccttcc tcctcgttgc caccttcctc 2581 ttcgccagcc actacaccca cagcaacgac catgtcaaca ccctcgccac acattgattt 2641 aaattcaccg gctgcctcac cagtgcatca gcaaatgcag caatatttcg ccaatgcttc 2701 accctcgtcc tcatccacat catcccatcc ctatggcaat catcatttcg cagctcaaac 2761 gaggctgccc atacaaaatg cctcaaataa aaatctggaa ttgaatacca cttcagccag 2821 catgggaggt gcagtaacat cgaccataac atctatgact caaaattcgg ggccaacacc 2881 ttcatatcat ccactattgg atgcagccaa tgccagtgcc tgtgcgggag ccacaacaac 2941 caaagatttt cacatgatta tgaatactgc agtggcagcg gctgcggcgg cagcagctgg 3001 agatatctat ggaacgaatt taatgcagga tccagatacc tttagaaaca attcaatagc 3061 ctgcctgcgt gccaaggccc aagagcatca ggctcgtctg ctaaacagcg gcctctttct 3121 gcaggttcgt tcatttgcag atcttcaaca gcgacagcaa caacagcaat tacagcaaca 3181 attacaccat ggcaagacaa atcttggcag taatctaaaa atttgtgata taaaatctac 3241 aggtctggac catcaacttg tggccactca gagtgcagcc tcaaccacaa ccaaacgaga 3301 aattgtatag attttaaaaa tgtagatttt acaagaaaat agtagaaaaa aaaactaaac 3361 agggaatgtc ttatatttaa ataataaaat cgaagcaaat attttaaaaa tatttccaag 3421 aatatgaaaa tcatcaagag atctcatcca aacttaatat tgtatttata cacttgaa