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LOCUS XM_013245628 6603 bp mRNA linear INV 02-SEP-2023 (LOC106082887), transcript variant X6, mRNA. ACCESSION XM_013245628 VERSION XM_013245628.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013245628.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6603 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..6603 /gene="LOC106082887" /note="E3 ubiquitin-protein ligase UBR1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:106082887" CDS 623..6109 /gene="LOC106082887" /codon_start=1 /product="E3 ubiquitin-protein ligase UBR1 isoform X2" /protein_id="XP_013101082.2" /db_xref="GeneID:106082887" /translation="MDSYEDEVVAPTTTSSESPLKDWRVKFLADTLDKNDFIEFFQKE SRQYFEHDTSGADSARSLKCMFKEAAAKEGIIDVLMEFILGDNPNIVLEKLRLEGATS AVCGKVFKIGEPTYSCRECGMDPTCVLCVNCFKQSAHRYHKYKMSTSGGGGCCDCGDE EAWKKDHYCEEHLRGKENSSSSTIITDAIKERCEIAFVAILTFCVNYLEIETNASLKC LDGDGIGKDYFCTVLYNDESHTFDQVIQTLTKIAKVQHKEATEIVASIDREGRAVVKC DSFNECAALKEAIEKQSVPPNMAMPNSRANQSLRVNVLHIRAVACQQFALQLLTWFQE FLVRHSTFRQIFARIVMDKKAPYCIRHILEYDVALWKTARTCWHRLLISGMLMEYDNK MALAQEFSKNYATIVQDFISDDHDHSYSIVSLSVQLFTVPSIAHYLIAQEGIFYKLLH TFYHKSIEDYMQNKTLHFSKNVSTLSHFKRAAYILYDLRYILSFKPDFWTQELREGFN EGCKALLRVLNAMQGMESVTRQTGQHMDYEPEWECAFNLHIKLANTISLVLEWAATDK EVLEKLCVMVMRYLMQNTFIIGQAKKEQRTVENHIAECLIYDVSSKPVSIHLPLSRFF AGIYLHLGQYGLNFDMISSLKRTPEEIMEPILCTQVMMAQVHSGMWRRNGYSLLHQLY FYRNVRCRTEMLDRDIVGMQIGASLIESNEYLIHLLNKFNLIEWIQPDYEDSNVEPTT DDDFIRQLSMIDEFLELLIVIIGERFMPGVAHVTEEDRTKKEIMQLLCIKSYSHSELN RALPDSNNDTALEDVIDSVAVFKKPQKTDAKGVYELREELYDGFNMYFYHYTKEDKSK SEETQRLRRKNKGELVCCPPPKLPKLTDSFVTIANLLQCDVMMHLMKTILERALDLKR KSFQENHLQKILFLIGYGLQEEESNNYPFLSFYQWAHRYKLLPKLEELSRSARVEAHR DFILWTIKKFKDLQAKQTTAEGLERMQSDDLEPTSSAHDDNGSGDIAATTLTSAEQEK REKEERARLAAERRAKILAQMQSAQNKFMTSNAEMFASANDVASDANAGTAMEWQDEN LEGAVAYNSTACLGVERRLQQPEEEKYKCILCFEEAVVSKDGPTLVYSAFVQKSKVLK PESNYAYSVHTSSCGHVMHVNCWQEYYNNEESKEIRRPRRHPLQVFPSSPSTEFQCPY CRCLSNTVLPLTPPLSKYSVPNVFHAGDEMFPIDLWIEGIRVFSDKLNNLILTEDPDL WSFHLPEWLPTLKEAHIPIDPKQFEKMAQPTQRGELPVSWINFVQHYMKSLKRNEDEG LLNMWHTCVYTVQALEVYLRSVGKPLKDEMSIRHQSCLSGLIRACCLYSGNLTQTDVK SLIKPVAELLNVVFKHNGDSVLEWNCFSKMVSTIMMVPNILFARVRGASVVANGSLMD FYTLQVFLLANVVKSIVLFEQTAEGLMDIEEEDYVALSDKQLENISIFFNKYNIQARQ KAKMAAAAAAAQTQQPKKSVSKESSQEEQSTTVAAESAASDDIDAGMTDVTQQQQQQQ STIAEPKPELLSPQLVTALLDHVKMEMREFLRCSCLFFHFVTDVEFPDSLATSESDTF ENMCKYLGLNSQLESYFDNATPYATIMEMFASHHDITNLDVVTTKIKMTDDPLVIMPC NRTVPQLVNLPEDYSDLINSVSDFSCPNNEREEMKTPTMCLMCGEILCAQSYCCQPDL DSRNVGACTYHAYFCGAEIAPFLRIRDCQIVYLGKNKGCFVQPPYLDDYGETDQGLRR GNPLRLCPARYSKIHLTWLAHGLHEEIARLNDHSSAITTQWHHM" polyA_site 6603 /gene="LOC106082887" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 attttgagct tcaacttata aagaagtgtt gtgtccgtaa tcgcgatttt ttccaataag 61 agaaataact ttttttttgt atatattgcg atagttgttt cgcaatataa atttatacaa 121 aaaaaaaaaa aaaatagaaa ggaaaaatac agaaagagag tgagaaaaat gagtaaattt 181 tagtgcacaa tacattaaaa cacacacatc cccacgcacg aaaaggcaaa gcaaatttat 241 gaaaactgcc taagaagaaa caaataatag aaaattacaa attgaaaaag tgaaaataca 301 aagacacaag aaaaatttga aattagttaa ccacaaaata aagcgaaaac atttcaaatg 361 attagcagcg cacaatttct gtacagagct gttgccattt gctagtgtct caagacatac 421 acatacacaa caacgatata agaagaagaa gaaccaactg gaagcggtcg taaaaaatct 481 cacaactgga tagcttccgg caacattcta tagcagcatc aacaataaca acaaccataa 541 ctctttaaaa cgccatcaag ctccgaaatc catcattttc atcgtctgtc gcacgcatca 601 attgtgatct ctagcctaaa gcatggatag ctatgaggat gaggttgttg caccaacaac 661 cacatcatcg gaatcgcctc tcaaagattg gcgtgtaaaa tttttagctg acaccttgga 721 taaaaatgat ttcatagaat tctttcaaaa agaatccagg cagtattttg aacacgatac 781 cagtggtgcg gattctgccc gaagcttaaa atgcatgttc aaagaggctg ctgccaaaga 841 aggcattatc gatgtcctta tggaattcat attgggcgac aatcccaata ttgtgttgga 901 gaaattacgc cttgagggtg ccacctcggc ggtgtgtggc aaagttttca aaattggcga 961 acccacgtac agctgtcgtg agtgcggcat ggatcccacc tgtgtattgt gtgtgaattg 1021 ttttaaacaa tcggcacatc gttatcacaa atataagatg tccacctctg gtggtggtgg 1081 atgttgcgat tgcggtgatg aggaggcctg gaagaaggat cattattgcg aagaacactt 1141 gcggggcaag gaaaacagtt caagcagtac cattataaca gatgccatta aagaacgctg 1201 tgaaattgcc tttgtggcca ttctaacatt ttgtgtcaac tacttggaaa tcgagacaaa 1261 tgctagtctt aaatgcctcg atggggatgg cattggcaag gattattttt gcaccgtcct 1321 ctacaacgat gaatcccata catttgatca ggtcatacag actctgacga aaattgctaa 1381 agttcaacac aaggaagcta ccgaaatcgt ggccagtatt gatcgagaag gacgcgctgt 1441 ggttaaatgt gatagtttca acgaatgtgc tgccctcaag gaggcaattg agaagcagtc 1501 ggtgccgccc aatatggcta tgccaaatag tagggccaat caatcgcttc gcgtcaatgt 1561 gttgcatata cgcgctgtgg cctgccagca atttgcgttg cagttgctga catggttcca 1621 agagtttctt gtgcgtcaca gtactttccg ccaaatattc gcccgcattg ttatggacaa 1681 gaaggcgccc tattgcatac gccacatatt ggaatacgat gtggccttgt ggaagaccgc 1741 ccgtacttgt tggcaccgtt tgttgatttc cggcatgctc atggagtacg acaacaaaat 1801 ggccttggcc caagagttct ccaaaaacta tgctaccatt gtgcaagact tcataagcga 1861 tgaccatgac cattcgtatt cgattgtgtc acttagtgtc caacttttca cagtgccaag 1921 tatagcccat tatttgatag ctcaagaggg tatcttctac aagttgttgc acaccttcta 1981 ccacaagtcc attgaggatt atatgcaaaa caagacattg cacttctcca agaatgtctc 2041 aacactgagc catttcaagc gggccgccta tatactctac gatttacgct acatacttag 2101 ttttaagccc gacttttgga cccaagaact gcgagaaggc ttcaatgaag gctgtaaggc 2161 tctactgcgt gtcctaaatg ccatgcaggg catggaatcg gtgacgcgtc aaacgggcca 2221 gcacatggac tatgagcccg agtgggagtg tgcattcaat ttgcacataa agttggccaa 2281 caccatttcg ctggtgttgg aatgggctgc cacagacaag gaggtgttgg agaaactctg 2341 tgtcatggta atgcgttatt tgatgcagaa tacctttatt attggccaag ccaagaagga 2401 gcagcgcaca gtggaaaatc acattgctga gtgtttgatt tatgatgtct cttccaagcc 2461 ggtgtccata catttaccct tgtcccgttt ctttgcgggc atctatttgc atttgggcca 2521 atacggtttg aactttgata tgattagcag tttgaagcga acacccgaag agataatgga 2581 gcccatttta tgcacccagg ttatgatggc ccaggttcat tctggcatgt ggcgtcgtaa 2641 tggctactcc ctgctgcatc agttgtattt ctaccgcaat gtacgttgcc gcactgaaat 2701 gttggatcgt gatattgtgg gcatgcaaat tggcgcttcg ttgatcgaaa gcaatgagta 2761 tctcatccat ttgcttaaca aattcaatct gattgagtgg atacagccag actatgaaga 2821 ttccaatgtg gaaccaacca ccgatgatga tttcatacga caactctcga tgattgatga 2881 gttccttgaa ctattgattg tcatcattgg tgagcgtttt atgcccggtg tagcccatgt 2941 caccgaagag gatcgcacca agaaggaaat tatgcagttg ttgtgcatta aatcgtactc 3001 gcattctgaa ctgaatcgtg ctctgcccga ttcgaataac gacactgccc tagaggatgt 3061 tattgattcg gtggctgttt tcaagaaacc ccaaaagacc gatgccaagg gtgtttatga 3121 gttgcgggag gaactttacg atggcttcaa catgtacttc taccactaca ccaaggagga 3181 taaatcaaag tcagaagaga cacaacgatt gcgtcgcaag aacaagggtg aattggtgtg 3241 ttgtccaccg ccgaaattgc caaagcttac ggatagtttt gtgacaattg ccaatttgtt 3301 gcaatgtgat gtcatgatgc accttatgaa aaccattttg gaaagagcat tagacttgaa 3361 gaggaagagt ttccaagaaa atcatttgca aaagattcta ttcctcattg gttatggctt 3421 gcaagaagag gaatccaaca actatccctt cttgtcgttt tatcagtggg cccatagata 3481 caaacttttg ccaaagctag aagagttgtc acgtagtgcc agggttgaag ctcatcgcga 3541 tttcatttta tggacaatta aaaaattcaa agatttacaa gccaaacaaa caacagccga 3601 aggtctcgaa cgcatgcaaa gcgatgatct tgaaccaaca tcgtcggcgc atgatgataa 3661 tggcagcggt gatattgctg caacaacatt aacctcagcc gagcaggaga aacgtgagaa 3721 agaggagagg gcacgtttag cggctgagcg gcgtgccaag attctggcac aaatgcaatc 3781 agctcaaaat aagttcatga cctccaatgc ggaaatgttt gccagtgcca atgatgtggc 3841 cagtgatgcc aatgccggta cggccatgga atggcaagat gaaaatctag aaggggcagt 3901 ggcctataat tccaccgctt gtttgggtgt ggaacgaagg ctgcaacaac ccgaagagga 3961 gaaatataag tgtatattgt gttttgaaga ggcagtggtt agcaaagatg gtcccacttt 4021 ggtctactcg gcctttgtgc aaaagtccaa ggttctcaaa ccagagtcca attacgctta 4081 ctccgtacac accagcagtt gtggccatgt catgcatgtc aactgctggc aggaatacta 4141 caacaatgag gagtccaagg aaatcagacg acccagacgt catcccttgc aagttttccc 4201 ctcatcaccg agcaccgagt ttcagtgccc ctattgccgt tgtctcagca atactgtgct 4261 gcctctaacg cctccgctct ccaagtattc ggtaccaaat gtattccatg ccggcgacga 4321 aatgttcccc attgatttgt ggatcgaagg cattcgtgtg tttagtgata aacttaataa 4381 tctcatattg accgaagatc ccgacctatg gagtttccat ttgcccgaat ggctgcccac 4441 tctcaaagag gcccacatac ccatagatcc caaacaattt gaaaaaatgg cccagccaac 4501 acagcgtggt gaattgccag ttagttggat taatttcgta caacactaca tgaaatcact 4561 gaaacgcaac gaggacgaag gtctgctgaa tatgtggcac acttgtgtgt acacagtgca 4621 agctttggaa gtgtatctgc gatctgtggg taaacccttg aaggatgaaa tgtccatacg 4681 tcaccagagt tgtttgagtg gcctaatacg ggcttgttgt ctgtacagtg gtaatttgac 4741 acaaaccgat gttaagagct taatcaaacc tgtggccgaa ctcttgaatg tggtgttcaa 4801 acataatggc gattcagtgt tggaatggaa ctgcttcagc aaaatggtat ccacaattat 4861 gatggtaccg aatatcctct tcgcacgtgt ccgaggagct tcggttgttg ccaatggcag 4921 cttaatggac ttttatacgc tacaagtttt cctattggcc aatgttgtaa aatccatagt 4981 tctgtttgag cagacagccg aaggcctaat ggacattgag gaagaagatt atgtggcgct 5041 tagtgataaa caattggaaa atatttcgat attctttaac aaatacaaca tacaggccag 5101 gcaaaaggct aagatggcag cggcggcggc ggcggcgcag acacagcagc caaagaagtc 5161 agttagtaaa gagagctcgc aggaagagca atcaacaaca gttgcagcag agtctgcggc 5221 aagcgatgat atcgatgccg gcatgacaga tgtcacacaa caacaacagc agcaacagtc 5281 aacaattgcc gaacctaaac ccgaattgtt aagcccgcag ttggtgacag ccctgctgga 5341 tcatgtcaaa atggaaatgc gtgaattcct gcgttgttcc tgtctcttct tccactttgt 5401 caccgatgtg gaattccccg atagtctggc caccagcgaa agtgatacct ttgagaatat 5461 gtgtaaatat ctgggcctca acagccaact ggagtcgtac ttcgacaatg ccacccccta 5521 tgccacaatt atggaaatgt ttgcctcgca tcatgatata accaacttgg atgtggtgac 5581 cacaaaaatc aaaatgaccg atgatcccct ggtgataatg ccctgcaatc gtaccgtgcc 5641 gcaactcgtc aatctgcccg aggactatag tgatctcatc aacagtgtct cggactttag 5701 ttgtcccaac aatgagcgcg aggagatgaa gacccccacc atgtgtctga tgtgtgggga 5761 gatcttgtgt gcccaatcgt attgctgcca gcccgatttg gatagccgca atgtgggtgc 5821 ctgcacctat catgcgtatt tctgtggagc ggaaatagca cccttcctgc gtatacgaga 5881 ttgccagatt gtgtatttgg gcaagaataa gggatgcttt gtgcagcccc cctatctgga 5941 tgactatggc gagacggatc aaggcctaag gcgtggcaat cccctgcgtt tgtgtccagc 6001 ccgctatagt aaaatacatc tgacatggtt ggcccatggg ctgcatgagg agatagcgcg 6061 tctgaatgat cactcgtcgg ccataaccac acagtggcat cacatgtagt tgcagttgca 6121 gttgcgctgc aagtcaaagt caaatcatca ttattataat actattatta ataattatta 6181 aattaattaa atgtcgtcgc acctatgcaa aacaaacaaa aacaaaacgg aagtaaaaac 6241 caacaacaac aacaacaata acaacataga gtatatacta aacaaacaaa acaacaacaa 6301 cagcagttaa tgtgatttaa attaaaaaaa aaacaaataa acaaaaatag ataacaacaa 6361 caaaacgaaa cgaaagctaa tgcaatatct atgttaattc acctcctcca ggctagggat 6421 atgctgtatg aagaagaaga aaaagaagga ggaggtttac aaacaaatta aacaaagccc 6481 tcctttctct atctctctct ctctcactct catactctca taaatgaaaa cacaacactc 6541 gtaatgaatg tattaaactc aacacactca cacaaagtaa agattagaaa aaaaaaacaa 6601 aaa