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LOCUS XM_013245246 3571 bp mRNA linear INV 02-SEP-2023 (LOC106082624), transcript variant X2, mRNA. ACCESSION XM_013245246 VERSION XM_013245246.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013245246.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3571 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..3571 /gene="LOC106082624" /note="period circadian protein; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 774 Proteins" /db_xref="GeneID:106082624" CDS 116..3247 /gene="LOC106082624" /codon_start=1 /product="period circadian protein isoform X2" /protein_id="XP_013100700.1" /db_xref="GeneID:106082624" /translation="MEGESTESTHNTKVSDSAYSNSCSNSQSQRSGSSKSRLSGSHSS GSSGYGGKPSTQTSSEIHLTKRGKDKGRKKKKQKCSSTTVGNTLDSQEDVTKANEAKV DEDNDLNDITMSQNNRQKENKENLEKETSEHKSEKSLQSPMPSPLSAHTNQGAKTEKT YESAPGKLESSGKAEKLKEDSFCCVISMHDGIVLYTTPSITDVLGFPRDMWLGRSFID FVHPKDRATFASQITTGIPIAESRSSIPKDARSSCCVMLRRYRGLKSGGYGVIGRSVN YEPFRLGLTFREAPEEARSDNSLPSGTNMLLVICATPIKSAYKVCDELLSRKTPKFAI RHTKTGVISTVDSGAVSALGYLPQDLIGRSILDFYHHEDLIVLKEIYETVMKKGQTAG ASFCSKPYRFLVQNGCFVLLDTEWTSFVNPWSRKLEFVIGHHRVFQGPKNLNVFDPPP NNKPKLSEEAMARIVRLKDDIVKLLAETISRPSDTVKQEVSRRCQALASFMEPLMNEV ARKDLKLELPNENELTVSERDSVMLGEISPHHDYYDSKSSIETPPSYNQLNYNENLQR FFNSKPITAPVDSELLKLEQSYCTPADTSSNLSPMQCFEDSGGSGSSRNCTSGSNLNM GSVTNTSNTGTGTSSGSTPLVTLTESLLKKHNDEMEKCMLKKHRESRGRGCGEKNKKP VDKAMEYSGPGHGLKRVGCHSWEGDANRPKQQHTNLVDMQREFIEHHSVSQGPCVSNN NKVFNNRQITLDSSALRIPYTPGLNYTRNVNLWPPFSVGLPTHPTHTAPIAQNSFTPA QHSMFPAIYYIPAPTPNAAAAAAVQAKRNTADMPSTSSQTLPLQYMTGVMYPHPPLFY THPAAAMMYQPVSFSNVTSNISMAPERSNPAVEYRTNPNIIIAPTPAKPQQQPPLQQG AFHSITPVQIQRPSSQATSVKAEPGSNIAPSDSSKKGIAGSPIVSVMGDYVSDQHNEN NLKPNTDSNGNSDDMDGSSFSSFYSSFIKTTDGSDSPQENDNSKEARKFKVQTEEKIM ENAEEDETQHGGL" misc_feature 653..934 /gene="LOC106082624" /note="PAS fold; Region: PAS; pfam00989" /db_xref="CDD:395786" misc_feature 1109..1423 /gene="LOC106082624" /note="PAS domain; Region: PAS_11; pfam14598" /db_xref="CDD:464214" polyA_site 3571 /gene="LOC106082624" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ataaaaacgg agagcaaact aaaacggatt aacgaagtaa taaaaaacaa caaaaataaa 61 aatatatttt tataatccaa aacttaaaaa tcattgttgt gagtaaaccc tcaacatgga 121 aggagaatct acagaatcaa ctcacaacac taaggtgtct gattccgcat attcaaacag 181 ttgcagcaac agtcaatcac aaagaagcgg cagttcgaag tcccgcctta gcggtagcca 241 ttcctccgga agcagtggat atggcggcaa accttctaca caaacaagca gtgaaattca 301 tctcaccaaa cgcggtaaag acaaaggaag aaagaaaaag aagcaaaaat gctcatcaac 361 aactgtggga aataccctgg actcacagga ggatgtcacc aaagcaaacg aggcaaaggt 421 tgacgaagat aatgatctca atgatataac catgagtcaa aataatcgcc aaaaggagaa 481 taaggaaaat ttggaaaagg aaactagtga acataaatcc gagaaatcac tgcaatcgcc 541 tatgccgtct ccgttgtcgg cccacactaa tcagggagcc aaaacggaaa agacttatga 601 atctgcacca ggaaaattgg agagctcagg caaagcagaa aaacttaagg aggatagctt 661 ttgctgtgtc atttctatgc atgatggcat agtattatac accacaccca gtattacgga 721 tgttctcggc tttccacgtg acatgtggtt gggacgatct ttcatcgatt tcgtgcatcc 781 caaggatagg gccacctttg ccagtcaaat aactactgga ataccaattg cagagtctcg 841 cagcagcata cccaaggacg cgcgcagttc atgttgtgtt atgttaaggc gttatcgagg 901 cttaaaatcg ggtggttatg gcgtcatagg acgctccgtg aattatgaac catttcgttt 961 gggattaaca tttcgcgaag ctcctgaaga ggccaggtca gataattcgc tgcccagtgg 1021 caccaacatg ctcttggtca tatgcgctac acctataaaa agcgcctata aagtctgcga 1081 tgaattactt tcgcgtaaaa ctcccaaatt tgcgatacgt cataccaaaa ctggggttat 1141 atcgactgtg gatagtggtg ccgtttcggc attgggttat ttaccccagg atcttatagg 1201 tcgctccata ttagattttt accatcacga ggaccttatt gtgctaaagg aaatctacga 1261 gacggtaatg aagaagggtc aaacagcagg agcttcattt tgcagtaagc catacaggtt 1321 cctagtacaa aatggctgct tcgttctgtt ggatactgag tggacaagct ttgtcaatcc 1381 ctggtcaagg aagctggaat ttgttatagg acatcatcga gtatttcaag gtcccaagaa 1441 tttgaatgtc tttgatccgc cacctaataa taaacccaaa ctgtctgaag aagccatggc 1501 acgtatagtt cgccttaaag atgatatcgt taagctttta gccgaaacta tttcacgtcc 1561 ttccgatacc gtcaaacaag aggtctcaag acgctgccag gctttggctt cattcatgga 1621 accccttatg aacgaagttg cacgcaagga tcttaaattg gaactaccaa atgaaaatga 1681 actcacggta tccgaacgtg actcggttat gttgggagaa atctctccac accatgatta 1741 ttacgacagt aaaagttcga ttgaaactcc accctcgtac aaccaactga attataatga 1801 gaatttgcag cgttttttta acagcaagcc tattacagcc cccgtggatt cggagctact 1861 gaaattggaa caatcctatt gtactccggc cgatacaagc agcaatctca gtcccatgca 1921 atgctttgag gatagcggtg gcagtggctc ttcaagaaac tgcacttcgg gcagcaattt 1981 gaatatgggc agtgtgacca ataccagcaa tacaggcact ggcacatcct cgggcagcac 2041 tcctttggtc actttgaccg aatcattact taaaaagcat aacgatgaaa tggaaaaatg 2101 tatgctgaag aaacaccgcg aatcgagggg ccgaggctgt ggtgaaaaga acaaaaaacc 2161 tgtggacaaa gccatggagt acagtggacc gggtcatgga ttaaagaggg tgggttgcca 2221 ctcatgggaa ggtgatgcca ataggcctaa acaacagcac accaatctgg tggatatgca 2281 gcgcgaattt attgaacatc acagtgtgtc acaaggtccc tgcgtcagca acaacaacaa 2341 agtattcaat aatcgtcaaa ttactttgga tagttcagcg ctacgcatcc cctacactcc 2401 aggtttaaat tacaccagaa atgtcaattt atggcctcca ttttcagtag gcctacccac 2461 ccatccaact cacacagctc ccatagccca aaatagtttc accccagcac aacacagtat 2521 gttccccgcc atttattata taccagcacc cactccaaac gccgccgccg cagccgctgt 2581 tcaagctaaa cgcaacacag ccgatatgcc cagtacttca agtcaaactc tacccctaca 2641 gtatatgacc ggtgtcatgt atccacatcc gccattgttc tacacacatc cggctgctgc 2701 catgatgtat cagccagtat cgttttcaaa tgtgaccagc aacataagta tggcacccga 2761 aagatcgaat cctgcggttg aatatagaac gaatcctaat ataataattg cacccacacc 2821 agccaaacct cagcagcaac caccactaca acagggagcc tttcactcca tcacacccgt 2881 acaaatacaa cgtccttcgt cacaagcaac ttcggtaaaa gccgaaccag gttcgaatat 2941 cgcaccttcg gattcctcga aaaaaggtat agctggctca ccaatagtat ctgttatggg 3001 cgattatgtg tcagatcagc acaatgaaaa caatcttaag cccaataccg acagtaatgg 3061 taatagcgat gatatggatg gttcgagttt ttcctcattc tactcatcat ttattaaaac 3121 cacagatggc tcagatagtc ctcaggaaaa tgacaacagc aaggaagcgc gaaaatttaa 3181 agtacagact gaagaaaaaa taatggaaaa tgctgaagaa gatgaaacac agcatggtgg 3241 cctgtaaata gtcgattaca catgactaag gagagaataa aataaatgtg tttattacaa 3301 atgcgtttat catgtcgtgt atgcatcgct caagtacaat acaactggga ttgaatacct 3361 ataaaaacta accttatgga caaatgtata tgtagcagtt ttctactaca aattgttaac 3421 agtcggcttt tttgttatac tatactatag aagtaaacga atgttaacaa aatatttaag 3481 taaaagtaag aatgacgaat attacgctgt ttaacaatta aacgtaatta aaaaaatata 3541 tataaactta cgtgttgata atttcctttc a