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LOCUS XM_013244439 3999 bp mRNA linear INV 02-SEP-2023 transcript variant X2, mRNA. ACCESSION XM_013244439 VERSION XM_013244439.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013244439.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3999 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..3999 /gene="LOC106082107" /note="cytospin-A; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:106082107" CDS 377..3559 /gene="LOC106082107" /codon_start=1 /product="cytospin-A" /protein_id="XP_013099893.1" /db_xref="GeneID:106082107" /translation="MIKLKSLFRRGQTPSQSSSKHSSSSNSSNNNRNKSQSTQSLNTA IENEDKKQQAGAGATSTKFYPDAQNPPIVQIEGSSSERGVDVGDDRLNNSYHSLEANQ LAQANAGAIAAGQHAHTLPHKKSKGGTSKKGQKQPKPLPVAPKGTAPTVVAPPPGVGG DVVMSSMAAVAPGSQSSSVQPGSATSLSTSHSNPAISATTANAAGTSANDLYALNPAF MAAAAAASYQFINNEQQQILEASNIKMQELQSQLDRLARDKMLAESRVTELLPYQNEV TKLKSDLVKMQSAQEKHQLEITNLKYENESLRTRLRDVVNSPLSDAEKHQIIQDSQRL HSSAPASIALPTSSDNDNGGTPCLTPDWDKHSSSSEISVACLQDKIIQMEETHYSTNE ELQATLQELSDLQAQLSDAQTENERLAEEKDVLFQSLCRQTEKLNDSRTQINNLQELL LRDAKQNTAEEAVSSEREKKLMDLIKTAQDEREAALVKQEELNAELQDLRQTNESYTA EQTRLRERIALLESSIDAEHSQRKQMELQLQAAKEEISHGIIEINRLTTLLENAKSKI EELEQDLARGDKTDLSDLLDAARKEKDLLEEKVAEIQDQWSRSQAEVRRLKDQIADLT EELKVSKNNSKCALSHLEYRLDQVQQEKDKLSAEHQQLCESTSELQVQCKCHLEDKNQ LQSLLSETQKHLADVERKLNDTQQQLEDLQQLRKQEAEEWQQFQSDLLMTVRVANDFK TEALSAREQLVLDNKTQKEKIRMLEQQIEKLNKQQQQQTETQQSVYNTVSTVQQEMAS RRSKVGSFSRQDSRLSVKTLIESIENNKQTAKAEEPESRYSSSSSLNSSSTPEITPSA IPLVTTNTNNPDWSENVSRLTPLIGSLNTATTAAAPNNITTPMVPALTTATTKGPLRE QQQQQSVVSNLHISSLNNVSKSLLSGERKDPLNMLAKNGGSKRNALLKWCQNKTVGYR NIEITNFSSSWNDGLAFCAILHSYLPDRIPYDTLSPANKRRNFSLAFAAAESVGIPTT LNINDMCQIERPDWTQIMSYVTAIYKYFET" misc_feature <1055..>2092 /gene="LOC106082107" /note="Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; Region: YhaN; COG4717" /db_xref="CDD:443752" misc_feature 1595..>2626 /gene="LOC106082107" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:274008" misc_feature 3218..3553 /gene="LOC106082107" /note="calponin homology (CH) domain found in the cytospin family; Region: CH_CYTS; cd21199" /db_xref="CDD:409048" misc_feature order(3242..3244,3254..3256,3404..3406,3410..3415, 3422..3427,3431..3433,3455..3481,3503..3505,3509..3514, 3518..3523,3530..3535,3542..3544) /gene="LOC106082107" /note="putative actin binding site [polypeptide binding]; other site" /db_xref="CDD:409048" polyA_site 3999 /gene="LOC106082107" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tcatcgtacg agcgaagttg gtcggatgtt tggcgcggcg ggttgatcga gcggttgatt 61 ttgtgtttgt gtgtgtgtgt tgtgtccctc agtatttctc aatggaaata aaatagacaa 121 aagtcgctac aaatgaacta aaatgaactg gaaatgtgta atgaaccata ccatcgaaat 181 attttataaa aagaacaaca acgatcttag aaagaaaagt gtttcgtcaa actcgaaaat 241 tcgtcttttg ttataaaaaa aagagagcaa tataaaaaaa atcgaaccac cttggggaaa 301 ttggtacaag aatttctcag aactacaacg acactctgtc cataattaca accaacaata 361 ctaaaaattt ggcaaaatga ttaaattgaa atcactgttt cgcagagggc aaaccccctc 421 acagtcctcg tctaaacatt ccagcagcag caacagtagt aacaacaatc gcaacaaatc 481 ccaatcaacc cagtctctga acactgccat cgagaacgag gataaaaagc aacaggctgg 541 agcaggagca acatcaacga aattttatcc tgatgcccag aatcccccca ttgtgcaaat 601 agaaggttca tcgagtgaac gcggtgttga tgtgggcgat gatcgtttga ataatagcta 661 tcatagtttg gaagcgaatc aattggcaca agccaacgct ggcgctattg cagctggaca 721 acacgctcac actttacccc acaaaaagag taagggaggt acatcgaaaa agggccaaaa 781 acaaccaaag cctttgccag ttgcccccaa aggcactgca ccaacggttg ttgctcctcc 841 accgggtgta ggcggcgatg tagtaatgtc ttcaatggct gctgtggcac caggttccca 901 aagctcttcc gttcagccgg gctctgcgac ctcgttatca acatcacact ctaaccctgc 961 catatcagcg acgacagcta atgctgctgg tacttccgcc aatgatttgt atgccttaaa 1021 tcctgcattt atggctgccg cagcagcagc cagctatcag tttatcaaca acgaacaaca 1081 acaaattcta gaggcttcaa atattaaaat gcaagagttg caatcccaac tggatcgttt 1141 ggctcgtgat aaaatgctgg cagaatcacg agtcacagaa ttgttgccgt atcaaaacga 1201 agtaaccaaa ctaaaaagtg atttagtgaa aatgcagagt gcccaagaga agcatcagtt 1261 ggaaatcacc aatttgaaat atgaaaatga gtcgttgaga acccgtttga gagacgttgt 1321 caactcaccg ctatccgatg cggaaaagca ccaaatcata caagattccc agcgtctaca 1381 tagttctgcg ccagcctcca ttgcactacc gacatcctca gacaatgata atggtggcac 1441 accttgcctt acgcccgact gggataagca ttcctcttct agtgaaatat ctgtagcttg 1501 tctgcaagat aagatcatac aaatggaaga gacccattac tcgaccaatg aagaattgca 1561 agccactctc caggaactat ccgatttgca ggctcaattg agtgatgccc aaaccgagaa 1621 tgaacgttta gccgaagaaa aggacgttct ctttcagtcg ttgtgtcggc aaactgaaaa 1681 actcaacgat tctcgcaccc aaatcaataa tctacaagaa cttttgctaa gagatgctaa 1741 acaaaacacc gccgaagagg ctgtttcctc ggaaagggaa aagaaattaa tggatctaat 1801 caaaactgcc caagatgaac gtgaagcggc cttagtcaag caggaggaac tcaatgctga 1861 actgcaagat ttaaggcaaa ccaatgaaag ctatacggca gagcaaaccc gccttaggga 1921 acgcattgct ctgctagagt cctccataga tgcggaacat tctcagcgca aacaaatgga 1981 actacaactg caagcagcca aagaggaaat atcacatggt ataatcgaaa taaatcgatt 2041 gaccacccta ctagagaatg ccaaatcaaa aattgaagaa ctcgaacagg atctggctcg 2101 aggcgataaa accgatctta gtgatctttt agatgcggcg cgcaaagaaa aagacttatt 2161 ggaagaaaaa gtagccgaaa tacaagatca gtggtctcgc agtcaggccg aggttaggcg 2221 actcaaggat caaattgccg atttaactga ggaactcaaa gtttccaaaa acaattcgaa 2281 atgtgccctc tcccatctcg aataccggct ggaccaagtt caacaggaga aggataagct 2341 ttcagccgaa caccaacaac tctgcgagag tacaagtgaa ttacaagtgc aatgcaaatg 2401 tcatttggag gacaaaaatc aactccagtc actgctgagt gaaacgcaaa aacatttggc 2461 tgacgtcgaa cgtaaattaa acgacaccca acagcaactg gaagatttgc aacaattacg 2521 aaaacaagaa gccgaagaat ggcaacaatt ccaatcggat ctactgatga ccgtgcgggt 2581 agccaatgat tttaagactg aagcccttag tgctagagaa caattagtat tggataataa 2641 gacgcaaaag gagaaaatac gtatgttgga acaacaaatt gagaaattaa acaaacaaca 2701 acaacaacaa accgagacac agcaatcagt gtacaacaca gtatcgactg tacaacaaga 2761 aatggcctcg agacgcagca aagtaggcag cttttcaaga caagactcac gtttgtctgt 2821 caaaacttta attgaaagca tagaaaataa taaacagacc gctaaagcag aggagccaga 2881 gtctcgctac agctcttcat caagtttaaa tagtagtagt actccagaaa taacacccag 2941 tgctataccg ttagtcacta ccaatacgaa caatccagac tggtctgaaa atgtttctag 3001 acttacaccc ttaataggca gcttaaatac tgcaacaacg gcagcagcac ccaataatat 3061 tacaacacca atggtaccag cattgacaac agcaacaacc aagggcccac taagagaaca 3121 gcaacaacaa caatctgtag tatccaattt acacataagc agtctcaaca atgtttccaa 3181 atctctgtta agtggtgaac gcaaagatcc tttgaacatg ctggctaaga atggtggttc 3241 aaagcgcaat gctttgttga aatggtgtca aaataaaact gtcggttatc gcaatataga 3301 aatcacaaat ttcagttcat cctggaatga tggcttggca ttttgtgcaa ttttacattc 3361 ctatttaccg gatcgcattc cttatgatac tttaagtcca gccaacaaaa gacgtaattt 3421 ctcattggcc tttgcggcag ctgaaagcgt tggtataccc acaacactga acatcaatga 3481 tatgtgtcaa atcgaacgtc ccgattggac tcaaataatg tcttatgtta cagctattta 3541 taaatatttt gaaacttaag tgcatcgctt tgcattgcat tgtattgcat atttatgatt 3601 tacaatttta tttaattttt taacggcata ctataatttt taacaactgt tggctcatat 3661 ttttattgtt aacgaaatac aaatgttatt ttttattata tatacataaa tacataggcg 3721 cgagctcctt tccttttcct catacacctc gaaacgttcg cgttgaatct tttaataatt 3781 tttgatttta tccatacttt actcgtacca acaaccaccc ctctgaatga agccaaattt 3841 ttttattttt ttttttcatt tcattattat tttttttatt atttatttaa ttgtgcattc 3901 ttcttttaat tacaaaatac aataattata ataaattttc aattaagaat atgtaaatat 3961 tttgcaaaag atccattata agctactaaa ataaactat