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LOCUS XM_013244437 4089 bp mRNA linear INV 02-SEP-2023 transcript variant X1, mRNA. ACCESSION XM_013244437 VERSION XM_013244437.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013244437.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4089 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4089 /gene="LOC106082107" /note="cytospin-A; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:106082107" CDS 467..3649 /gene="LOC106082107" /codon_start=1 /product="cytospin-A" /protein_id="XP_013099891.1" /db_xref="GeneID:106082107" /translation="MIKLKSLFRRGQTPSQSSSKHSSSSNSSNNNRNKSQSTQSLNTA IENEDKKQQAGAGATSTKFYPDAQNPPIVQIEGSSSERGVDVGDDRLNNSYHSLEANQ LAQANAGAIAAGQHAHTLPHKKSKGGTSKKGQKQPKPLPVAPKGTAPTVVAPPPGVGG DVVMSSMAAVAPGSQSSSVQPGSATSLSTSHSNPAISATTANAAGTSANDLYALNPAF MAAAAAASYQFINNEQQQILEASNIKMQELQSQLDRLARDKMLAESRVTELLPYQNEV TKLKSDLVKMQSAQEKHQLEITNLKYENESLRTRLRDVVNSPLSDAEKHQIIQDSQRL HSSAPASIALPTSSDNDNGGTPCLTPDWDKHSSSSEISVACLQDKIIQMEETHYSTNE ELQATLQELSDLQAQLSDAQTENERLAEEKDVLFQSLCRQTEKLNDSRTQINNLQELL LRDAKQNTAEEAVSSEREKKLMDLIKTAQDEREAALVKQEELNAELQDLRQTNESYTA EQTRLRERIALLESSIDAEHSQRKQMELQLQAAKEEISHGIIEINRLTTLLENAKSKI EELEQDLARGDKTDLSDLLDAARKEKDLLEEKVAEIQDQWSRSQAEVRRLKDQIADLT EELKVSKNNSKCALSHLEYRLDQVQQEKDKLSAEHQQLCESTSELQVQCKCHLEDKNQ LQSLLSETQKHLADVERKLNDTQQQLEDLQQLRKQEAEEWQQFQSDLLMTVRVANDFK TEALSAREQLVLDNKTQKEKIRMLEQQIEKLNKQQQQQTETQQSVYNTVSTVQQEMAS RRSKVGSFSRQDSRLSVKTLIESIENNKQTAKAEEPESRYSSSSSLNSSSTPEITPSA IPLVTTNTNNPDWSENVSRLTPLIGSLNTATTAAAPNNITTPMVPALTTATTKGPLRE QQQQQSVVSNLHISSLNNVSKSLLSGERKDPLNMLAKNGGSKRNALLKWCQNKTVGYR NIEITNFSSSWNDGLAFCAILHSYLPDRIPYDTLSPANKRRNFSLAFAAAESVGIPTT LNINDMCQIERPDWTQIMSYVTAIYKYFET" misc_feature <1145..>2182 /gene="LOC106082107" /note="Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; Region: YhaN; COG4717" /db_xref="CDD:443752" misc_feature 1685..>2716 /gene="LOC106082107" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:274008" misc_feature 3308..3643 /gene="LOC106082107" /note="calponin homology (CH) domain found in the cytospin family; Region: CH_CYTS; cd21199" /db_xref="CDD:409048" misc_feature order(3332..3334,3344..3346,3494..3496,3500..3505, 3512..3517,3521..3523,3545..3571,3593..3595,3599..3604, 3608..3613,3620..3625,3632..3634) /gene="LOC106082107" /note="putative actin binding site [polypeptide binding]; other site" /db_xref="CDD:409048" polyA_site 4089 /gene="LOC106082107" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gttcatcgta cgagcgaagt tggtcggatg tttggcgcgg cgggttgatc gagcggttga 61 ttttgtgttt gtgtgtgtgt gttgtgtccc tcagtaaata ggagtttgtg tgaaattttg 121 ttggcttttc tttgcccaca aaacttctac aaagcgatcg gttgctgtat tcgttgtttt 181 tgtatttctc aatggaaata aaatagacaa aagtcgctac aaatgaacta aaatgaactg 241 gaaatgtgta atgaaccata ccatcgaaat attttataaa aagaacaaca acgatcttag 301 aaagaaaagt gtttcgtcaa actcgaaaat tcgtcttttg ttataaaaaa aagagagcaa 361 tataaaaaaa atcgaaccac cttggggaaa ttggtacaag aatttctcag aactacaacg 421 acactctgtc cataattaca accaacaata ctaaaaattt ggcaaaatga ttaaattgaa 481 atcactgttt cgcagagggc aaaccccctc acagtcctcg tctaaacatt ccagcagcag 541 caacagtagt aacaacaatc gcaacaaatc ccaatcaacc cagtctctga acactgccat 601 cgagaacgag gataaaaagc aacaggctgg agcaggagca acatcaacga aattttatcc 661 tgatgcccag aatcccccca ttgtgcaaat agaaggttca tcgagtgaac gcggtgttga 721 tgtgggcgat gatcgtttga ataatagcta tcatagtttg gaagcgaatc aattggcaca 781 agccaacgct ggcgctattg cagctggaca acacgctcac actttacccc acaaaaagag 841 taagggaggt acatcgaaaa agggccaaaa acaaccaaag cctttgccag ttgcccccaa 901 aggcactgca ccaacggttg ttgctcctcc accgggtgta ggcggcgatg tagtaatgtc 961 ttcaatggct gctgtggcac caggttccca aagctcttcc gttcagccgg gctctgcgac 1021 ctcgttatca acatcacact ctaaccctgc catatcagcg acgacagcta atgctgctgg 1081 tacttccgcc aatgatttgt atgccttaaa tcctgcattt atggctgccg cagcagcagc 1141 cagctatcag tttatcaaca acgaacaaca acaaattcta gaggcttcaa atattaaaat 1201 gcaagagttg caatcccaac tggatcgttt ggctcgtgat aaaatgctgg cagaatcacg 1261 agtcacagaa ttgttgccgt atcaaaacga agtaaccaaa ctaaaaagtg atttagtgaa 1321 aatgcagagt gcccaagaga agcatcagtt ggaaatcacc aatttgaaat atgaaaatga 1381 gtcgttgaga acccgtttga gagacgttgt caactcaccg ctatccgatg cggaaaagca 1441 ccaaatcata caagattccc agcgtctaca tagttctgcg ccagcctcca ttgcactacc 1501 gacatcctca gacaatgata atggtggcac accttgcctt acgcccgact gggataagca 1561 ttcctcttct agtgaaatat ctgtagcttg tctgcaagat aagatcatac aaatggaaga 1621 gacccattac tcgaccaatg aagaattgca agccactctc caggaactat ccgatttgca 1681 ggctcaattg agtgatgccc aaaccgagaa tgaacgttta gccgaagaaa aggacgttct 1741 ctttcagtcg ttgtgtcggc aaactgaaaa actcaacgat tctcgcaccc aaatcaataa 1801 tctacaagaa cttttgctaa gagatgctaa acaaaacacc gccgaagagg ctgtttcctc 1861 ggaaagggaa aagaaattaa tggatctaat caaaactgcc caagatgaac gtgaagcggc 1921 cttagtcaag caggaggaac tcaatgctga actgcaagat ttaaggcaaa ccaatgaaag 1981 ctatacggca gagcaaaccc gccttaggga acgcattgct ctgctagagt cctccataga 2041 tgcggaacat tctcagcgca aacaaatgga actacaactg caagcagcca aagaggaaat 2101 atcacatggt ataatcgaaa taaatcgatt gaccacccta ctagagaatg ccaaatcaaa 2161 aattgaagaa ctcgaacagg atctggctcg aggcgataaa accgatctta gtgatctttt 2221 agatgcggcg cgcaaagaaa aagacttatt ggaagaaaaa gtagccgaaa tacaagatca 2281 gtggtctcgc agtcaggccg aggttaggcg actcaaggat caaattgccg atttaactga 2341 ggaactcaaa gtttccaaaa acaattcgaa atgtgccctc tcccatctcg aataccggct 2401 ggaccaagtt caacaggaga aggataagct ttcagccgaa caccaacaac tctgcgagag 2461 tacaagtgaa ttacaagtgc aatgcaaatg tcatttggag gacaaaaatc aactccagtc 2521 actgctgagt gaaacgcaaa aacatttggc tgacgtcgaa cgtaaattaa acgacaccca 2581 acagcaactg gaagatttgc aacaattacg aaaacaagaa gccgaagaat ggcaacaatt 2641 ccaatcggat ctactgatga ccgtgcgggt agccaatgat tttaagactg aagcccttag 2701 tgctagagaa caattagtat tggataataa gacgcaaaag gagaaaatac gtatgttgga 2761 acaacaaatt gagaaattaa acaaacaaca acaacaacaa accgagacac agcaatcagt 2821 gtacaacaca gtatcgactg tacaacaaga aatggcctcg agacgcagca aagtaggcag 2881 cttttcaaga caagactcac gtttgtctgt caaaacttta attgaaagca tagaaaataa 2941 taaacagacc gctaaagcag aggagccaga gtctcgctac agctcttcat caagtttaaa 3001 tagtagtagt actccagaaa taacacccag tgctataccg ttagtcacta ccaatacgaa 3061 caatccagac tggtctgaaa atgtttctag acttacaccc ttaataggca gcttaaatac 3121 tgcaacaacg gcagcagcac ccaataatat tacaacacca atggtaccag cattgacaac 3181 agcaacaacc aagggcccac taagagaaca gcaacaacaa caatctgtag tatccaattt 3241 acacataagc agtctcaaca atgtttccaa atctctgtta agtggtgaac gcaaagatcc 3301 tttgaacatg ctggctaaga atggtggttc aaagcgcaat gctttgttga aatggtgtca 3361 aaataaaact gtcggttatc gcaatataga aatcacaaat ttcagttcat cctggaatga 3421 tggcttggca ttttgtgcaa ttttacattc ctatttaccg gatcgcattc cttatgatac 3481 tttaagtcca gccaacaaaa gacgtaattt ctcattggcc tttgcggcag ctgaaagcgt 3541 tggtataccc acaacactga acatcaatga tatgtgtcaa atcgaacgtc ccgattggac 3601 tcaaataatg tcttatgtta cagctattta taaatatttt gaaacttaag tgcatcgctt 3661 tgcattgcat tgtattgcat atttatgatt tacaatttta tttaattttt taacggcata 3721 ctataatttt taacaactgt tggctcatat ttttattgtt aacgaaatac aaatgttatt 3781 ttttattata tatacataaa tacataggcg cgagctcctt tccttttcct catacacctc 3841 gaaacgttcg cgttgaatct tttaataatt tttgatttta tccatacttt actcgtacca 3901 acaaccaccc ctctgaatga agccaaattt ttttattttt ttttttcatt tcattattat 3961 tttttttatt atttatttaa ttgtgcattc ttcttttaat tacaaaatac aataattata 4021 ataaattttc aattaagaat atgtaaatat tttgcaaaag atccattata agctactaaa 4081 ataaactat