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LOCUS XM_013243339 4570 bp mRNA linear INV 02-SEP-2023 protein Shal (LOC106081414), transcript variant X3, mRNA. ACCESSION XM_013243339 VERSION XM_013243339.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013243339.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4570 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4570 /gene="LOC106081414" /note="potassium voltage-gated channel protein Shal; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:106081414" CDS 1407..3125 /gene="LOC106081414" /codon_start=1 /product="potassium voltage-gated channel protein Shal isoform X2" /protein_id="XP_013098793.1" /db_xref="GeneID:106081414" /translation="MASVAAWLPFARAAAIGWVPIATNPLPPAPIPKDRRKTDDEKLL INVSGRRFETWRNTLEKYPDTLLGSNEREFFYDEDCKEYFFDRDPDIFRHILNYYRTG KLHYPKHECLTSYDEELAFFGIMPDVIGDCCYEDYRDRKRENAERLMDDKLSENGDQN LPQLTDIRQKMWRAFENPHTSTAALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGT LPCGERYKIVFFCLDTACVMIFTAEYLLRLFAAPDRCKFVRSVMSIIDVVAIMPYYIG LGITDNDDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLVFSLAMA IIIFATVMFYAEKNVHGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSL SGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQRKARLARIRIAKASSGAAFVNKKKA AEARWAAQESGIELDDNYRDEDIFELQHHHLLRCLEKTTDREFVELEIPFNGGQPKRP RSPSPMASPAHSTNSAMGLVQSCCGRCCSQRYQACGKYMPATGNAQSNQNNQPMDGTY LVEASF" misc_feature 1422..1838 /gene="LOC106081414" /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster potassium voltage-gated channel protein Shal and similar proteins; Region: BTB_POZ_Shal-like; cd18420" /db_xref="CDD:349727" misc_feature order(1422..1460,1464..1469,1479..1484,1494..1496, 1503..1505,1512..1517,1521..1523,1569..1571) /gene="LOC106081414" /note="putative beta subunit interface [polypeptide binding]; other site" /db_xref="CDD:349727" misc_feature order(1530..1532,1542..1544,1548..1571,1578..1580, 1656..1658,1662..1670,1674..1676,1683..1685,1695..1697, 1704..1709,1713..1715,1719..1721,1728..1730,1734..1739, 1743..1748,1755..1757,1800..1805) /gene="LOC106081414" /note="putative tetramer interface [polypeptide binding]; other site" /db_xref="CDD:349727" misc_feature 1968..2651 /gene="LOC106081414" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 2817..3014 /gene="LOC106081414" /note="Domain of unknown function (DUF3399); Region: DUF3399; pfam11879" /db_xref="CDD:463381" polyA_site 4570 /gene="LOC106081414" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tctatttgca gcagtgctga gcaaagagcc acggaccaga actcagtgtc cgtgtggcat 61 atactcgaac gatttgtggt ggaaaaaatt gcggaaaacg aaaggcaagc taacgagccc 121 aacagacaaa tacatctttt tttgcacaaa aaaggaaaaa gaacagaaaa ctttaataga 181 aagaattttc tgaaaagtga ttgattttat gaaaaaagga aatgtcacaa caacatggag 241 aaatacatgc taagataaaa taaaataaag tttccaacta aaaaaaaatt gatagcaaaa 301 aattagaaaa cagaaaaaat tgattaaaag tagaaaaaaa gcaaaaaaga agcaaaggaa 361 ttaagagcag cagcgagcaa gcaaatccat gaaaaaaagc taaatccaaa aaaaagaaag 421 gaaaaaaaac caaagcaatg aaatttcaac gaaaagggaa aatttgataa aagcaaaaaa 481 aaaaagagtg gccgaacacc acttgccata ctcccaacac catcaaaaat aacaacaaca 541 acaacacatc aaccacctaa tgccaccaaa gcaacacccc ccaacccgct taacagaaac 601 ggtgccatag aaaacgaaaa gtagtagtcg tcgtcgtcgt cgttatagca gtcgtcggca 661 ataacagcaa caacaacagc aactacaata aaaagaaaaa taaaagaaaa acttgctgct 721 gctgctcaag tgtttgtgga agaattaaaa caaaaacaac aactacaaca ataacaataa 781 tataatcatc ataatcaaca acatagtcat aattatccac aaagtcaacg ccgccatatt 841 cgacgtcttc acagtcaacg tcaacaacat cgttgtcaac aataacggga acgagaagga 901 atatatccag aaaaaaaact tttgtgtgtc atcaaaaaaa tgtcagcaat aacaaaaagc 961 aatataccag tgagaaaaag agggtcttaa gagcagcacc acacagagtc caaaacaaca 1021 acgagaggct ggtagaaggt tacaacaaga aaaaagggca gctttagcaa ttgaactgca 1081 aaaagagtgc cagttactaa gccaccgcca aaataatctc tccaacaaca acaacaataa 1141 aagctgaaag ttactaaacc tcattttgag ttctggctca tggtgttgtt gaactacaac 1201 tattgagagt tacattaact ctctgccttt tttgccaaaa gcaaaacaaa ataaacaccg 1261 caacggctaa cgtgagcacc gccataccag gctctagctg agcaactcgc atttggtccc 1321 atctccatcg cagaaagcca acccacccac ccattcacat tggggtcttt ggtttagttt 1381 tgcattgaaa cattccgcca catagcatgg cctcggtcgc cgcttggctg ccatttgcac 1441 gggcggcggc cattggttgg gtgcccatag ccaccaatcc tttgcctcca gctcccatac 1501 ccaaagatcg ccgcaaaacc gatgatgaga agctgctgat caatgtttcc ggtcgtcgtt 1561 ttgagacttg gcgcaatacc ctagaaaaat atcccgacac cttgttgggc tccaacgaac 1621 gtgaattctt ctacgatgag gactgtaaag agtatttctt tgatcgagat cctgacatat 1681 ttcgccacat cttgaactac tatcgtaccg ggaaattgca ttatcccaaa catgaatgtc 1741 tcaccagcta cgatgaggaa ttggccttct tcggcatcat gcccgatgtc attggcgact 1801 gttgctacga agactatcgc gatcgcaagc gtgagaatgc tgaacgtctt atggatgaca 1861 aactgtcgga gaatggtgat cagaacctgc cgcagctgac agacatacgc cagaaaatgt 1921 ggcgagcctt cgagaatcca cacacatcaa ctgcagccct agtgttctac tatgtgaccg 1981 gcttctttat tgccgtctcc gtcatggcca atgtggtgga aacggtgcct tgtggtcatc 2041 gtcccggccg agctggtaca ctgccctgtg gcgaacgcta caaaattgtt ttcttctgct 2101 tggacacagc ctgcgtcatg atcttcaccg ccgaatatct gctgcgtctg tttgccgctc 2161 ccgatcgttg caaattcgtg cgcagtgtca tgagtatcat tgatgtggtg gccattatgc 2221 cctactacat aggcctgggc attacggaca acgatgatgt gagcggtgca tttgtaacgt 2281 tgcgcgtctt ccgcgtattt cgtattttta agttctcacg tcactcgcaa ggtctgcgaa 2341 ttttgggcta caccctcaaa tcttgcgctt ccgaattggg tttcctggta ttctcattgg 2401 ccatggccat tattatattc gccacggtta tgttctatgc tgagaagaat gtgcatggta 2461 caaatttcac ctcaattccg gcggcatttt ggtataccat tgtcacaatg acaacattgg 2521 gttatggtga catggtaccg gaaacaatag ctggcaaaat tgtgggaggt gtctgctcgc 2581 tcagtggtgt acttgtgatc gccttacccg tacctgttat tgtatctaac tttagtagaa 2641 tttatcatca aaatcaacga gctgataaac gaaaagcgca aaggaaagcc cgtttggcgc 2701 gcatacgcat tgccaaagct tcatcaggcg ctgcatttgt taacaaaaag aaggctgccg 2761 aagcccgttg ggctgcccaa gagtctggca ttgaactgga tgacaattat cgcgatgagg 2821 atatctttga gctgcagcat catcatctac tgagatgttt agagaagaca acggatcgtg 2881 aatttgtgga attggaaata cccttcaatg gaggccagcc caagcgtccc agatccccct 2941 ctcccatggc cagtccggct cattccacca acagtgccat gggtctggtg caatcatgtt 3001 gtggacgttg ctgttcccaa cgttatcagg cctgtggaaa atatatgccc gccaccggta 3061 acgctcaaag taaccaaaac aatcaaccca tggatggcac ctatctggtg gaggcctcat 3121 tctagacctg atttcttaaa atccaaacaa ccaactactt taactagtta tgtagtcttt 3181 aaaaacccat ctcttaagat ttttatttat tttcatatgg tttatggttt agaccataaa 3241 tccctcttaa caacaacaaa aagtttcaac taggggagct taaaaatatg aaaaaaaaca 3301 cacacacaaa ttgagaaaca aaaaacccaa tactcaaatg aaaaccaaaa tgttatcaat 3361 aaatagttca ataataattt taaaacaaaa caataacaaa aaataaatta ttaaaaaaat 3421 aaatttctta gagattaaca caagaaaatg ataacttaga ggaactgaaa acaaaacagt 3481 tgagaaaaaa gaattaatct cccaacaaca aagaaaaact ttaaattcaa acacaatttc 3541 ggtgttaact cgcaattaag aaagttgact ttctcattat aagttttttt tttaattact 3601 tttagttcaa actgttaaat agtgtcatag tctaaaaaca aaataactat caaggaaaag 3661 aaaaatagtt ttaaaataaa aaaaaaaaaa tttagaaaaa attttcaaaa ttaaaaaaaa 3721 ctcctaattt tcccttatta tgaaaaaaga aaacaaaatt ttgattaagt agcaaatata 3781 tgaaataaaa aaaaaataat tttatttaat ttttgtaata ctcctaataa aactatcata 3841 gattttagcc aactccccct taacatagaa aaaacaaaac aaaattggtt taagattttt 3901 tttcttttcc aaaaccaaaa aaaaaaaaaa taaaccaaat caaccttaaa atcaaaaatt 3961 ggtcataagt ttctagaaga aaaaaattaa aaaaaaaaaa aaaattcaac cattccataa 4021 gcccccactc aattctgttt caagataaac ccactattaa ttttcaaaaa aaaaaaaaca 4081 caccctctca attagtaaca cagaactata aaaacaagaa ttaaaagaaa gaagaatgct 4141 gccaaaaaca agaattcata aaaaaaaaca attgttaaac tatcatgaaa aagaaactcc 4201 cacaataaag aaaaactaat attcattcat tgaaaatttt ttgctaatga atgaaaatct 4261 ccccccttta attaactaaa caaagaattc attataacta aacaaacaaa ccagaagaat 4321 aagaaaaaaa aaaaataaaa aaagaacaaa aaatacatgc aaaaacctca aaacacaaaa 4381 tgagaacata atttaacttc catgctctaa gctgttcttt gaattttttt gtgtgtgtct 4441 gtgtctataa actaaaaact aaaaaaaaag aaattaagaa caaattgaaa aaaaaaacac 4501 aaaaacattt aaacgaaaag aaataacaga aaccctcagc aacaagaaga aaaaagagaa 4561 ttaagtaaaa