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LOCUS XM_013243338 4613 bp mRNA linear INV 02-SEP-2023 protein Shal (LOC106081414), transcript variant X2, mRNA. ACCESSION XM_013243338 VERSION XM_013243338.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013243338.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4613 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4613 /gene="LOC106081414" /note="potassium voltage-gated channel protein Shal; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:106081414" CDS 1411..3168 /gene="LOC106081414" /codon_start=1 /product="potassium voltage-gated channel protein Shal isoform X1" /protein_id="XP_013098792.1" /db_xref="GeneID:106081414" /translation="MASVAAWLPFARAAAIGWVPIATNPLPPAPIPKDRRKTDDEKLL INVSGRRFETWRNTLEKYPDTLLGSNEREFFYDEDCKEYFFDRDPDIFRHILNYYRTG KLHYPKHECLTSYDEELAFFGIMPDVIGDCCYEDYRDRKRENAERLMDDKLSENGDQN LPQLTDIRQKMWRAFENPHTSTAALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGT LPCGERYKIVFFCLDTACVMIFTAEYLLRLFAAPDRCKFVRSVMSIIDVVAIMPYYIG LGITDNDDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLVFSLAMA IIIFATVMFYAEKNVHGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSL SGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQRKARLARIRIAKASSGAAFVNKKKA AEARWAAQESGIELDDNYRDEDIFELQHHHLLRCLEKTTAIDPNDILLAKASDREFVE LEIPFNGGQPKRPRSPSPMASPAHSTNSAMGLVQSCCGRCCSQRYQACGKYMPATGNA QSNQNNQPMDGTYLVEASF" misc_feature 1426..1842 /gene="LOC106081414" /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster potassium voltage-gated channel protein Shal and similar proteins; Region: BTB_POZ_Shal-like; cd18420" /db_xref="CDD:349727" misc_feature order(1426..1464,1468..1473,1483..1488,1498..1500, 1507..1509,1516..1521,1525..1527,1573..1575) /gene="LOC106081414" /note="putative beta subunit interface [polypeptide binding]; other site" /db_xref="CDD:349727" misc_feature order(1534..1536,1546..1548,1552..1575,1582..1584, 1660..1662,1666..1674,1678..1680,1687..1689,1699..1701, 1708..1713,1717..1719,1723..1725,1732..1734,1738..1743, 1747..1752,1759..1761,1804..1809) /gene="LOC106081414" /note="putative tetramer interface [polypeptide binding]; other site" /db_xref="CDD:349727" misc_feature 1972..2655 /gene="LOC106081414" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 2821..3057 /gene="LOC106081414" /note="Domain of unknown function (DUF3399); Region: DUF3399; pfam11879" /db_xref="CDD:463381" polyA_site 4613 /gene="LOC106081414" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tctatttgca gcagtgctga gcaaagagcc acggaccaga actcagtgtc cgtgtggcat 61 atactcgaac gatttgtggt ggaaaaaatt gcggaaaacg aaaggcaagc taacgagccc 121 aacagacaaa tacatctttt tttgcacaaa aaaggaaaaa gaacagaaaa ctttaataga 181 aagaattttc tgaaaagtga ttgattttat gaaaaaagga aatgtcacaa caacatggag 241 aaatacatgc taagataaaa taaaataaag tttccaacta aaaaaaaatt gatagcaaaa 301 aattagaaaa cagaaaaaat tgattaaaag tagaaaaaaa gcaaaaaaga agcaaaggaa 361 ttaagagcag cagcgagcaa gcaaatccat gaaaaaaagc taaatccaaa aaaaagaaag 421 gaaaaaaaac caaagcaatg aaatttcaac gaaaagggaa aatttgataa aagcaaaaaa 481 aaaaagagtg gccgaacacc acttgccata ctcccaacac catcaaaaat aacaacaaca 541 acaacacatc aaccacctaa tgccaccaaa gcaacacccc ccaacccgct taacagaaac 601 ggtgccatag aaaacgaaaa gtagtagtcg tcgtcgtcgt cgttatagca gtcgtcggca 661 ataacagcaa caacaacagc aactacaata aaaagaaaaa taaaagaaaa acttgctgct 721 gctgctcaag tgtttgtgga agaattaaaa caaaaacaac aactacaaca ataacaataa 781 tataatcatc ataatcaaca acatagtcat aattatccac aaagtcaacg ccgccatatt 841 cgacgtcttc acagtcaacg tcaacaacat cgttgtcaac aataacggga acgagaagga 901 atatgtagat ccagaaaaaa aacttttgtg tgtcatcaaa aaaatgtcag caataacaaa 961 aagcaatata ccagtgagaa aaagagggtc ttaagagcag caccacacag agtccaaaac 1021 aacaacgaga ggctggtaga aggttacaac aagaaaaaag ggcagcttta gcaattgaac 1081 tgcaaaaaga gtgccagtta ctaagccacc gccaaaataa tctctccaac aacaacaaca 1141 ataaaagctg aaagttacta aacctcattt tgagttctgg ctcatggtgt tgttgaacta 1201 caactattga gagttacatt aactctctgc cttttttgcc aaaagcaaaa caaaataaac 1261 accgcaacgg ctaacgtgag caccgccata ccaggctcta gctgagcaac tcgcatttgg 1321 tcccatctcc atcgcagaaa gccaacccac ccacccattc acattggggt ctttggttta 1381 gttttgcatt gaaacattcc gccacatagc atggcctcgg tcgccgcttg gctgccattt 1441 gcacgggcgg cggccattgg ttgggtgccc atagccacca atcctttgcc tccagctccc 1501 atacccaaag atcgccgcaa aaccgatgat gagaagctgc tgatcaatgt ttccggtcgt 1561 cgttttgaga cttggcgcaa taccctagaa aaatatcccg acaccttgtt gggctccaac 1621 gaacgtgaat tcttctacga tgaggactgt aaagagtatt tctttgatcg agatcctgac 1681 atatttcgcc acatcttgaa ctactatcgt accgggaaat tgcattatcc caaacatgaa 1741 tgtctcacca gctacgatga ggaattggcc ttcttcggca tcatgcccga tgtcattggc 1801 gactgttgct acgaagacta tcgcgatcgc aagcgtgaga atgctgaacg tcttatggat 1861 gacaaactgt cggagaatgg tgatcagaac ctgccgcagc tgacagacat acgccagaaa 1921 atgtggcgag ccttcgagaa tccacacaca tcaactgcag ccctagtgtt ctactatgtg 1981 accggcttct ttattgccgt ctccgtcatg gccaatgtgg tggaaacggt gccttgtggt 2041 catcgtcccg gccgagctgg tacactgccc tgtggcgaac gctacaaaat tgttttcttc 2101 tgcttggaca cagcctgcgt catgatcttc accgccgaat atctgctgcg tctgtttgcc 2161 gctcccgatc gttgcaaatt cgtgcgcagt gtcatgagta tcattgatgt ggtggccatt 2221 atgccctact acataggcct gggcattacg gacaacgatg atgtgagcgg tgcatttgta 2281 acgttgcgcg tcttccgcgt atttcgtatt tttaagttct cacgtcactc gcaaggtctg 2341 cgaattttgg gctacaccct caaatcttgc gcttccgaat tgggtttcct ggtattctca 2401 ttggccatgg ccattattat attcgccacg gttatgttct atgctgagaa gaatgtgcat 2461 ggtacaaatt tcacctcaat tccggcggca ttttggtata ccattgtcac aatgacaaca 2521 ttgggttatg gtgacatggt accggaaaca atagctggca aaattgtggg aggtgtctgc 2581 tcgctcagtg gtgtacttgt gatcgcctta cccgtacctg ttattgtatc taactttagt 2641 agaatttatc atcaaaatca acgagctgat aaacgaaaag cgcaaaggaa agcccgtttg 2701 gcgcgcatac gcattgccaa agcttcatca ggcgctgcat ttgttaacaa aaagaaggct 2761 gccgaagccc gttgggctgc ccaagagtct ggcattgaac tggatgacaa ttatcgcgat 2821 gaggatatct ttgagctgca gcatcatcat ctactgagat gtttagagaa gacaacggct 2881 atagacccaa atgacatact actggctaag gcaagtgatc gtgaatttgt ggaattggaa 2941 atacccttca atggaggcca gcccaagcgt cccagatccc cctctcccat ggccagtccg 3001 gctcattcca ccaacagtgc catgggtctg gtgcaatcat gttgtggacg ttgctgttcc 3061 caacgttatc aggcctgtgg aaaatatatg cccgccaccg gtaacgctca aagtaaccaa 3121 aacaatcaac ccatggatgg cacctatctg gtggaggcct cattctagac ctgatttctt 3181 aaaatccaaa caaccaacta ctttaactag ttatgtagtc tttaaaaacc catctcttaa 3241 gatttttatt tattttcata tggtttatgg tttagaccat aaatccctct taacaacaac 3301 aaaaagtttc aactagggga gcttaaaaat atgaaaaaaa acacacacac aaattgagaa 3361 acaaaaaacc caatactcaa atgaaaacca aaatgttatc aataaatagt tcaataataa 3421 ttttaaaaca aaacaataac aaaaaataaa ttattaaaaa aataaatttc ttagagatta 3481 acacaagaaa atgataactt agaggaactg aaaacaaaac agttgagaaa aaagaattaa 3541 tctcccaaca acaaagaaaa actttaaatt caaacacaat ttcggtgtta actcgcaatt 3601 aagaaagttg actttctcat tataagtttt ttttttaatt acttttagtt caaactgtta 3661 aatagtgtca tagtctaaaa acaaaataac tatcaaggaa aagaaaaata gttttaaaat 3721 aaaaaaaaaa aaatttagaa aaaattttca aaattaaaaa aaactcctaa ttttccctta 3781 ttatgaaaaa agaaaacaaa attttgatta agtagcaaat atatgaaata aaaaaaaaat 3841 aattttattt aatttttgta atactcctaa taaaactatc atagatttta gccaactccc 3901 ccttaacata gaaaaaacaa aacaaaattg gtttaagatt ttttttcttt tccaaaacca 3961 aaaaaaaaaa aaataaacca aatcaacctt aaaatcaaaa attggtcata agtttctaga 4021 agaaaaaaat taaaaaaaaa aaaaaaattc aaccattcca taagccccca ctcaattctg 4081 tttcaagata aacccactat taattttcaa aaaaaaaaaa acacaccctc tcaattagta 4141 acacagaact ataaaaacaa gaattaaaag aaagaagaat gctgccaaaa acaagaattc 4201 ataaaaaaaa acaattgtta aactatcatg aaaaagaaac tcccacaata aagaaaaact 4261 aatattcatt cattgaaaat tttttgctaa tgaatgaaaa tctcccccct ttaattaact 4321 aaacaaagaa ttcattataa ctaaacaaac aaaccagaag aataagaaaa aaaaaaaata 4381 aaaaaagaac aaaaaataca tgcaaaaacc tcaaaacaca aaatgagaac ataatttaac 4441 ttccatgctc taagctgttc tttgaatttt tttgtgtgtg tctgtgtcta taaactaaaa 4501 actaaaaaaa aagaaattaa gaacaaattg aaaaaaaaaa cacaaaaaca tttaaacgaa 4561 aagaaataac agaaaccctc agcaacaaga agaaaaaaga gaattaagta aaa