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LOCUS XM_013243336 4609 bp mRNA linear INV 02-SEP-2023 protein Shal (LOC106081414), transcript variant X1, mRNA. ACCESSION XM_013243336 VERSION XM_013243336.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013243336.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4609 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4609 /gene="LOC106081414" /note="potassium voltage-gated channel protein Shal; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:106081414" CDS 1407..3164 /gene="LOC106081414" /codon_start=1 /product="potassium voltage-gated channel protein Shal isoform X1" /protein_id="XP_013098790.1" /db_xref="GeneID:106081414" /translation="MASVAAWLPFARAAAIGWVPIATNPLPPAPIPKDRRKTDDEKLL INVSGRRFETWRNTLEKYPDTLLGSNEREFFYDEDCKEYFFDRDPDIFRHILNYYRTG KLHYPKHECLTSYDEELAFFGIMPDVIGDCCYEDYRDRKRENAERLMDDKLSENGDQN LPQLTDIRQKMWRAFENPHTSTAALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGT LPCGERYKIVFFCLDTACVMIFTAEYLLRLFAAPDRCKFVRSVMSIIDVVAIMPYYIG LGITDNDDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLVFSLAMA IIIFATVMFYAEKNVHGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSL SGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQRKARLARIRIAKASSGAAFVNKKKA AEARWAAQESGIELDDNYRDEDIFELQHHHLLRCLEKTTAIDPNDILLAKASDREFVE LEIPFNGGQPKRPRSPSPMASPAHSTNSAMGLVQSCCGRCCSQRYQACGKYMPATGNA QSNQNNQPMDGTYLVEASF" misc_feature 1422..1838 /gene="LOC106081414" /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster potassium voltage-gated channel protein Shal and similar proteins; Region: BTB_POZ_Shal-like; cd18420" /db_xref="CDD:349727" misc_feature order(1422..1460,1464..1469,1479..1484,1494..1496, 1503..1505,1512..1517,1521..1523,1569..1571) /gene="LOC106081414" /note="putative beta subunit interface [polypeptide binding]; other site" /db_xref="CDD:349727" misc_feature order(1530..1532,1542..1544,1548..1571,1578..1580, 1656..1658,1662..1670,1674..1676,1683..1685,1695..1697, 1704..1709,1713..1715,1719..1721,1728..1730,1734..1739, 1743..1748,1755..1757,1800..1805) /gene="LOC106081414" /note="putative tetramer interface [polypeptide binding]; other site" /db_xref="CDD:349727" misc_feature 1968..2651 /gene="LOC106081414" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 2817..3053 /gene="LOC106081414" /note="Domain of unknown function (DUF3399); Region: DUF3399; pfam11879" /db_xref="CDD:463381" polyA_site 4609 /gene="LOC106081414" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tctatttgca gcagtgctga gcaaagagcc acggaccaga actcagtgtc cgtgtggcat 61 atactcgaac gatttgtggt ggaaaaaatt gcggaaaacg aaaggcaagc taacgagccc 121 aacagacaaa tacatctttt tttgcacaaa aaaggaaaaa gaacagaaaa ctttaataga 181 aagaattttc tgaaaagtga ttgattttat gaaaaaagga aatgtcacaa caacatggag 241 aaatacatgc taagataaaa taaaataaag tttccaacta aaaaaaaatt gatagcaaaa 301 aattagaaaa cagaaaaaat tgattaaaag tagaaaaaaa gcaaaaaaga agcaaaggaa 361 ttaagagcag cagcgagcaa gcaaatccat gaaaaaaagc taaatccaaa aaaaagaaag 421 gaaaaaaaac caaagcaatg aaatttcaac gaaaagggaa aatttgataa aagcaaaaaa 481 aaaaagagtg gccgaacacc acttgccata ctcccaacac catcaaaaat aacaacaaca 541 acaacacatc aaccacctaa tgccaccaaa gcaacacccc ccaacccgct taacagaaac 601 ggtgccatag aaaacgaaaa gtagtagtcg tcgtcgtcgt cgttatagca gtcgtcggca 661 ataacagcaa caacaacagc aactacaata aaaagaaaaa taaaagaaaa acttgctgct 721 gctgctcaag tgtttgtgga agaattaaaa caaaaacaac aactacaaca ataacaataa 781 tataatcatc ataatcaaca acatagtcat aattatccac aaagtcaacg ccgccatatt 841 cgacgtcttc acagtcaacg tcaacaacat cgttgtcaac aataacggga acgagaagga 901 atatatccag aaaaaaaact tttgtgtgtc atcaaaaaaa tgtcagcaat aacaaaaagc 961 aatataccag tgagaaaaag agggtcttaa gagcagcacc acacagagtc caaaacaaca 1021 acgagaggct ggtagaaggt tacaacaaga aaaaagggca gctttagcaa ttgaactgca 1081 aaaagagtgc cagttactaa gccaccgcca aaataatctc tccaacaaca acaacaataa 1141 aagctgaaag ttactaaacc tcattttgag ttctggctca tggtgttgtt gaactacaac 1201 tattgagagt tacattaact ctctgccttt tttgccaaaa gcaaaacaaa ataaacaccg 1261 caacggctaa cgtgagcacc gccataccag gctctagctg agcaactcgc atttggtccc 1321 atctccatcg cagaaagcca acccacccac ccattcacat tggggtcttt ggtttagttt 1381 tgcattgaaa cattccgcca catagcatgg cctcggtcgc cgcttggctg ccatttgcac 1441 gggcggcggc cattggttgg gtgcccatag ccaccaatcc tttgcctcca gctcccatac 1501 ccaaagatcg ccgcaaaacc gatgatgaga agctgctgat caatgtttcc ggtcgtcgtt 1561 ttgagacttg gcgcaatacc ctagaaaaat atcccgacac cttgttgggc tccaacgaac 1621 gtgaattctt ctacgatgag gactgtaaag agtatttctt tgatcgagat cctgacatat 1681 ttcgccacat cttgaactac tatcgtaccg ggaaattgca ttatcccaaa catgaatgtc 1741 tcaccagcta cgatgaggaa ttggccttct tcggcatcat gcccgatgtc attggcgact 1801 gttgctacga agactatcgc gatcgcaagc gtgagaatgc tgaacgtctt atggatgaca 1861 aactgtcgga gaatggtgat cagaacctgc cgcagctgac agacatacgc cagaaaatgt 1921 ggcgagcctt cgagaatcca cacacatcaa ctgcagccct agtgttctac tatgtgaccg 1981 gcttctttat tgccgtctcc gtcatggcca atgtggtgga aacggtgcct tgtggtcatc 2041 gtcccggccg agctggtaca ctgccctgtg gcgaacgcta caaaattgtt ttcttctgct 2101 tggacacagc ctgcgtcatg atcttcaccg ccgaatatct gctgcgtctg tttgccgctc 2161 ccgatcgttg caaattcgtg cgcagtgtca tgagtatcat tgatgtggtg gccattatgc 2221 cctactacat aggcctgggc attacggaca acgatgatgt gagcggtgca tttgtaacgt 2281 tgcgcgtctt ccgcgtattt cgtattttta agttctcacg tcactcgcaa ggtctgcgaa 2341 ttttgggcta caccctcaaa tcttgcgctt ccgaattggg tttcctggta ttctcattgg 2401 ccatggccat tattatattc gccacggtta tgttctatgc tgagaagaat gtgcatggta 2461 caaatttcac ctcaattccg gcggcatttt ggtataccat tgtcacaatg acaacattgg 2521 gttatggtga catggtaccg gaaacaatag ctggcaaaat tgtgggaggt gtctgctcgc 2581 tcagtggtgt acttgtgatc gccttacccg tacctgttat tgtatctaac tttagtagaa 2641 tttatcatca aaatcaacga gctgataaac gaaaagcgca aaggaaagcc cgtttggcgc 2701 gcatacgcat tgccaaagct tcatcaggcg ctgcatttgt taacaaaaag aaggctgccg 2761 aagcccgttg ggctgcccaa gagtctggca ttgaactgga tgacaattat cgcgatgagg 2821 atatctttga gctgcagcat catcatctac tgagatgttt agagaagaca acggctatag 2881 acccaaatga catactactg gctaaggcaa gtgatcgtga atttgtggaa ttggaaatac 2941 ccttcaatgg aggccagccc aagcgtccca gatccccctc tcccatggcc agtccggctc 3001 attccaccaa cagtgccatg ggtctggtgc aatcatgttg tggacgttgc tgttcccaac 3061 gttatcaggc ctgtggaaaa tatatgcccg ccaccggtaa cgctcaaagt aaccaaaaca 3121 atcaacccat ggatggcacc tatctggtgg aggcctcatt ctagacctga tttcttaaaa 3181 tccaaacaac caactacttt aactagttat gtagtcttta aaaacccatc tcttaagatt 3241 tttatttatt ttcatatggt ttatggttta gaccataaat ccctcttaac aacaacaaaa 3301 agtttcaact aggggagctt aaaaatatga aaaaaaacac acacacaaat tgagaaacaa 3361 aaaacccaat actcaaatga aaaccaaaat gttatcaata aatagttcaa taataatttt 3421 aaaacaaaac aataacaaaa aataaattat taaaaaaata aatttcttag agattaacac 3481 aagaaaatga taacttagag gaactgaaaa caaaacagtt gagaaaaaag aattaatctc 3541 ccaacaacaa agaaaaactt taaattcaaa cacaatttcg gtgttaactc gcaattaaga 3601 aagttgactt tctcattata agtttttttt ttaattactt ttagttcaaa ctgttaaata 3661 gtgtcatagt ctaaaaacaa aataactatc aaggaaaaga aaaatagttt taaaataaaa 3721 aaaaaaaaat ttagaaaaaa ttttcaaaat taaaaaaaac tcctaatttt cccttattat 3781 gaaaaaagaa aacaaaattt tgattaagta gcaaatatat gaaataaaaa aaaaataatt 3841 ttatttaatt tttgtaatac tcctaataaa actatcatag attttagcca actccccctt 3901 aacatagaaa aaacaaaaca aaattggttt aagatttttt ttcttttcca aaaccaaaaa 3961 aaaaaaaaat aaaccaaatc aaccttaaaa tcaaaaattg gtcataagtt tctagaagaa 4021 aaaaattaaa aaaaaaaaaa aaattcaacc attccataag cccccactca attctgtttc 4081 aagataaacc cactattaat tttcaaaaaa aaaaaaacac accctctcaa ttagtaacac 4141 agaactataa aaacaagaat taaaagaaag aagaatgctg ccaaaaacaa gaattcataa 4201 aaaaaaacaa ttgttaaact atcatgaaaa agaaactccc acaataaaga aaaactaata 4261 ttcattcatt gaaaattttt tgctaatgaa tgaaaatctc ccccctttaa ttaactaaac 4321 aaagaattca ttataactaa acaaacaaac cagaagaata agaaaaaaaa aaaataaaaa 4381 aagaacaaaa aatacatgca aaaacctcaa aacacaaaat gagaacataa tttaacttcc 4441 atgctctaag ctgttctttg aatttttttg tgtgtgtctg tgtctataaa ctaaaaacta 4501 aaaaaaaaga aattaagaac aaattgaaaa aaaaaacaca aaaacattta aacgaaaaga 4561 aataacagaa accctcagca acaagaagaa aaaagagaat taagtaaaa