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LOCUS XM_013243188 8315 bp mRNA linear INV 02-SEP-2023 ACCESSION XM_013243188 VERSION XM_013243188.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013243188.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8315 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..8315 /gene="LOC106081311" /note="otoferlin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:106081311" CDS 936..7466 /gene="LOC106081311" /codon_start=1 /product="otoferlin" /protein_id="XP_013098642.2" /db_xref="GeneID:106081311" /translation="MSLTIKVIQFQVPKAKSNLIAKVEFRGVSHITSELSSSSNQIDV NQSFIWPLARPATDEEPLIVELRAQTTKTLIRTSLSHASGGWMGGSPATGTISSSSKC VGQYLMLMQGLIQTGFVHVEDYMVDIATSRSLPVLVIFEAKYVSPDDAAGNFEPTNLV RSIQQQHNISCSTQSLDDDQQMLLDIEQNIANLERTLNKDSSGTIASGSGAASSGSES SKRRLLKRVISSSQSHAQSSSTSATTSTAVMGGGGGGGGTSSTQPIPITGRQRSDIAS RSSSIGGATSDAGTPGGSPVVKEKRITMRAVRSLMRLGRSRNNSQTRDSSTEDEGRSP LIFDSEMAAANAAAGGITNVASSAGNDGIDGLRRGNVMMHTTTTGATLTTPGAESAIS NQSSDVEEMQQVDQGKMMKQMTRTEDHLKSQDFQVCITIIEARQLPGLNMDPVVCIQV GDQKKYTSVKESTNCPYYNEYFVFDFHMPPVMLFDKIITLSVLQSRKFLRAGTLVGSF KIDLSTVYDAADHQFYHKWALLTDPDDFYSGPKGYLKCDIGIIGKGDTVKVPQKSEKD PDDIEANLLLPDGVPIERQRAKFIVKIYRADGLPRMNSSIMANVKKALTGESKDLVSP YVQVSFAGLSGKTTVKKNAYAPVWNEQLVFTEMFPPLCQRIKIQLRDADPMKPAIIGT HYIDLKQISNDGEKGFLPTFGPSFIHLYGSTRDYTLLDQHSNLNTGLGEGVSYRARLL IAIRTEITENIELTTEKNVELEPTQLISESSYSRNEEFFLFGSIIEASMIDKKISDRT VFFELSMGNAGNSIDGHNESFTTLAEDSEDGCLLEAVDTTSFSSTTNSCKPISHDKNH YYLPYWDYKPCMDVRCTLPDLRRRMYNSNMLTKMAEKFEDGLHETGHMIENEDPKAEV RLRSTLEELASACVRYQTITKANGVGPGSGKTKLDKERMKLCTREIESLGNLARNLRA LVTKNSLKERYKQAQTYMPKLKFLIDDPQHSLPDIFLWLVANGKRYCYHRMSARDLIY SPIEEEAGVHCGKIQTLFLRLPGRQASGSASWFIQAKLSIYMWLGTVGHKQHFFEGLP IGYDLSHELRNAERPGAMAPNNIHYLEKSTFQLRAHIYQARSLIGSDASGLSDPYATV YITEYAKTTQVIEETLSPTWDELLVFDEILVYGTKDEIKKNPPTIIIEIYDQDKVGKS EFIGRAMAKPRVKLRENAYVTPTLEWFDIARGPDNAGELLAAFEMLELGSPDMPRLTE PKNPITNETNNERNNLPPQDTIFPVPKEVRPHLSRFRLEVLFWGLRDLKRVHFMSVDK PRIDVECSGKILSSNIIQNAKKNPNFPNMLKSIELELPLEEMYAPPITIRCVDCRSFG RYTLVGTHQITSIHRYLYKPPPKEDITKYRTMGGQIILSAPFTEESYHNLVDGFGMQP MMDSLQQANMKDFYGNRRSSCDQFTMYGAACVTKMVKKQTSKKKSSPRSMNKENSIVG EQLDPDDECSRDWWTKYFWSYERLIDSTKAEKALIATDKYLTPNTQLQPPNAKNFGSK FVQKLSPKAMTSLGRSSNKNDENISSSNSSKPSKSFSNNSTALCQIYPGELEAQSEFN NFRDWLHSFALYRGKKTGDSTEDDNRTVGFFKGAIKVYRLPPPKGIDYPIANLPANEP IHVLVRVYIIKATDLHPMDLNGKADPYVVLHLGSKRISDKDNYVSKQLNPVFGKCFEV EATFPQDSMLTVQIFDWDLVGSDDLIGETRIDLENRFYSKHRATCGLALRYEDCGYNQ WRDPMKPTQILSKLCKENKLDTPHYFQDRVAIGKYCMTFSDEEVIAWNGPSTCRNRDE HLALAVLHRWSEIPNVGCKIVPEHIESRPIYNPDKPGIEQGKLEMWVDMFPMDMPLPG PAVDISPRKPKAYELRVVIWNTDDVVLEDDAFFTGEKMSDIYVKGWLKGPQDCQSTDI HYRSLTGEGNFNWRFIYPFEYLAAEERIVLSRRESLFSWDETEVKIPARLELQVWDAD HFSADDFLGAISMDLNRFPRGAKSSKLCTLDMLKTDNMPTVNIFKQKRVRGWWPFYIK KQNEEMELTGKVEAEFHLLTKEEAEQNPAGFGRSEPDALEKPNRPDASFMWFVNPLKS IRYIVWHNYKWAILKGLLLCGIVLFFILFVYSVPGYSVKRILGA" ORIGIN 1 tgttgtttgt ttccaattga tttggcaaaa caccaagtaa gtgatctttg acggaaacga 61 aataatccgc taaacataag tgcgagtttt atgtgcctca gctgtaccca gcatccatgc 121 ccaactcgtt aatattcgat tggcaataaa cgtgaaggca taaatcaaaa tgtttaacgc 181 cgtgttttac atgcacaaca gcgcaaatag tgaaattaac tccagttccc caaagaattt 241 ggcataggca gtgagagtgt gtcgagcgga gtgttacaac aatcaaaaca tttgtgtgtt 301 ggcctacccc atggtgtcgc cgcccaccac atcaggcaat attttgtgtg tgtgtgcgag 361 tgagtgtgtg aaatgatttc ggtgaagcct ttgttgttgt gaatcggata tttgcaatca 421 atgcaaaacg agaacaacaa aataaaaaaa cacaaacaac aacaacaaaa aaacaataac 481 gatgcggaat aatgaaatga taaacattta gtggtgattg cttggtgcat acgatacaca 541 ttcctatgta ttgccgcctc aggccatcgt tttgaactga ataagccttg tgagagacag 601 tttaaaacac aataatgcca tcaaatggaa caacccaaca aataataaaa agcaatattt 661 tacaaatatc acaaaaagtt ttcacagcca caccagcgac agtggtataa cccaaagcca 721 agccgaacag tcagccagct atcaggacct ttattcgaaa ttaaacgaaa acataaaaca 781 caaatattgt gcagcaacat ttgtagcaaa tcctttttta gttgtttagt agcagcacac 841 caacacacca aaccagtaac aaaatcaaaa gcaataacaa acaaatcaca accaaataat 901 caacccaaac accaaaaaag aacaacagcc tcacaatgtc gttgaccatt aaagtgatac 961 agtttcaagt gccgaaagcg aaatcgaatt tgatagccaa agtggaattt cgaggtgtct 1021 cccatatcac atcggaatta agttcatctt caaaccaaat tgatgtcaac cagtcgttta 1081 tatggccttt ggccagacca gccaccgatg aagaacctct gattgtcgag ttacgagcgc 1141 agacgacaaa aactctcatc agaacgagtt taagtcatgc ctcgggtgga tggatgggtg 1201 gtagtcctgc caccggcacc atatccagta gcagtaaatg tgttggtcaa tatctgatgc 1261 tgatgcaagg tcttatacaa acgggatttg tgcatgttga ggattatatg gtggacatag 1321 caacaagtcg atcactaccg gtccttgtta tattcgaagc taaatatgta tctcccgatg 1381 atgctgcggg taactttgag ccaaccaatt tggtacgctc catacagcag cagcacaaca 1441 taagttgcag cacacaaagt ttggacgatg atcaacagat gctacttgac atcgaacaga 1501 acatagcgaa cctggagcgc actcttaata aagattcgag cggcactata gcctccggaa 1561 gtggtgccgc ctctagcggc agtgaatcat cgaaacgaag gcttttaaaa cgggtcatct 1621 cgagcagcca gtcccatgca caatcctctt caacatcggc caccacctca acggctgtca 1681 tggggggtgg tggtggtggt ggtggcacat catcaacaca acccattccc ataacgggtc 1741 gccaacgtag tgacattgca tcccgtagca gctctattgg aggggcgacc agtgatgctg 1801 gtaccccagg cggtagtcca gtcgtcaaag agaaacgcat aacaatgaga gcagtgcgta 1861 gcctcatgcg tttgggcaga agtcgcaata attcacagac acgtgatagc agtactgagg 1921 atgagggcag atcgccttta atatttgaca gtgaaatggc tgctgccaat gctgctgccg 1981 gtggcatcac gaatgtggcc tcgtccgctg gaaatgatgg catcgatggc ttgagacgcg 2041 gcaatgtcat gatgcacaca acgacaacag gagccacatt aacaacgcct ggagccgaaa 2101 gtgcaatttc gaatcaatca agcgatgtgg aagagatgca gcaagttgac cagggtaaaa 2161 tgatgaaaca aatgacccgc accgaagatc atcttaaatc gcaagacttt caagtttgca 2221 taaccatcat tgaagcgcga caactgccag gtcttaacat ggatccggtg gtgtgtatac 2281 aagtgggaga tcaaaaaaag tataccagtg ttaaagagag cactaactgt ccctattaca 2341 acgaatattt tgttttcgat tttcatatgc ctcctgttat gttatttgat aaaatcatta 2401 ctttatcggt tttgcaatcc cgaaaatttt taagagccgg aactctagtt ggttctttca 2461 aaattgatct atctactgtg tatgatgctg cggatcatca attttatcat aaatgggcct 2521 tactcaccga tccagatgat ttttatagcg gccccaaagg gtatctcaaa tgtgatattg 2581 gcattatagg aaaaggtgat accgttaagg tacctcaaaa gtcagaaaag gatccagatg 2641 atattgaagc caacctctta ctacccgatg gtgttcctat tgaaagacaa cgagctaaat 2701 ttattgtgaa aatctatcgt gctgatggtt tgccacgcat gaactcctcc ataatggcca 2761 atgtgaaaaa ggctttaaca ggagaatcca aagatttggt tagtccctat gtacaggtct 2821 catttgctgg cctatcgggc aaaaccacag tgaagaaaaa tgcctatgct cctgtgtgga 2881 atgaacagtt ggtgtttacg gaaatgtttc ctcctctgtg tcaaagaata aagatacaat 2941 tgagagatgc tgatcccatg aaacctgcaa ttattggcac ccattacata gatctcaaac 3001 aaatttcgaa tgatggtgaa aaaggtttcc tacccacctt tggtccctcc tttatacatt 3061 tgtatggctc tactcgggat tacactctac tagatcaaca ttccaatttg aatacaggct 3121 tgggtgaagg tgtcagttat agggcccgcc tcctgatagc cattcgcact gagataaccg 3181 aaaacatcga attgaccacc gagaaaaatg ttgaacttga acccacccaa ttgatatcag 3241 agtcctctta ctcacgcaat gaagagttct ttttgtttgg ttccattata gaagcctcca 3301 tgattgataa gaaaataagc gatcgcactg tattctttga gttgagcatg ggcaacgcag 3361 gcaattccat agatggtcat aatgaaagtt tcaccacatt ggccgaggat agtgaggatg 3421 gttgcctatt ggaagccgtc gataccacat catttagcag taccacaaat tcttgtaaac 3481 ctatttcaca tgacaagaat cattattatc tgccctattg ggattataag ccatgcatgg 3541 atgttagatg tactttgcct gatttgagaa gaagaatgta taacagcaat atgttgacaa 3601 aaatggcgga gaaatttgag gatggtttac atgaaaccgg tcacatgata gaaaacgaag 3661 atcctaaagc tgaagtacga ttgcgttcaa ctttggagga attggcatca gcctgtgtgc 3721 gttatcaaac aataaccaag gccaatggag tgggaccagg cagtggaaaa acgaagttgg 3781 acaaagaacg catgaaattg tgtacaaggg aaattgaaag tttgggaaac ttggcccgca 3841 atctgagagc tttggtaact aagaactcct taaaggaacg ctataagcag gctcaaactt 3901 atatgcccaa gttaaagttt ttaattgatg atcctcaaca ttctttaccc gatatattcc 3961 tatggcttgt ggccaatggc aaacgctatt gttatcatcg catgtcggct cgtgatttga 4021 tttattcccc catcgaagaa gaggccggag tacattgtgg aaaaattcag actctttttc 4081 tgcgcttacc gggaagacaa gcttccggtt cggccagttg gtttatacaa gctaagctct 4141 ccatatacat gtggttgggt acagtgggcc acaagcaaca tttctttgaa ggcctaccca 4201 taggctatga tctgtcgcat gagctaagaa atgccgaaag accaggggcc atggctccca 4261 ataatataca ttatcttgag aaatctacat tccagctaag agctcatata tatcaggccc 4321 gttctttaat tggctctgat gcttcgggcc taagtgatcc ctatgccacc gtttatatca 4381 ccgaatacgc caagaccact caagtcatcg aagaaactct tagtcccacc tgggatgaac 4441 ttttggtttt cgatgagatc ctagtttatg gcaccaaaga tgaaataaag aaaaatcctc 4501 ccaccattat tatagagatc tatgatcagg acaaagtggg taaatctgaa tttataggca 4561 gagctatggc caaacctcgt gttaagctta gagagaatgc ctatgtgact cccaccttgg 4621 aatggtttga tattgcaagg ggaccagata atgctggtga attattggcc gcattcgaaa 4681 tgctagaact gggttctcca gatatgcctc gtctaacgga acccaaaaat cccattacga 4741 acgaaacaaa caatgaacgc aacaatttac cgcctcaaga taccatattt ccggtgccca 4801 aagaagttcg tcctcatttg tccagatttc gtttggaagt tctcttttgg ggcttacgtg 4861 atctgaagag agttcatttc atgtcggtgg ataaacctcg catagatgtg gagtgttcgg 4921 gaaaaatttt aagttcaaat atcatacaga atgctaagaa gaatcccaat tttcctaata 4981 tgctaaagtc catagaattg gaattgccct tggaagaaat gtatgctccg cccattacca 5041 tacgttgtgt ggattgtcgt tcttttgggc gctatacttt ggtgggcaca catcagataa 5101 catcgataca tcgttatttg tataagcccc cacccaagga ggacataacg aagtacagaa 5161 ccatgggagg tcaaataatt ttgtcggcgc cctttaccga ggagagttat cataatttgg 5221 tggatggttt tggtatgcaa ccaatgatgg attctttgca gcaggccaat atgaaggatt 5281 tctatggcaa tcgacgttcg tcgtgtgatc aattcaccat gtatggagca gcttgtgtta 5341 caaaaatggt caaaaaacaa acatcgaaaa agaaatcatc accgcgcagc atgaacaaag 5401 aaaattccat tgttggcgaa caactagatc ccgatgatga atgtagtcgc gattggtgga 5461 caaaatattt ttggtcctat gagcgattaa tcgatagtac gaaagccgag aaagccctta 5521 tagccactga taaatatcta acgcccaata cgcaactaca accaccaaat gcaaaaaact 5581 ttggctcaaa atttgttcag aaattaagtc ccaaagctat gacctcgctg ggacgtagca 5641 gcaacaaaaa tgatgaaaat atatcatcgt cgaattcatc aaaaccctcg aaatcgttca 5701 gtaacaattc cacagctttg tgtcagatct atcctggcga actggaggcc caatcagagt 5761 tcaacaattt tcgcgattgg ctgcactcgt ttgccctgta tcggggcaaa aaaacgggcg 5821 actccacaga ggatgataat cgcacagtgg gcttctttaa gggagccatc aaagtttatc 5881 gcctgccacc gcccaagggt atagattacc ccatagcgaa tttgcccgca aacgaaccca 5941 tacatgtgct ggttcgtgtc tatatcataa aggcaaccga tttgcatccc atggatttga 6001 atggcaaagc agacccttat gtggttttgc atttgggcag taaacgcata tcggacaaag 6061 ataactatgt cagcaagcaa ttgaatccgg tatttggcaa gtgttttgaa gtagaggcca 6121 ctttccccca agactcaatg ctgacagtgc agatattcga ttgggatttg gtgggctcag 6181 atgatttgat aggcgagaca cgcattgatt tggaaaatcg tttctacagc aaacataggg 6241 ccacctgtgg tctggcactg cgctatgaag attgtggtta taatcaatgg cgtgatccca 6301 tgaaacctac acaaattcta tcgaaattgt gtaaagaaaa taagttggat accccacatt 6361 attttcaaga tcgcgtggct ataggcaagt actgtatgac cttctccgat gaggaggtta 6421 tagcctggaa tggtcccagt acttgccgta accgcgatga gcatttggct ttagctgtcc 6481 tacatcgctg gagtgaaata ccaaatgtcg gttgtaagat tgttcctgaa catattgaaa 6541 gtcgtcccat ctataatcct gataagcccg gcatagaaca gggcaaactg gaaatgtggg 6601 ttgatatgtt tcccatggat atgccgctgc cgggaccagc cgttgatata tcaccaagaa 6661 aacccaaggc ctatgaattg cgtgtggtca tatggaatac tgatgatgtg gtactagagg 6721 atgatgcctt ctttacgggt gaaaaaatgt ccgatatcta tgtcaagggt tggcttaagg 6781 gtccccaaga ttgtcaatcg acagatattc attatcgttc tttgaccggt gagggtaatt 6841 ttaattggcg tttcatctac ccctttgaat acttggctgc ggaagaacgc attgttttgt 6901 ctcgacgaga gtccctattt agttgggatg aaactgaggt taagatacca gctcgtttgg 6961 aactacaagt atgggatgct gatcatttct ctgccgatga cttcttgggg gccatatcaa 7021 tggatttaaa ccgctttccc cgaggtgcta aatcttctaa attatgtact ctggatatgt 7081 tgaaaaccga caacatgcca actgtaaata ttttcaaaca aaaacgtgta cgtggatggt 7141 ggccatttta cattaagaaa caaaatgaag agatggaatt aactggaaag gtggaagctg 7201 aatttcattt attaactaag gaagaagcag aacaaaatcc tgctggtttt ggtcgcagtg 7261 aaccggatgc tcttgaaaag ccaaatcgtc cagatgcttc gttcatgtgg tttgtaaatc 7321 cattgaaatc aattcgctac attgtctggc acaactacaa atgggccata ttgaagggtt 7381 tgctgctatg tggcattgta ttgttcttca ttttgtttgt atactctgta cccggttatt 7441 cggtcaaacg catattgggt gcctaaaaag atcttatgcc tgagcataaa ccaaactaca 7501 gagttaggaa acaaaaatgg ggcgcatttt tcttcaaaat ctactacaaa atttattaaa 7561 ccaaaaaaaa aaattgattg aacaagaaaa gaaacaagag ggttgtacct gattttgtta 7621 agagtgtttg tgtttgtagg cctaagttta gttaaggaat ttaatacttt acagcctaga 7681 ttaaggttaa gaatctattt atgtattata gaatatacaa atgtaacact tgtcgttatg 7741 aacaacaatg agattgtaag ggtttcaggg taccttaact aaacaaaaag tgatctttgg 7801 atgattgaaa caaatagtgc aaatagtata ttgatgagtt ttagattata tgcatgagag 7861 tgtgcgtgac agaaaataac aaaaaaggag actagtgtgt agtctttcag caagatacat 7921 attgctcaaa ttatagatat ttttagatta cacatttatc aaaaacttat tacacttatt 7981 aaggtagcaa tgtaagcggt tgaattgaac acaaactctt tttaacacag tgttgccaac 8041 tgttgaggac aaagattgtt ttcacacttt atatatgttc attccctatg tttttttttc 8101 gttaccgata taaacaccag ctacaacaag tagcaaacca cattatgttt tctgatgcta 8161 cggcacagaa cattaatcgc tcaatatttg gttaatattt gattgatcaa ttggcgtact 8221 cacaggatat cgacaattat tattcgtcgt aaggacgctg aaattctgaa cttattggaa 8281 gttcacaata aacctaaaat tgaattttat ttaac