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LOCUS XM_013243007 9112 bp mRNA linear INV 02-SEP-2023 transcript variant X2, mRNA. ACCESSION XM_013243007 VERSION XM_013243007.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013243007.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..9112 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..9112 /gene="LOC106081202" /note="homeobox protein cut; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:106081202" CDS 1417..7155 /gene="LOC106081202" /codon_start=1 /product="homeobox protein cut isoform X2" /protein_id="XP_013098461.2" /db_xref="GeneID:106081202" /translation="MQPTLPQTAGTADMDLTAVQSMDWFFKKEQIYLLAQFWQQRATL AEKEVNTLKEQLSTNTPNTDTNSEGDNNLDLSISTSTAANITNTTNSGEAAEASDNNT ASATDIPPNNRLTPSSFDSHNTKLLNSVAAAITLHQNGGNLLATTPSPSPPLSDSGSS QQQLNGCLNPKLFFNHAQQVMMMEAAAAAAAAAAAAVQQQQSPMHSPQPADANTTHNA QDSSAEEMQQPTNNNKTMEHKDNASSSSSLDKASSDTQQLQQHSPEKDNINNSPRHRS TGLVEEEDDDEDEEANAEQASDCASINNNNINNNNNKNINSFNSDNKHSLNASCAETE MLKHKTKTTTSTTVAASTHATEDANSEDLESRGPLLEPKHSDFVAAKEKEIKALFEEV KRLRALEQSHLVQIHRLEEHLEAKRQHIVRLEAKLEKEQINEALQQSAGPPKSDRQEN PESEVVAENLETPQMVIDYDDDEDEEDRPAEPIQHNLDDDEDDEEDNCDLDKENNNDN EQNQNSNANPEQNAGEDVQKEALKIKKETQAPLSLDSISQQNVVAAAAAAAAACNNDP NKFQELLMERTKALVAAEALKNSEDAHFPHHHPHQQQQHLHHQLPPHLADHHDKSSAA HNHHESSASSASTPNLPEQRSSEEQHQQHHHSLNGSLKNFEDNNNSLGATPTGHGLGG GHPHLPHGFLPGLPFQFQDRGHFRFADDLQLPPGTSMAGRLGESLIPKGDPMEAKLQE MLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRIFAKYILGLSQGTVSELLSKPKP WDKLTEKGRDSYRKMHAWSCDDNAVMLLKSLIPKKDSGLPPYGAGRDDSMSDDRIAHI LNEASSLMKGSGPSVLQQQQRSGIPEDSHSAEDSKSPHQPCSSPFYKDHMKSQMDNSM SGSGHMRPDEVNPEKMARLYQEIMARAPREAFPGFLLSPFFSGGLPAGMGANAFPGLA ADENMRMAFEREMSKLQQQQQQQQHSQPPNFANFSSLMALQQQMLNGAQDLTLGKEEG LKDSKLNGQRHSFDGSSQNSLSNAAGGQTTPNAKENSASDVDRLYPGMVKNEQGNKTP APALSSNASTTNTNSAAPSPLSNSILPPAMTPTDEFGATASPLQRMASITNSLITQPP VPPHHTPQQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVL GLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDDNAVHKLVASQYKIAPEKLMR TGNYAGAPQMPPGLVGKMPPSLPMQKMMSELKLQEPAHIMQQMQAAAVMSAAMQQHQQ QQQAAAVQQSQQAAAAQAAVQAAQAAAAAQAAQAAQAAQQHHQSMLLTSPGLPPQHAI PLPAANSNPTSGASTPAGGPSSEKKQPMMMPIHSPHQGNAMRNMHQHMSPTVYEMAAL TQDLDTQVITTKIKEALLTNNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGRE PFIRMQLWLSDANNVDRLQALKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSS PGPGSVGSAGAPPNKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELNLATRTI TNWFHNHRMRLKQQVPHGPPGQETNIPTRENTNSTPFDPVQFRILLQQRLLELQKERM GLGGNNPLPYPPYFAAAALLGRSLAGMPNAGGAGVPNEAELRALNQKFQEQMAGLDLS MSSLKRERTDDFDDDLDDGHLSENENDSLDGEDKGGEFKALSSLNAQHFLNSMRLNRR KPAAPQWVNPAVPSATESERIINGVCVMQEGNDESSTHHEEENQAKSSSHNDSEDADA DAPHHLVMEPEVLIKQEKEDCESDNDKPANDEASAMMSAEDKLRMVRVNRLSNEDEGV APAIMPATAWNY" polyA_site 9112 /gene="LOC106081202" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttcgtgacag gcaacatctc attagattaa cgttgcgctg tctgttcgct cttctttttt 61 tgtagtagta aataatcaaa tcagatcaca aagcaacaac aacacaccat atataatttt 121 caaatctaac tacagcaaaa aaaaaagaat aacaaaaaca aaccaaaaaa gccgatgata 181 tataaaaaga gaaagaaaag cctggtaaaa gaagaaaatt cacaaatgca tacgcggaag 241 aaaatcgaaa cgacgttcga tcaattgaaa gccaaattcg caacttgact aacggattaa 301 tacgcgtaga cggaatttta tctttcgtat gaatggagta aagaaaaaca taaacaaaac 361 aagtgtttga gcccatatat gcacaccttg ccgggggaga agagaattta aaaaaaaaat 421 atttgcaaaa aacaagtgtc tgtttgaaga aaaaatatgc tgtaaacaga agacaagtgt 481 ttgaatattt tatttgttaa acaaaaaccc caaacaacaa cacatggaaa aaagaagtga 541 aagcaaacaa aatcaaaatt tataacaaaa aaaaatcaat agtgaaacat tttgcatttt 601 gcaaactttt aaagaaattt tttaaaaaaa aaatgctttg atacttgaaa ctaagccagc 661 ctacagtttt tatttgcaag tgtgttgaaa aaataccaac agtaccaatg gccaaaataa 721 aattcaaatt taaatttgtg ttaactttaa caatataatt tctccaatct tgggttattt 781 attgtgcaac gtgccccttt acctgtttcc ccccaccaac aaccacccac tctcatttct 841 acataaatcc aaagagcaaa tagaaaccca aagaaaagaa aattacatat ttttgaaaga 901 aaaacgttaa gaatttctaa agacaaactg gaatctgtaa ctgaaaaaac gtcgtcttta 961 acagcaacaa cgcctttaag ccaccgcctc aacagtggtg taccaaccac ggctgctggc 1021 tccccacaac aaatcataac cgccaacaac acctcattct catcaacatc attatcatca 1081 ttgccattaa tttcaacaac tcccccctta tcatcgatat tatcagctga gaccagtacc 1141 agaagtaaca gagctaacca agttaacacc tgctgctcat cattgtcacc atttccctca 1201 cctaaactat caacaacagc agcagtgtca gcagtcagct tgaccaccaa caccttcaaa 1261 acggcggcta aatcatcctc atcctcctca tcgtcaccct tgccagcagc agcccccaca 1321 gcagcagcag cagcattagt ggcagcaaca gcaacaacat tattgccaac aacagttatc 1381 gattcagttg aggcctcctc caatcaaagc aaccgaatgc agccaacatt gccccaaaca 1441 gccggtacag ccgatatgga tttgacggct gtacaatcaa tggattggtt tttcaaaaag 1501 gaacaaattt atctattggc acaattttgg caacagagag ctaccttggc tgaaaaggaa 1561 gtcaacactc tgaaagagca actgtccacc aataccccca ataccgatac caacagcgaa 1621 ggtgacaaca atctggattt gtcaatttcc acctccacag cagctaacat cactaatacc 1681 acgaatagcg gtgaagcggc agaagccagc gacaacaata cagcatcggc caccgatatc 1741 ccaccaaata atcgcctgac gccctcctca ttcgatagcc acaatacgaa attactaaac 1801 agtgtggctg cagccataac actgcatcag aacggtggta atctgttggc tacaacacct 1861 tcaccatcgc cacccctctc cgatagcggc agcagtcagc aacaattgaa cggctgctta 1921 aatcccaaat tgttcttcaa tcacgcccaa caagttatga tgatggaagc tgctgccgca 1981 gcagcggccg ccgccgctgc agcagtgcaa cagcaacaat cgcccatgca ttcgccacaa 2041 cctgctgacg ctaacacaac acacaatgca caggactcaa gtgctgagga aatgcaacaa 2101 cccaccaaca acaacaaaac aatggaacac aaagataatg catcatcatc atcgtcatta 2161 gataaggcct caagtgatac tcaacaactg cagcagcatt caccggaaaa agacaacatt 2221 aataacagcc cccgccatcg atctactggc ttggtggagg aggaggacga tgacgaagac 2281 gaggaagcta atgcggagca ggccagtgat tgtgcttcga taaataataa taacattaac 2341 aacaacaaca acaaaaatat caatagtttt aatagtgata ataaacatag tttaaatgcc 2401 agttgtgcgg aaacggaaat gctaaaacac aagacaaaga caaccaccag caccaccgtc 2461 gccgccagca cccatgccac agaggatgca aactcagaag atttagagag tagagggcct 2521 ctattggaac ccaaacactc tgattttgta gctgccaaag agaaagagat taaagcctta 2581 tttgaagaag ttaaacgttt aagagccctt gaacaatccc acttggtaca aatccatagg 2641 ctggaggaac atttggaagc caaacgccaa catattgtac gcttggaagc caaattggaa 2701 aaagaacaaa tcaatgaagc cctacaacaa tccgctggcc ccccaaaatc cgatcgtcaa 2761 gaaaaccccg aatcggaagt ggtggcagaa aatttggaaa cccctcaaat ggtcatcgat 2821 tatgatgacg atgaagatga ggaggataga cctgcagaac caattcagca taacctagac 2881 gatgatgaag atgacgagga ggacaactgt gatctagaca aagaaaataa caatgataat 2941 gaacaaaatc aaaattctaa tgctaaccca gagcaaaatg ctggcgagga tgtgcaaaag 3001 gaggcattga aaatcaaaaa ggaaacacag gctcctttgt ctttggactc cattagccaa 3061 caaaatgttg ttgcagctgc tgctgcagcg gcagccgcct gcaataacga tcccaataaa 3121 ttccaggaat tactcatgga acgcaccaaa gccttggtag ccgctgaagc tttgaagaac 3181 tctgaagatg cccacttccc acatcatcat ccacatcagc agcagcaaca cctccatcac 3241 caattgcctc cccacttagc cgatcatcat gataagtcct cggctgccca caatcatcat 3301 gaatcgtcag cctccagtgc cagtacgccc aacttgcccg aacagcgttc gagtgaggag 3361 cagcatcagc aacatcatca ctctctcaat ggctcgctga agaatttcga agacaacaac 3421 aacagtttgg gagccacacc caccggccat ggtctgggtg gaggtcatcc ccatttacct 3481 catggcttcc tgcccggttt accattccaa tttcaagatc gcggccattt ccgctttgcc 3541 gatgatttgc aattgcctcc gggcacctca atggctggcc gcttgggcga gtccctgata 3601 cccaaaggtg atcccatgga ggccaaattg caagagatgc tacgctacaa tatggacaaa 3661 tatgccaatc aggccttgga cacattgcac atttcgcgcc gtgtacgcga gctgctatcg 3721 gtgcacaaca ttggccaacg catatttgcc aaatatattt tgggcctgtc acaaggcacc 3781 gtctctgagc tgctgtccaa gccaaagcct tgggataaac tcaccgagaa aggacgtgac 3841 agttaccgca aaatgcatgc ctggtcctgt gatgataacg ctgttatgct gctcaaatcg 3901 ttgataccta agaaagattc tggcttgccg ccttatggtg ctggtcgtga cgattccatg 3961 tctgatgatc gcattgctca cattttgaat gaagcctcat cactgatgaa gggttcaggg 4021 ccttcagttt tgcaacagca acaacgttcg ggcattcccg aagattccca cagcgctgag 4081 gattccaaat cacctcatca accttgttcc tcacccttct acaaggatca catgaaatca 4141 cagatggaca actcaatgtc tggctccggt catatgcgcc ccgatgaggt taatcccgaa 4201 aaaatggctc gcctttacca agagataatg gctagagctc cacgagaagc attcccaggt 4261 ttcttgcttt ctcccttttt cagcggcggc ctaccggccg gcatgggtgc caatgccttt 4321 cctggcctag cggccgatga aaatatgcgc atggcctttg aacgagagat gtccaaattg 4381 caacagcaac aacagcagca gcaacactct cagccgccca actttgccaa tttctctagt 4441 ctcatggctc tgcaacagca aatgttgaat ggggcccagg acttgacact gggcaaagag 4501 gaaggcctga aagactccaa actcaatgga caacgtcact cctttgatgg atcctcacag 4561 aactcactca gcaacgctgc cggcggtcag actaccccca atgccaaaga aaattctgcc 4621 tcagatgttg atagactgta tcccggtatg gttaagaacg aacagggcaa caagactcca 4681 gctccagcac tttccagcaa tgcttccacc accaacacca attcggctgc tcccagtcct 4741 ctcagcaact ctatactccc gcctgctatg actcccaccg atgagttcgg tgccaccgcc 4801 agccccttgc aaagaatggc ttccatcacc aattccctga ttacccagcc tccggtacca 4861 ccacatcata caccacaaca gcgccccacc aaagccgtct tgccacccat cacccaacaa 4921 caattcgata tgtttaacaa tctcaatacc gaagacattg tgcgccgtgt caaggaggcc 4981 ttatctcagt attccatttc gcagcgcctg tttggagaat ctgttttggg cctatcccag 5041 ggatccgtat cggacctctt ggcccgtccc aagccctggc acatgctcac ccagaagggt 5101 cgagaaccat tcatacgcat gaaaatgttt ttggaagacg acaatgccgt acacaaattg 5161 gtagcttccc aatacaaaat agctcctgaa aagctaatga gaacaggcaa ctatgcagga 5221 gccccacaaa tgcctccggg cttggtgggc aaaatgccac catccctgcc catgcaaaag 5281 atgatgagtg aattgaaatt gcaggaacca gctcacatta tgcaacagat gcaggcagcc 5341 gctgttatgt ccgctgccat gcagcagcat caacaacagc agcaggctgc cgcagttcaa 5401 cagagccagc aggccgctgc tgctcaggca gcagtgcagg ccgcacaagc tgcagctgcc 5461 gctcaagccg cccaggccgc tcaagctgcc caacaacatc atcagagcat gctattgact 5521 tcgcctggct tgcctccaca acatgccatt cctttgcctg ccgccaactc taatcccact 5581 tcgggcgcca gcacacctgc cggtggtccc tcttccgaga agaaacagcc aatgatgatg 5641 cccatccatt cgccccacca aggaaatgcc atgcgcaaca tgcaccagca catgtcaccc 5701 accgtttatg agatggcagc cctcactcaa gatttggaca ctcaggttat caccaccaaa 5761 atcaaggagg ctttattgac caacaatatt ggtcagaaga ttttcggcga agctgttttg 5821 ggtttgtctc agggttccgt gtcggagttg ctgagcaagc ccaagccctg gcatatgttg 5881 tccattaagg gtcgagagcc tttcattcgc atgcagttgt ggctttccga cgccaacaat 5941 gtggaccgtt tgcaggcgtt aaagaatgag agaagagagg cctccaaacg ccgacgttcc 6001 acaggaccca atcaacagga caacagctca gatacttcca gcaatgatac caatgatttt 6061 tacaccagca gtcctggtcc tggttcggtg ggaagtgccg gagctccccc gaataagaag 6121 cagagggtgc tgttctcaga agagcaaaaa gaggctttgc gattggcatt tgctttggat 6181 ccctatccca atgtgggcac catagaattc ctggccaatg aactgaactt ggccactcgc 6241 accatcacca actggttcca caatcatcgc atgcgtttaa aacaacaagt gcctcatggt 6301 cctccgggcc aggaaacgaa tatacccaca cgtgaaaaca ccaattccac tcctttcgat 6361 cccgtccaat tccgcatctt gttgcaacag agattactag agctgcaaaa ggaacgcatg 6421 ggtctgggag gcaataatcc cttgccatat ccaccctatt ttgcggcggc tgctctattg 6481 ggccgcagcc tggctggcat gcccaatgcc ggaggtgccg gtgtacccaa tgaagccgaa 6541 ttgagagcct taaatcaaaa attccaagaa caaatggccg gtttggactt gtcaatgagt 6601 tcgctgaagc gtgagagaac cgatgacttt gacgatgatt tggatgatgg ccatctcagt 6661 gagaacgaaa atgactcttt ggatggcgaa gacaaagggg gagagtttaa ggcgctgagc 6721 agtctaaatg cccaacactt tttgaatagc atgcgcttga acagacgcaa acctgccgca 6781 ccacaatggg ttaaccctgc cgttccctca gccaccgaaa gcgagcgcat tatcaatggc 6841 gtttgtgtta tgcaggaggg caacgatgag tcctcaaccc accacgagga ggagaaccag 6901 gccaagtcat cgtcgcacaa cgacagtgag gatgccgatg cggatgcccc acatcatctg 6961 gtcatggagc ccgaggtgtt gatcaaacaa gaaaaagaag actgcgaaag tgataacgac 7021 aaaccagcaa atgatgaagc gtcggctatg atgagtgccg aggacaaact gagaatggtg 7081 agggtcaatc gtctgagcaa cgaggatgag ggagtggcgc cagccatcat gccagccaca 7141 gcgtggaatt attaagaaat aatagaccgc aaaacaaggc agagaaagtg caatgttcgg 7201 aaatgttgtc ttttttgatt taactgtttt ctttacaagt tttatttttt gttgtgatta 7261 agtttgcata gggttgccac accgtgtaaa tagtagtcgt aaggcatcag ctggcaactc 7321 ttgattaaca gatttgaaca aatgagtatt atgatttgat ttctaagaat tttcgttttt 7381 aagttttctt ttattgcctt taggttttta gtttttagtt cataaataaa gactgtaaat 7441 tataagtttt gaggagtttc agttcatata tatttaaatg taaatataat ttaatagttg 7501 tatatataga agaaaaccac acacgcagac atgcaaacca attcaaaatc tgatttaact 7561 tcctttttga tctcaaaaga actatcgatg atttttttat aataaaaaaa taaaaataaa 7621 aaaaaaaatt actaaaaaag ggtagttaaa caagcaaaca taaatttata aaaaaaaaaa 7681 gaatctcttt ttttttaaaa aacaaaaaca caataaagaa aatatataaa atatatgaaa 7741 taaacaaaaa actaaaatga accatatgat aaaataaaaa taaattataa aacaataaca 7801 tatgtagatg ataatagttt aaatttcttc tttaataata atgaaaaaaa acaacaacaa 7861 aaatcacttt aagataaaaa cttaaaagaa aaaacatcaa aaaataaaag cccttttagc 7921 atatcgttta ttctaataaa acaaaaccca ataagttttc caaaaattta aacctaaacg 7981 cataaaaaca aaacacaaaa caaatcctaa gttttcctac ttatttataa acgaaaaaaa 8041 aaaaaaacaa aataaaacaa aaacgcccac acaaacacaa aatattttag gctaagctcc 8101 aaatgtatat attagttgta gcttataagt ttaaacaagt taatattata attattatta 8161 ttattattat tgtcaccaaa atttttatta ctatcggaaa gtaaaaacca acaaatttaa 8221 tgtttatctg ttctgttgat aataagtcaa aataaaatac atatatttaa aataatatgg 8281 cataacaaaa attcgttttc ttatgcatct caaaaaaaaa aaaaaaaaca aaaaacaaac 8341 gaaaccaaca accaacaatt tgcatttcta ttttatatgc tttagttaaa acttagtttt 8401 attagtttat aattttatca ttattatttt tttgaaataa aaacgaaaaa catgaaaata 8461 attatcacaa aaaaagaaaa aaacaaaacc aaatcagttt ttattttacc acaattttaa 8521 agacacgaaa cgcgaaaatt ttgaagaaat aaatgaatag cagaggaacc ttagtcctcg 8581 caataaattt ttataaataa atttaaataa aaaaaattaa aaaaaaaaat ggaaaaaagc 8641 catggcctct gctaaggtct agtagttttt ttttttttgg acttatataa agaacaaaaa 8701 atatcgataa aaatcaacaa aaccaagtta tttagtttat tatagttatc gaaacaaaca 8761 acaaaaatat aataacaaga aaaacaaaaa caaaattaaa aatattatta aaaataatat 8821 ctcataactt atcaaataag ccccaccctg gccccttcct ctcaaaaaca aaaaaaaaat 8881 cctttgaccc aaaaacaagt aaaccaaaaa ttatcaaaaa attatacacc ttctccctgg 8941 cccttttaac attcacacaa actctctcac atttacactt tcacacacac acacacattc 9001 acacattctc tctctctcaa acacatgaaa tcttaacgcg tacgtaataa ttataaaaat 9061 taaaattaat taaaaattaa taaaatcaag aaaaatattt caaaaaagta aa